Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47466 * 2 1 4 4 C 1.53000 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47075 * 304.99522 * 4 3 2 6 6 C 1.52995 * 109.47170 * 64.99653 * 4 3 2 7 7 C 1.53008 * 109.47108 * 181.83033 * 6 4 3 8 8 O 1.42900 * 109.46732 * 184.13625 * 7 6 4 9 9 C 1.52998 * 109.47192 * 184.99704 * 4 3 2 10 10 N 1.46902 * 109.47422 * 57.78183 * 9 4 3 11 11 C 1.46893 * 111.00549 * 185.11855 * 10 9 4 12 12 C 1.53001 * 109.47514 * 184.65941 * 11 10 9 13 13 C 1.50706 * 115.54684 * 294.22284 * 12 11 10 14 14 H 1.08000 * 119.99426 * 95.35543 * 13 12 11 15 15 C 1.37869 * 119.99992 * 275.35674 * 13 12 11 16 16 N 1.31515 * 120.00361 * 6.22992 * 15 13 12 17 17 Si 1.86806 * 119.99679 * 186.22855 * 15 13 12 18 18 H 1.48498 * 109.46814 * 179.97438 * 17 15 13 19 19 H 1.48492 * 109.47217 * 300.00020 * 17 15 13 20 20 H 1.48501 * 109.47050 * 60.00199 * 17 15 13 21 21 C 1.52999 * 117.50015 * 79.89339 * 12 11 10 22 22 C 1.53000 * 117.49897 * 148.55875 * 12 11 10 23 23 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47074 * 300.00064 * 1 2 3 25 25 H 1.08999 * 109.46658 * 60.00444 * 1 2 3 26 26 H 1.08999 * 109.47173 * 239.98977 * 2 1 3 27 27 H 1.09010 * 109.46941 * 119.99915 * 2 1 3 28 28 H 1.08999 * 109.47760 * 59.99337 * 3 2 1 29 29 H 1.09001 * 109.47200 * 299.99816 * 3 2 1 30 30 H 1.09006 * 109.47315 * 301.82907 * 6 4 3 31 31 H 1.09001 * 109.47243 * 61.83070 * 6 4 3 32 32 H 1.09002 * 109.46841 * 304.14095 * 7 6 4 33 33 H 1.09003 * 109.46758 * 64.13832 * 7 6 4 34 34 H 0.96700 * 113.99488 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47108 * 297.78152 * 9 4 3 36 36 H 1.09000 * 109.47510 * 177.78042 * 9 4 3 37 37 H 1.00900 * 110.99948 * 61.16231 * 10 9 4 38 38 H 1.09006 * 109.46901 * 64.65832 * 11 10 9 39 39 H 1.09001 * 109.47259 * 304.65880 * 11 10 9 40 40 H 0.96999 * 119.99939 * 355.22121 * 16 15 13 41 41 H 1.08996 * 117.49820 * 215.00365 * 21 12 11 42 42 H 1.09002 * 117.49590 * 0.02732 * 21 12 11 43 43 H 1.08998 * 117.49895 * 359.97087 * 22 12 11 44 44 H 1.08995 * 117.49883 * 144.97931 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8531 0.8428 6 6 4.0806 0.8325 -1.3063 7 6 5.6100 0.7907 -1.2864 8 8 6.0897 0.3109 -2.5441 9 6 4.0800 2.8794 0.1263 10 7 3.5466 3.4827 1.3549 11 6 3.9161 4.9013 1.4483 12 6 3.4444 5.4640 2.7906 13 6 1.9507 5.5201 2.9831 14 1 1.4419 4.7174 3.4959 15 6 1.2340 6.5962 2.5044 16 7 1.8319 7.5124 1.7745 17 14 -0.5866 6.7528 2.8925 18 1 -1.1215 7.9886 2.2666 19 1 -1.3104 5.5724 2.3560 20 1 -0.7748 6.8223 4.3639 21 6 4.3047 5.1703 4.0213 22 6 4.2805 6.5789 3.4223 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.6908 -0.1800 -1.4115 31 1 3.7447 1.4403 -2.1465 32 1 5.9985 1.7933 -1.1076 33 1 5.9448 0.1241 -0.4915 34 1 7.0535 0.2585 -2.6033 35 1 3.7499 3.4588 -0.7359 36 1 5.1693 2.8762 0.1664 37 1 3.8543 2.9745 2.1704 38 1 3.4434 5.4541 0.6364 39 1 4.9990 5.0005 1.3732 40 1 2.7902 7.4686 1.6307 41 1 3.7904 5.0177 4.9701 42 1 5.2070 4.5766 3.8745 43 1 5.1667 6.9112 2.8818 44 1 3.7502 7.3530 3.9768 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227448726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -60.578781 kcal Electronic energy + Delta-G solvation = -19653.487698 eV Core-core repulsion = 16798.216360 eV Total energy + Delta-G solvation = -2855.271338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.33572 -37.15470 -36.24227 -33.91842 -32.12926 -31.72023 -28.29274 -26.34202 -24.76368 -23.62837 -22.59218 -21.34446 -21.12396 -19.88679 -19.15632 -17.41288 -16.59004 -15.58303 -15.29770 -14.84842 -14.41533 -14.07810 -13.83083 -13.65585 -13.39656 -13.21165 -12.97808 -12.44069 -12.15495 -12.05469 -11.77812 -11.39375 -11.29202 -11.26784 -10.88940 -10.74625 -10.70063 -10.44183 -10.36512 -10.25495 -10.22111 -10.04446 -9.88103 -9.44174 -8.46835 -8.37748 -8.21965 -7.56489 -6.22935 -3.92996 3.50020 3.51702 3.69902 4.10246 4.58760 4.66350 4.84323 5.00366 5.12978 5.15701 5.25358 5.37004 5.39285 5.44402 5.47228 5.56280 5.70602 5.82872 5.92289 5.95911 5.98574 6.01905 6.09520 6.14448 6.21898 6.24673 6.31239 6.35259 6.39452 6.42361 6.55779 6.64270 6.71007 6.86781 6.90270 7.26305 7.36946 7.47245 7.86341 8.09707 8.40248 8.55387 8.99954 9.78893 11.16989 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.005696 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.967881 B = 4914.748119 C = 5999.925608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.078 4.078 5 H 0.065 0.935 6 C -0.114 4.114 7 C 0.071 3.929 8 O -0.578 6.578 9 C 0.060 3.940 10 N -0.663 5.663 11 C 0.104 3.896 12 C 0.028 3.972 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.913 5.913 17 Si 1.065 2.935 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.290 1.290 21 C -0.201 4.201 22 C -0.182 4.182 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.376 0.624 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.331 0.669 38 H 0.069 0.931 39 H -0.006 1.006 40 H 0.272 0.728 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -13.231 -4.216 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.097 4.097 5 H 0.084 0.916 6 C -0.152 4.152 7 C -0.007 4.007 8 O -0.383 6.383 9 C -0.069 4.069 10 N -0.293 5.293 11 C -0.025 4.025 12 C 0.028 3.972 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.180 4.180 16 N -0.549 5.549 17 Si 0.894 3.106 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.238 4.238 22 C -0.220 4.220 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.222 0.778 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.012 0.988 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.848 -12.180 -4.921 13.441 hybrid contribution 3.110 -0.923 0.702 3.319 sum 5.958 -13.102 -4.219 14.999 Atomic orbital electron populations 1.21760 0.96172 1.00830 1.02160 1.21611 0.95732 0.97807 1.01156 1.21542 0.93348 0.95597 1.03985 1.21072 0.96895 0.95571 0.96147 0.91626 1.21618 0.93010 1.01988 0.98617 1.22368 0.95847 0.97667 0.84789 1.86475 1.26442 1.89073 1.36275 1.22060 0.95294 0.94538 0.95056 1.60219 1.63065 1.03042 1.02935 1.21604 0.93463 0.87699 0.99760 1.19166 0.93972 0.96240 0.87858 1.21103 0.89316 1.07383 1.40713 0.93023 1.25675 1.05992 0.93010 0.93322 1.70738 1.12642 1.36924 1.34571 0.83597 0.75003 0.76067 0.75902 1.21062 1.21460 1.21724 1.22863 1.01531 0.99308 1.00097 1.22775 1.01630 0.91913 1.05688 0.93456 0.92418 0.92905 0.92617 0.92540 0.89174 0.92392 0.91105 0.91199 0.93332 0.93989 0.77786 0.91432 0.96556 0.85161 0.91306 0.98823 0.91694 0.90213 0.92058 0.91847 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.13 -1.52 5.69 -26.74 -0.15 -1.67 16 3 C -0.11 -1.53 4.58 -26.74 -0.12 -1.65 16 4 C -0.08 -1.03 2.13 -90.62 -0.19 -1.22 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.11 -1.38 4.89 -26.73 -0.13 -1.51 16 7 C 0.07 0.78 6.84 37.16 0.25 1.04 16 8 O -0.58 -6.46 13.66 -35.23 -0.48 -6.94 16 9 C 0.06 0.94 4.78 -3.82 -0.02 0.92 16 10 N -0.66 -12.56 5.47 -113.78 -0.62 -13.18 16 11 C 0.10 2.27 5.44 -3.83 -0.02 2.25 16 12 C 0.03 0.68 1.01 -155.66 -0.16 0.53 16 13 C -0.55 -14.95 8.75 -34.44 -0.30 -15.25 16 14 H 0.05 1.45 7.82 -52.49 -0.41 1.03 16 15 C 0.02 0.68 5.39 -17.82 -0.10 0.59 16 16 N -0.91 -27.00 13.57 55.43 0.75 -26.25 16 17 Si 1.07 25.27 29.91 -169.99 -5.08 20.18 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.20 -4.30 9.96 -26.69 -0.27 -4.56 16 22 C -0.18 -4.19 8.68 -26.69 -0.23 -4.42 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.09 1.53 7.38 -51.93 -0.38 1.15 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 6.48 -51.93 -0.34 0.49 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 2.44 9.12 45.56 0.42 2.85 16 35 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 36 H 0.02 0.24 6.50 -51.93 -0.34 -0.10 16 37 H 0.33 6.02 8.72 -39.29 -0.34 5.68 16 38 H 0.07 1.70 7.94 -51.93 -0.41 1.29 16 39 H -0.01 -0.13 8.08 -51.93 -0.42 -0.55 16 40 H 0.27 7.97 6.26 -40.82 -0.26 7.71 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -29.95 348.96 -8.68 -38.64 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.44 Total: 8.70 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.07 Total: -26.40 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.13 Total: -39.43 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.48 Total: -6.94 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.95 -8.68 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227448726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.943 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds