Wall clock time and date at job start Mon Mar 30 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.53001 * 109.47089 * 185.16728 * 3 2 1 5 5 H 1.08993 * 109.47284 * 53.64617 * 4 3 2 6 6 C 1.52997 * 109.46969 * 293.64246 * 4 3 2 7 7 C 1.52997 * 109.47646 * 304.10928 * 6 4 3 8 8 O 1.42900 * 109.47609 * 185.24856 * 7 6 4 9 9 C 1.53006 * 109.47211 * 173.64922 * 4 3 2 10 10 N 1.46896 * 109.47202 * 179.97438 * 9 4 3 11 11 C 1.46902 * 110.99907 * 183.88735 * 10 9 4 12 12 C 1.53007 * 109.47015 * 185.44996 * 11 10 9 13 13 C 1.50699 * 115.54664 * 296.15562 * 12 11 10 14 14 H 1.08008 * 119.99604 * 275.37562 * 13 12 11 15 15 C 1.37877 * 120.00418 * 95.10630 * 13 12 11 16 16 N 1.31517 * 120.00078 * 176.19456 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 356.19062 * 15 13 12 18 18 H 1.48500 * 109.47193 * 95.13234 * 17 15 13 19 19 H 1.48496 * 109.47281 * 215.13586 * 17 15 13 20 20 H 1.48505 * 109.47142 * 335.13508 * 17 15 13 21 21 C 1.52993 * 117.49978 * 81.82181 * 12 11 10 22 22 C 1.52994 * 117.49896 * 150.48063 * 12 11 10 23 23 H 1.09002 * 109.46487 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47305 * 299.99662 * 1 2 3 25 25 H 1.08996 * 109.47481 * 60.00463 * 1 2 3 26 26 H 1.08993 * 109.47799 * 239.99569 * 2 1 3 27 27 H 1.09002 * 109.47217 * 119.99213 * 2 1 3 28 28 H 1.09000 * 109.47530 * 65.16613 * 3 2 1 29 29 H 1.09003 * 109.47458 * 305.16513 * 3 2 1 30 30 H 1.09006 * 109.47016 * 64.11326 * 6 4 3 31 31 H 1.09001 * 109.47349 * 184.10787 * 6 4 3 32 32 H 1.09004 * 109.46985 * 305.25166 * 7 6 4 33 33 H 1.09006 * 109.46859 * 65.24839 * 7 6 4 34 34 H 0.96695 * 113.99971 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47107 * 59.92534 * 9 4 3 36 36 H 1.09005 * 109.46675 * 299.92953 * 9 4 3 37 37 H 1.00909 * 110.99821 * 307.83576 * 10 9 4 38 38 H 1.08997 * 109.47515 * 65.44885 * 11 10 9 39 39 H 1.08998 * 109.46908 * 305.44248 * 11 10 9 40 40 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 41 41 H 1.09003 * 117.50069 * 215.00587 * 21 12 11 42 42 H 1.09003 * 117.50090 * 0.02562 * 21 12 11 43 43 H 1.08995 * 117.50085 * 359.97438 * 22 12 11 44 44 H 1.09005 * 117.49474 * 144.97040 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4446 -0.1299 5 1 3.8554 0.8611 -1.0033 6 6 4.1840 0.8274 1.1255 7 6 3.6936 1.5843 2.3613 8 8 4.3649 1.0884 3.5213 9 6 4.0608 2.8831 -0.2891 10 7 5.5245 2.8851 -0.4132 11 6 6.0456 4.2572 -0.4755 12 6 7.5521 4.2190 -0.7402 13 6 8.3857 3.5783 0.3395 14 1 8.7063 4.1603 1.1910 15 6 8.7344 2.2478 0.2431 16 7 9.5235 1.7078 1.1460 17 14 8.0858 1.2123 -1.1699 18 1 9.0886 1.1855 -2.2649 19 1 7.8348 -0.1719 -0.6946 20 1 6.8185 1.8003 -1.6735 21 6 8.0105 4.0364 -2.1884 22 6 8.1656 5.3956 -1.5018 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8898 27 1 1.8934 -0.5137 0.8901 28 1 1.7541 1.9290 0.9326 29 1 1.6030 1.9824 -0.8401 30 1 3.8887 -0.2193 1.1994 31 1 5.2703 0.8950 1.0654 32 1 3.9065 2.6469 2.2448 33 1 2.6191 1.4392 2.4736 34 1 4.1028 1.5241 4.3437 35 1 3.7687 3.4669 0.5837 36 1 3.6203 3.3225 -1.1842 37 1 5.9521 2.3698 0.3417 38 1 5.8559 4.7613 0.4721 39 1 5.5489 4.7983 -1.2808 40 1 9.7685 0.7716 1.0784 41 1 8.9150 3.4529 -2.3603 42 1 7.2389 3.9439 -2.9527 43 1 7.4960 6.1967 -1.8146 44 1 9.1721 5.7066 -1.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227448733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:12 Heat of formation + Delta-G solvation = -40.445888 kcal Electronic energy + Delta-G solvation = -20261.499777 eV Core-core repulsion = 17407.101467 eV Total energy + Delta-G solvation = -2854.398310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.62040 -37.10275 -35.96649 -34.18076 -31.96075 -31.73945 -28.20693 -26.60090 -25.29588 -23.73655 -23.38837 -21.54257 -21.13597 -19.06417 -18.62768 -17.49251 -16.31048 -15.83001 -15.40549 -14.80303 -14.44660 -14.32915 -14.03987 -13.73928 -13.42943 -13.23359 -12.83935 -12.43826 -12.27494 -12.09410 -11.86287 -11.71172 -11.45548 -11.33592 -10.96999 -10.85809 -10.60110 -10.40185 -10.32282 -10.20059 -10.13660 -9.77746 -9.68662 -9.34358 -8.90940 -8.52925 -8.35612 -7.30028 -5.97566 -4.04288 3.49593 3.62254 3.93518 4.35457 4.59666 4.68567 4.86118 4.94113 4.99036 5.12602 5.22147 5.30312 5.36433 5.38817 5.48581 5.58345 5.61306 5.73156 5.76274 5.81081 5.87938 5.91711 5.96305 6.07216 6.17254 6.19874 6.25398 6.27071 6.35995 6.43824 6.46673 6.58167 6.60191 6.61835 6.85247 7.16644 7.23707 7.79511 7.84666 7.90034 8.17227 8.59996 9.01714 9.65644 11.12078 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.006577 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.997211 B = 4256.496453 C = 4625.146089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.085 4.085 5 H 0.083 0.917 6 C -0.122 4.122 7 C 0.074 3.926 8 O -0.571 6.571 9 C 0.057 3.943 10 N -0.676 5.676 11 C 0.100 3.900 12 C 0.008 3.992 13 C -0.498 4.498 14 H 0.071 0.929 15 C 0.081 3.919 16 N -0.900 5.900 17 Si 0.837 3.163 18 H -0.295 1.295 19 H -0.304 1.304 20 H -0.178 1.178 21 C -0.191 4.191 22 C -0.187 4.187 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.353 0.647 38 H 0.022 0.978 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 -0.410 -1.451 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.103 4.103 5 H 0.101 0.899 6 C -0.160 4.160 7 C -0.003 4.003 8 O -0.376 6.376 9 C -0.073 4.073 10 N -0.311 5.311 11 C -0.029 4.029 12 C 0.007 3.993 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.122 4.122 16 N -0.537 5.537 17 Si 0.665 3.335 18 H -0.223 1.223 19 H -0.231 1.231 20 H -0.100 1.100 21 C -0.228 4.228 22 C -0.225 4.225 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.220 0.780 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.175 0.825 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.791 -1.036 -2.508 17.009 hybrid contribution -0.365 -0.018 0.669 0.762 sum -17.156 -1.053 -1.839 17.286 Atomic orbital electron populations 1.21774 0.96226 1.01310 1.01545 1.21571 0.95361 0.97154 1.02318 1.21703 0.95070 0.96755 1.01924 1.21186 0.94123 0.96988 0.98034 0.89852 1.21586 1.02372 0.99670 0.92360 1.22336 0.94677 0.97383 0.85936 1.86544 1.68565 1.65087 1.17357 1.22062 0.90708 0.95133 0.99396 1.60989 1.02567 1.15424 1.52084 1.21507 0.95295 0.88279 0.97800 1.19355 0.91312 0.97676 0.90957 1.20261 1.31951 0.95402 1.05905 0.91081 1.25015 0.93600 0.97626 0.95993 1.69924 1.34692 1.13304 1.35742 0.87613 0.84263 0.78812 0.82851 1.22298 1.23141 1.09964 1.22813 1.02306 1.00074 0.97607 1.22883 1.01587 0.90951 1.07096 0.93018 0.92996 0.92884 0.91928 0.91817 0.91936 0.91916 0.91350 0.90199 0.93570 0.93945 0.77967 0.95950 0.91724 0.82475 0.95934 0.93564 0.92793 0.90036 0.90803 0.91330 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.27 5.59 -26.73 -0.15 -1.42 16 3 C -0.12 -1.26 4.40 -26.73 -0.12 -1.38 16 4 C -0.08 -1.16 2.39 -90.62 -0.22 -1.38 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.12 -1.88 4.83 -26.73 -0.13 -2.01 16 7 C 0.07 1.03 6.27 37.16 0.23 1.27 16 8 O -0.57 -8.77 13.66 -35.23 -0.48 -9.25 16 9 C 0.06 0.86 4.95 -3.82 -0.02 0.84 16 10 N -0.68 -13.16 3.64 -113.78 -0.41 -13.57 16 11 C 0.10 2.03 5.54 -3.82 -0.02 2.01 16 12 C 0.01 0.19 1.36 -155.66 -0.21 -0.02 16 13 C -0.50 -13.96 8.99 -34.44 -0.31 -14.27 16 14 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 15 C 0.08 2.33 5.29 -17.82 -0.09 2.23 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.84 21.22 22.90 -169.99 -3.89 17.33 16 18 H -0.30 -7.72 7.08 56.52 0.40 -7.32 16 19 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 20 H -0.18 -4.13 4.60 56.52 0.26 -3.87 16 21 C -0.19 -4.20 7.24 -26.70 -0.19 -4.39 16 22 C -0.19 -3.91 9.93 -26.70 -0.27 -4.17 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.67 6.96 -51.93 -0.36 0.31 16 28 H 0.06 0.64 6.12 -51.93 -0.32 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 31 H 0.08 1.53 6.28 -51.93 -0.33 1.20 16 32 H 0.05 0.66 6.30 -51.93 -0.33 0.33 16 33 H 0.04 0.49 6.53 -51.93 -0.34 0.15 16 34 H 0.37 3.87 9.12 45.56 0.42 4.28 16 35 H 0.02 0.33 6.43 -51.93 -0.33 0.00 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.35 7.66 4.61 -39.29 -0.18 7.48 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 41 H 0.08 1.94 6.52 -51.93 -0.34 1.60 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -31.63 329.48 -7.42 -39.05 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.24 Total: 12.28 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -1.13 Total: -23.60 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.36 Total: -40.76 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.48 Total: -9.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -3.89 Total: 17.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.63 -7.42 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227448733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.400 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds