Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.53006 * 109.46742 * 119.99736 * 2 1 3 5 5 N 1.46900 * 109.46995 * 63.83060 * 4 2 1 6 6 C 1.46896 * 110.99757 * 198.32780 * 5 4 2 7 7 C 1.50702 * 109.47475 * 72.50971 * 6 5 4 8 8 H 1.08001 * 119.99321 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00367 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00253 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99966 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47188 * 89.99701 * 11 9 7 13 13 H 1.48497 * 109.46752 * 209.99838 * 11 9 7 14 14 H 1.48497 * 109.46913 * 329.99822 * 11 9 7 15 15 C 1.46905 * 110.99639 * 74.37668 * 5 4 2 16 16 H 1.08990 * 109.47214 * 319.26835 * 15 5 4 17 17 C 1.53000 * 109.46719 * 199.27201 * 15 5 4 18 18 C 1.52996 * 109.47352 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.47012 * 59.99707 * 18 17 15 20 20 C 1.53000 * 109.47301 * 300.00324 * 19 18 17 21 21 C 1.52994 * 109.47201 * 79.27646 * 15 5 4 22 22 H 1.09003 * 109.47679 * 59.99165 * 21 15 5 23 23 O 1.42907 * 109.46896 * 299.99768 * 21 15 5 24 24 H 1.09006 * 109.46793 * 60.00098 * 1 2 3 25 25 H 1.08994 * 109.47794 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47300 * 300.00768 * 1 2 3 27 27 H 1.08994 * 109.47387 * 239.99841 * 2 1 3 28 28 H 1.09000 * 109.47000 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47158 * 299.99678 * 3 2 1 30 30 H 1.09003 * 109.47613 * 59.99423 * 3 2 1 31 31 H 1.08998 * 109.46731 * 303.83046 * 4 2 1 32 32 H 1.08998 * 109.46700 * 183.83590 * 4 2 1 33 33 H 1.09001 * 109.47235 * 192.51315 * 6 5 4 34 34 H 1.09007 * 109.47612 * 312.51151 * 6 5 4 35 35 H 0.96999 * 120.00305 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47041 * 300.00403 * 17 15 5 37 37 H 1.09002 * 109.47029 * 59.99839 * 17 15 5 38 38 H 1.09000 * 109.46873 * 300.00374 * 18 17 15 39 39 H 1.08994 * 109.47310 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47325 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47278 * 60.00530 * 19 18 17 42 42 H 1.08991 * 109.47293 * 299.99725 * 20 19 18 43 43 H 1.09002 * 109.47354 * 179.97438 * 20 19 18 44 44 H 0.96705 * 113.99866 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6272 -2.1303 1.2040 6 6 1.7039 -2.7444 2.5362 7 6 0.5857 -2.2167 3.3978 8 1 -0.1124 -1.4974 2.9957 9 6 0.4539 -2.6522 4.6993 10 7 1.3036 -3.5285 5.1888 11 14 -0.9327 -1.9985 5.7670 12 1 -2.1259 -2.8696 5.6168 13 1 -0.5014 -1.9904 7.1879 14 1 -1.2728 -0.6160 5.3449 15 6 2.4297 -2.8828 0.2304 16 1 2.5806 -2.2761 -0.6623 17 6 1.6969 -4.1718 -0.1468 18 6 2.5329 -4.9559 -1.1603 19 6 3.8893 -5.3023 -0.5432 20 6 4.6222 -4.0133 -0.1659 21 6 3.7864 -3.2293 0.8470 22 1 3.6355 -3.8360 1.7399 23 8 4.4708 -2.0253 1.1994 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6215 -0.2485 2.1379 32 1 3.1277 -0.6621 1.2844 33 1 1.6114 -3.8265 2.4434 34 1 2.6621 -2.4997 2.9946 35 1 1.2106 -3.8351 6.1044 36 1 1.5459 -4.7785 0.7461 37 1 0.7303 -3.9250 -0.5860 38 1 2.6842 -4.3493 -2.0532 39 1 2.0110 -5.8744 -1.4287 40 1 4.4848 -5.8613 -1.2650 41 1 3.7381 -5.9089 0.3497 42 1 4.7736 -3.4068 -1.0588 43 1 5.5884 -4.2601 0.2741 44 1 5.3407 -2.1693 1.5967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226245220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = -94.231749 kcal Electronic energy + Delta-G solvation = -21007.604751 eV Core-core repulsion = 18150.874111 eV Total energy + Delta-G solvation = -2856.730640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82751 -37.69229 -36.46789 -35.46589 -34.19017 -31.01291 -29.96445 -28.71396 -27.84017 -25.91779 -24.07803 -23.45916 -22.02575 -20.85544 -20.07885 -18.46610 -18.17093 -16.83030 -16.49716 -16.17498 -15.95020 -15.40998 -14.95101 -14.74558 -14.56536 -14.17711 -14.06362 -13.74900 -13.71486 -13.21838 -12.99727 -12.88708 -12.78677 -12.61773 -12.50130 -12.43386 -12.24780 -11.88091 -11.73028 -11.62659 -11.57959 -11.46683 -11.17081 -11.08200 -10.99595 -10.64599 -10.52348 -8.69827 -8.15784 -6.24558 1.38126 1.39315 1.50383 2.40727 3.14546 3.19679 3.42109 3.80691 3.96483 4.07036 4.18594 4.26117 4.33004 4.36266 4.45578 4.47186 4.52150 4.62401 4.84297 4.87361 4.91538 4.93362 5.02509 5.09094 5.10475 5.14079 5.20937 5.23864 5.26480 5.27960 5.36317 5.36968 5.40950 5.51109 5.59376 5.61194 5.68911 5.72600 6.17594 6.54719 6.80182 6.87891 6.94026 7.44289 8.93578 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.008334 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.584568 B = 3359.068687 C = 4303.074176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.062 3.938 5 N -0.528 5.528 6 C 0.221 3.779 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.093 3.907 16 H 0.083 0.917 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.137 4.137 21 C 0.076 3.924 22 H 0.023 0.977 23 O -0.569 6.569 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.054 0.946 33 H -0.001 1.001 34 H -0.037 1.037 35 H 0.262 0.738 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 1.268 -13.781 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.066 4.066 5 N -0.250 5.250 6 C 0.095 3.905 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.016 4.016 16 H 0.101 0.899 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.175 4.175 21 C 0.016 3.984 22 H 0.041 0.959 23 O -0.377 6.377 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.017 0.983 34 H -0.019 1.019 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.399 1.439 -14.006 14.751 hybrid contribution 0.702 -0.239 1.877 2.018 sum 5.101 1.199 -12.129 13.213 Atomic orbital electron populations 1.21616 0.95249 1.01348 1.00316 1.21052 0.96142 0.95903 0.97086 1.21743 1.00745 0.95170 1.01857 1.22216 0.98650 0.88489 0.97226 1.62160 1.52696 1.02152 1.08017 1.19203 0.93438 0.92869 0.85006 1.21526 1.12797 1.24469 0.96599 0.92635 1.25826 0.98874 0.95586 0.99323 1.70080 1.38419 1.32967 1.16067 0.85505 0.79273 0.78956 0.77633 1.19880 1.20770 1.19257 1.21825 0.88739 0.95518 0.95527 0.89898 1.21492 0.99164 0.94803 0.98794 1.21530 0.95264 1.00267 0.97785 1.21505 0.96529 0.96525 1.00832 1.22154 0.98655 0.97187 0.99515 1.22601 0.93844 0.85814 0.96117 0.95902 1.86532 1.35559 1.31735 1.83864 0.91894 0.93431 0.94740 0.91589 0.92818 0.91024 0.93572 0.94524 0.92801 0.98280 1.01945 0.92974 0.94514 0.91288 0.90438 0.90446 0.89261 0.93399 0.90399 0.91045 0.77351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.07 71.98 0.65 -3.56 16 2 C -0.08 -2.72 2.95 -10.79 -0.03 -2.75 16 3 C -0.14 -3.76 9.19 71.98 0.66 -3.09 16 4 C 0.06 2.58 4.04 86.31 0.35 2.92 16 5 N -0.53 -23.38 3.67 -875.53 -3.21 -26.59 16 6 C 0.22 12.06 3.24 85.56 0.28 12.33 16 7 C -0.52 -30.33 8.37 25.60 0.21 -30.11 16 8 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 9 C 0.00 0.07 5.46 84.65 0.46 0.54 16 10 N -0.93 -57.54 13.29 21.44 0.28 -57.25 16 11 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.09 3.38 1.91 44.91 0.09 3.47 16 16 H 0.08 2.80 6.36 -2.39 -0.02 2.79 16 17 C -0.10 -3.48 5.31 30.59 0.16 -3.32 16 18 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 19 C -0.12 -2.71 5.92 30.59 0.18 -2.53 16 20 C -0.14 -3.45 5.54 30.58 0.17 -3.28 16 21 C 0.08 2.65 2.19 30.58 0.07 2.72 16 22 H 0.02 0.98 6.49 -2.39 -0.02 0.96 16 23 O -0.57 -19.69 9.99 -148.98 -1.49 -21.18 16 24 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.75 7.72 -2.39 -0.02 1.73 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 2.06 6.59 -2.39 -0.02 2.04 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.75 7.09 -2.39 -0.02 1.73 16 32 H 0.05 2.28 5.04 -2.39 -0.01 2.27 16 33 H 0.00 -0.05 6.21 -2.39 -0.01 -0.06 16 34 H -0.04 -2.24 6.99 -2.38 -0.02 -2.25 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.04 1.45 6.73 -2.39 -0.02 1.43 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.38 10.09 9.08 -74.05 -0.67 9.42 16 Total: -1.00 -67.12 328.94 1.32 -65.80 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.28 Total: 20.36 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.43 Total: -29.14 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.93 Total: -83.84 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.49 Total: -21.18 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -67.12 1.32 -65.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226245220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.432 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds