Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47466 * 2 1 4 4 C 1.53000 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47075 * 304.99522 * 4 3 2 6 6 C 1.52995 * 109.47170 * 64.99653 * 4 3 2 7 7 C 1.53008 * 109.47108 * 181.83033 * 6 4 3 8 8 O 1.42900 * 109.46732 * 184.13625 * 7 6 4 9 9 C 1.52998 * 109.47192 * 184.99704 * 4 3 2 10 10 N 1.46902 * 109.47422 * 57.78183 * 9 4 3 11 11 C 1.46893 * 111.00549 * 185.11855 * 10 9 4 12 12 C 1.53001 * 109.47514 * 184.65941 * 11 10 9 13 13 C 1.50706 * 115.54684 * 294.22284 * 12 11 10 14 14 H 1.08000 * 119.99426 * 95.35543 * 13 12 11 15 15 C 1.37869 * 119.99992 * 275.35674 * 13 12 11 16 16 N 1.31515 * 120.00361 * 6.22992 * 15 13 12 17 17 Si 1.86806 * 119.99679 * 186.22855 * 15 13 12 18 18 H 1.48498 * 109.46814 * 179.97438 * 17 15 13 19 19 H 1.48492 * 109.47217 * 300.00020 * 17 15 13 20 20 H 1.48501 * 109.47050 * 60.00199 * 17 15 13 21 21 C 1.52999 * 117.50015 * 79.89339 * 12 11 10 22 22 C 1.53000 * 117.49897 * 148.55875 * 12 11 10 23 23 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47074 * 300.00064 * 1 2 3 25 25 H 1.08999 * 109.46658 * 60.00444 * 1 2 3 26 26 H 1.08999 * 109.47173 * 239.98977 * 2 1 3 27 27 H 1.09010 * 109.46941 * 119.99915 * 2 1 3 28 28 H 1.08999 * 109.47760 * 59.99337 * 3 2 1 29 29 H 1.09001 * 109.47200 * 299.99816 * 3 2 1 30 30 H 1.09006 * 109.47315 * 301.82907 * 6 4 3 31 31 H 1.09001 * 109.47243 * 61.83070 * 6 4 3 32 32 H 1.09002 * 109.46841 * 304.14095 * 7 6 4 33 33 H 1.09003 * 109.46758 * 64.13832 * 7 6 4 34 34 H 0.96700 * 113.99488 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47108 * 297.78152 * 9 4 3 36 36 H 1.09000 * 109.47510 * 177.78042 * 9 4 3 37 37 H 1.00900 * 110.99948 * 61.16231 * 10 9 4 38 38 H 1.09006 * 109.46901 * 64.65832 * 11 10 9 39 39 H 1.09001 * 109.47259 * 304.65880 * 11 10 9 40 40 H 0.96999 * 119.99939 * 355.22121 * 16 15 13 41 41 H 1.08996 * 117.49820 * 215.00365 * 21 12 11 42 42 H 1.09002 * 117.49590 * 0.02732 * 21 12 11 43 43 H 1.08998 * 117.49895 * 359.97087 * 22 12 11 44 44 H 1.08995 * 117.49883 * 144.97931 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8531 0.8428 6 6 4.0806 0.8325 -1.3063 7 6 5.6100 0.7907 -1.2864 8 8 6.0897 0.3109 -2.5441 9 6 4.0800 2.8794 0.1263 10 7 3.5466 3.4827 1.3549 11 6 3.9161 4.9013 1.4483 12 6 3.4444 5.4640 2.7906 13 6 1.9507 5.5201 2.9831 14 1 1.4419 4.7174 3.4959 15 6 1.2340 6.5962 2.5044 16 7 1.8319 7.5124 1.7745 17 14 -0.5866 6.7528 2.8925 18 1 -1.1215 7.9886 2.2666 19 1 -1.3104 5.5724 2.3560 20 1 -0.7748 6.8223 4.3639 21 6 4.3047 5.1703 4.0213 22 6 4.2805 6.5789 3.4223 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.6908 -0.1800 -1.4115 31 1 3.7447 1.4403 -2.1465 32 1 5.9985 1.7933 -1.1076 33 1 5.9448 0.1241 -0.4915 34 1 7.0535 0.2585 -2.6033 35 1 3.7499 3.4588 -0.7359 36 1 5.1693 2.8762 0.1664 37 1 3.8543 2.9745 2.1704 38 1 3.4434 5.4541 0.6364 39 1 4.9990 5.0005 1.3732 40 1 2.7902 7.4686 1.6307 41 1 3.7904 5.0177 4.9701 42 1 5.2070 4.5766 3.8745 43 1 5.1667 6.9112 2.8818 44 1 3.7502 7.3530 3.9768 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227448726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -80.035696 kcal Electronic energy + Delta-G solvation = -19654.331413 eV Core-core repulsion = 16798.216360 eV Total energy + Delta-G solvation = -2856.115053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.59384 -38.70271 -37.25472 -35.28241 -33.85859 -33.18777 -29.38410 -27.78758 -26.76896 -25.00023 -23.72774 -22.98216 -22.31975 -21.33531 -20.76800 -18.53642 -18.24099 -16.84108 -16.48157 -16.05127 -15.77069 -15.60368 -15.35706 -15.09540 -14.87149 -14.55125 -14.29137 -14.04690 -13.52929 -13.31594 -13.14089 -12.86014 -12.67922 -12.59326 -12.35919 -12.21317 -12.18991 -11.94064 -11.88391 -11.52446 -11.35996 -11.31881 -11.15597 -10.79984 -10.42547 -10.37715 -10.18855 -9.07021 -8.43892 -6.13350 1.55903 1.63106 1.81350 2.63544 3.10562 3.31637 3.32780 3.51933 3.77300 4.01015 4.14000 4.19887 4.20124 4.35382 4.37557 4.42062 4.49493 4.51211 4.55305 4.58890 4.64892 4.75365 4.81321 4.82847 4.89108 4.97553 4.98818 5.08056 5.10894 5.13876 5.25308 5.28937 5.40976 5.44243 5.55032 5.56904 5.68646 6.21713 6.32030 6.39422 6.67639 6.83098 6.87897 7.64490 8.97189 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.005696 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.967881 B = 4914.748119 C = 5999.925608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.066 4.066 5 H 0.079 0.921 6 C -0.109 4.109 7 C 0.073 3.927 8 O -0.595 6.595 9 C 0.063 3.937 10 N -0.673 5.673 11 C 0.120 3.880 12 C -0.001 4.001 13 C -0.551 4.551 14 H 0.039 0.961 15 C -0.024 4.024 16 N -0.941 5.941 17 Si 1.105 2.895 18 H -0.289 1.289 19 H -0.277 1.277 20 H -0.275 1.275 21 C -0.172 4.172 22 C -0.186 4.186 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.396 0.604 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.339 0.661 38 H 0.031 0.969 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -15.303 -3.925 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.085 4.085 5 H 0.098 0.902 6 C -0.147 4.147 7 C -0.005 4.005 8 O -0.403 6.403 9 C -0.066 4.066 10 N -0.304 5.304 11 C -0.010 4.010 12 C -0.002 4.002 13 C -0.589 4.589 14 H 0.057 0.943 15 C -0.222 4.222 16 N -0.578 5.578 17 Si 0.929 3.071 18 H -0.215 1.215 19 H -0.203 1.203 20 H -0.200 1.200 21 C -0.209 4.209 22 C -0.225 4.225 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.245 0.755 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.157 0.843 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.792 -14.276 -4.622 15.477 hybrid contribution 2.867 -0.315 0.607 2.948 sum 6.660 -14.591 -4.015 16.534 Atomic orbital electron populations 1.21773 0.96151 1.01799 1.01325 1.21564 0.95763 0.96164 1.02178 1.21462 0.94308 0.96792 1.01668 1.20962 0.95940 0.94102 0.97501 0.90217 1.21533 0.94200 1.01921 0.97075 1.22306 0.94809 0.98004 0.85349 1.86420 1.28561 1.89020 1.36326 1.22088 0.96253 0.95472 0.92771 1.60107 1.63994 1.01796 1.04457 1.21232 0.93758 0.88926 0.97046 1.19243 0.92882 0.98038 0.90048 1.21351 0.91396 1.06556 1.39588 0.94283 1.26847 1.09365 0.92976 0.93023 1.70838 1.12270 1.38131 1.36583 0.83069 0.71278 0.76101 0.76625 1.21494 1.20324 1.20013 1.22863 1.01634 0.97937 0.98494 1.22697 1.01788 0.92035 1.05935 0.91569 0.93749 0.93297 0.91259 0.91675 0.92281 0.93905 0.90199 0.92621 0.93630 0.92282 0.75461 0.93338 0.94773 0.84343 0.95060 0.97253 0.92686 0.90443 0.88844 0.90245 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.91 71.98 0.71 -2.74 16 2 C -0.12 -2.68 5.69 30.59 0.17 -2.51 16 3 C -0.10 -2.94 4.58 30.59 0.14 -2.80 16 4 C -0.07 -1.64 2.13 -10.80 -0.02 -1.67 16 5 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.11 -2.43 4.89 30.60 0.15 -2.28 16 7 C 0.07 1.42 6.84 71.98 0.49 1.91 16 8 O -0.59 -11.86 13.66 -148.98 -2.04 -13.89 16 9 C 0.06 1.92 4.78 86.30 0.41 2.33 16 10 N -0.67 -25.14 5.47 -513.89 -2.81 -27.95 16 11 C 0.12 5.24 5.44 86.30 0.47 5.71 16 12 C 0.00 -0.07 1.01 -52.93 -0.05 -0.12 16 13 C -0.55 -30.43 8.75 25.60 0.22 -30.20 16 14 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 15 C -0.02 -1.34 5.39 84.65 0.46 -0.88 16 16 N -0.94 -56.96 13.57 21.44 0.29 -56.67 16 17 Si 1.11 51.43 29.91 68.60 2.05 53.48 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.17 -7.05 9.96 30.62 0.30 -6.74 16 22 C -0.19 -8.51 8.68 30.62 0.27 -8.25 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.39 6.53 -2.39 -0.02 1.37 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 2.03 7.38 -2.39 -0.02 2.01 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.65 6.48 -2.38 -0.02 1.63 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 0.91 6.32 -2.39 -0.02 0.89 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.40 4.11 9.12 -74.06 -0.68 3.43 16 35 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.03 0.93 6.50 -2.39 -0.02 0.92 16 37 H 0.34 11.77 8.72 -89.69 -0.78 10.99 16 38 H 0.03 1.58 7.94 -2.38 -0.02 1.57 16 39 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 40 H 0.26 15.88 6.26 -92.71 -0.58 15.30 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -64.84 348.96 0.91 -63.93 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.31 Total: 29.35 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.73 Total: -48.24 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.52 Total: -84.62 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -2.04 Total: -13.89 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -64.84 0.91 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227448726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.109 kcal (2) G-P(sol) polarization free energy of solvation -64.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds