Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.53006 * 109.46742 * 119.99736 * 2 1 3 5 5 N 1.46900 * 109.46995 * 63.83060 * 4 2 1 6 6 C 1.46896 * 110.99757 * 198.32780 * 5 4 2 7 7 C 1.50702 * 109.47475 * 72.50971 * 6 5 4 8 8 H 1.08001 * 119.99321 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00367 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00253 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99966 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47188 * 89.99701 * 11 9 7 13 13 H 1.48497 * 109.46752 * 209.99838 * 11 9 7 14 14 H 1.48497 * 109.46913 * 329.99822 * 11 9 7 15 15 C 1.46905 * 110.99639 * 74.37668 * 5 4 2 16 16 H 1.08990 * 109.47214 * 319.26835 * 15 5 4 17 17 C 1.53000 * 109.46719 * 199.27201 * 15 5 4 18 18 C 1.52996 * 109.47352 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.47012 * 59.99707 * 18 17 15 20 20 C 1.53000 * 109.47301 * 300.00324 * 19 18 17 21 21 C 1.52994 * 109.47201 * 79.27646 * 15 5 4 22 22 H 1.09003 * 109.47679 * 59.99165 * 21 15 5 23 23 O 1.42907 * 109.46896 * 299.99768 * 21 15 5 24 24 H 1.09006 * 109.46793 * 60.00098 * 1 2 3 25 25 H 1.08994 * 109.47794 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47300 * 300.00768 * 1 2 3 27 27 H 1.08994 * 109.47387 * 239.99841 * 2 1 3 28 28 H 1.09000 * 109.47000 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47158 * 299.99678 * 3 2 1 30 30 H 1.09003 * 109.47613 * 59.99423 * 3 2 1 31 31 H 1.08998 * 109.46731 * 303.83046 * 4 2 1 32 32 H 1.08998 * 109.46700 * 183.83590 * 4 2 1 33 33 H 1.09001 * 109.47235 * 192.51315 * 6 5 4 34 34 H 1.09007 * 109.47612 * 312.51151 * 6 5 4 35 35 H 0.96999 * 120.00305 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47041 * 300.00403 * 17 15 5 37 37 H 1.09002 * 109.47029 * 59.99839 * 17 15 5 38 38 H 1.09000 * 109.46873 * 300.00374 * 18 17 15 39 39 H 1.08994 * 109.47310 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47325 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47278 * 60.00530 * 19 18 17 42 42 H 1.08991 * 109.47293 * 299.99725 * 20 19 18 43 43 H 1.09002 * 109.47354 * 179.97438 * 20 19 18 44 44 H 0.96705 * 113.99866 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6272 -2.1303 1.2040 6 6 1.7039 -2.7444 2.5362 7 6 0.5857 -2.2167 3.3978 8 1 -0.1124 -1.4974 2.9957 9 6 0.4539 -2.6522 4.6993 10 7 1.3036 -3.5285 5.1888 11 14 -0.9327 -1.9985 5.7670 12 1 -2.1259 -2.8696 5.6168 13 1 -0.5014 -1.9904 7.1879 14 1 -1.2728 -0.6160 5.3449 15 6 2.4297 -2.8828 0.2304 16 1 2.5806 -2.2761 -0.6623 17 6 1.6969 -4.1718 -0.1468 18 6 2.5329 -4.9559 -1.1603 19 6 3.8893 -5.3023 -0.5432 20 6 4.6222 -4.0133 -0.1659 21 6 3.7864 -3.2293 0.8470 22 1 3.6355 -3.8360 1.7399 23 8 4.4708 -2.0253 1.1994 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6215 -0.2485 2.1379 32 1 3.1277 -0.6621 1.2844 33 1 1.6114 -3.8265 2.4434 34 1 2.6621 -2.4997 2.9946 35 1 1.2106 -3.8351 6.1044 36 1 1.5459 -4.7785 0.7461 37 1 0.7303 -3.9250 -0.5860 38 1 2.6842 -4.3493 -2.0532 39 1 2.0110 -5.8744 -1.4287 40 1 4.4848 -5.8613 -1.2650 41 1 3.7381 -5.9089 0.3497 42 1 4.7736 -3.4068 -1.0588 43 1 5.5884 -4.2601 0.2741 44 1 5.3407 -2.1693 1.5967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226245220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = -74.775585 kcal Electronic energy + Delta-G solvation = -21006.761068 eV Core-core repulsion = 18150.874111 eV Total energy + Delta-G solvation = -2855.886957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38559 -36.23728 -35.16284 -33.75537 -32.23663 -29.70745 -28.45139 -26.87560 -26.52780 -24.13680 -22.36792 -22.18612 -20.63265 -19.48839 -18.53386 -16.82815 -16.32686 -15.20833 -14.92676 -14.51026 -14.30466 -14.08326 -13.61837 -13.40912 -13.16965 -12.70095 -12.43079 -12.34937 -12.09858 -11.69608 -11.54647 -11.35918 -11.25023 -11.04798 -10.94638 -10.77440 -10.59061 -10.49755 -10.32757 -10.24452 -9.99687 -9.88247 -9.82258 -9.47318 -9.21179 -9.04356 -8.32494 -6.93577 -5.94537 -3.93913 3.36020 3.41854 3.46171 4.47653 4.54561 4.85461 5.00786 5.20452 5.30518 5.40822 5.46860 5.52971 5.59831 5.68999 5.72808 5.78250 5.81532 5.87368 6.02076 6.11377 6.16060 6.24974 6.29293 6.32162 6.39803 6.41757 6.42977 6.48225 6.62983 6.68192 6.73798 6.84057 6.99187 7.08524 7.16353 7.41815 7.56695 7.93600 8.07391 8.25542 8.41442 8.71743 9.15070 9.69545 11.15953 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.008334 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.584568 B = 3359.068687 C = 4303.074176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.057 3.943 5 N -0.524 5.524 6 C 0.194 3.806 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.096 3.904 16 H 0.069 0.931 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.147 4.147 21 C 0.072 3.928 22 H 0.064 0.936 23 O -0.554 6.554 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.025 0.975 34 H -0.003 1.003 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 0.671 -11.713 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.070 4.070 5 N -0.246 5.246 6 C 0.069 3.931 7 C -0.537 4.537 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.014 4.014 16 H 0.087 0.913 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.186 4.186 21 C 0.012 3.988 22 H 0.082 0.918 23 O -0.360 6.360 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.015 0.985 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.270 0.840 -11.921 12.691 hybrid contribution 0.701 -0.058 1.234 1.420 sum 4.971 0.782 -10.687 11.813 Atomic orbital electron populations 1.21678 0.95325 1.02491 0.99537 1.21102 0.96150 0.94665 0.98959 1.21793 1.00461 0.96954 1.00875 1.22256 0.99033 0.89066 0.96686 1.62212 1.51127 1.01363 1.09879 1.19700 0.95937 0.94393 0.83040 1.21226 1.12251 1.24490 0.95703 0.92011 1.24959 0.96347 0.95442 0.97955 1.69953 1.36735 1.31918 1.15607 0.86572 0.82402 0.79358 0.79516 1.20799 1.21483 1.19935 1.21689 0.88347 0.95071 0.96254 0.91259 1.21513 0.98449 0.95499 0.99042 1.21562 0.95675 0.99871 0.98552 1.21475 0.96361 0.96927 1.00668 1.22251 0.98746 0.97253 1.00330 1.22786 0.93315 0.85984 0.96711 0.91773 1.86607 1.34337 1.31460 1.83559 0.94917 0.91325 0.93360 0.92547 0.93266 0.93620 0.92956 0.90978 0.92390 0.95716 0.98549 0.93189 0.91205 0.91046 0.92370 0.92095 0.92402 0.91814 0.91827 0.92558 0.79202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.07 37.16 0.34 -1.92 16 2 C -0.09 -1.52 2.95 -90.62 -0.27 -1.79 16 3 C -0.14 -2.10 9.19 37.16 0.34 -1.76 16 4 C 0.06 1.16 4.04 -3.82 -0.02 1.15 16 5 N -0.52 -11.15 3.67 -228.08 -0.84 -11.99 16 6 C 0.19 4.99 3.24 -4.98 -0.02 4.97 16 7 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 8 H 0.06 1.75 7.71 -52.49 -0.40 1.34 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.10 1.73 1.91 -67.71 -0.13 1.60 16 16 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 17 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 18 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 19 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 20 C -0.15 -1.99 5.54 -26.76 -0.15 -2.14 16 21 C 0.07 1.23 2.19 -26.76 -0.06 1.17 16 22 H 0.06 1.28 6.49 -51.93 -0.34 0.94 16 23 O -0.55 -9.49 9.99 -35.23 -0.35 -9.84 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.95 6.59 -51.93 -0.34 0.60 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.65 7.09 -51.93 -0.37 1.28 16 32 H 0.06 1.20 5.04 -51.93 -0.26 0.94 16 33 H 0.02 0.68 6.21 -51.93 -0.32 0.36 16 34 H 0.00 -0.09 6.99 -51.93 -0.36 -0.46 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.30 6.73 -51.93 -0.35 0.96 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.36 4.80 9.08 45.56 0.41 5.22 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -29.79 328.94 -8.59 -38.38 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.27 Total: 4.48 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.80 Total: -16.87 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.10 Total: -38.10 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.35 Total: -9.84 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.79 -8.59 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226245220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.391 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds