Wall clock time and date at job start Mon Mar 30 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.53001 * 109.47089 * 185.16728 * 3 2 1 5 5 H 1.08993 * 109.47284 * 53.64617 * 4 3 2 6 6 C 1.52997 * 109.46969 * 293.64246 * 4 3 2 7 7 C 1.52997 * 109.47646 * 304.10928 * 6 4 3 8 8 O 1.42900 * 109.47609 * 185.24856 * 7 6 4 9 9 C 1.53006 * 109.47211 * 173.64922 * 4 3 2 10 10 N 1.46896 * 109.47202 * 179.97438 * 9 4 3 11 11 C 1.46902 * 110.99907 * 183.88735 * 10 9 4 12 12 C 1.53007 * 109.47015 * 185.44996 * 11 10 9 13 13 C 1.50699 * 115.54664 * 296.15562 * 12 11 10 14 14 H 1.08008 * 119.99604 * 275.37562 * 13 12 11 15 15 C 1.37877 * 120.00418 * 95.10630 * 13 12 11 16 16 N 1.31517 * 120.00078 * 176.19456 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 356.19062 * 15 13 12 18 18 H 1.48500 * 109.47193 * 95.13234 * 17 15 13 19 19 H 1.48496 * 109.47281 * 215.13586 * 17 15 13 20 20 H 1.48505 * 109.47142 * 335.13508 * 17 15 13 21 21 C 1.52993 * 117.49978 * 81.82181 * 12 11 10 22 22 C 1.52994 * 117.49896 * 150.48063 * 12 11 10 23 23 H 1.09002 * 109.46487 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47305 * 299.99662 * 1 2 3 25 25 H 1.08996 * 109.47481 * 60.00463 * 1 2 3 26 26 H 1.08993 * 109.47799 * 239.99569 * 2 1 3 27 27 H 1.09002 * 109.47217 * 119.99213 * 2 1 3 28 28 H 1.09000 * 109.47530 * 65.16613 * 3 2 1 29 29 H 1.09003 * 109.47458 * 305.16513 * 3 2 1 30 30 H 1.09006 * 109.47016 * 64.11326 * 6 4 3 31 31 H 1.09001 * 109.47349 * 184.10787 * 6 4 3 32 32 H 1.09004 * 109.46985 * 305.25166 * 7 6 4 33 33 H 1.09006 * 109.46859 * 65.24839 * 7 6 4 34 34 H 0.96695 * 113.99971 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47107 * 59.92534 * 9 4 3 36 36 H 1.09005 * 109.46675 * 299.92953 * 9 4 3 37 37 H 1.00909 * 110.99821 * 307.83576 * 10 9 4 38 38 H 1.08997 * 109.47515 * 65.44885 * 11 10 9 39 39 H 1.08998 * 109.46908 * 305.44248 * 11 10 9 40 40 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 41 41 H 1.09003 * 117.50069 * 215.00587 * 21 12 11 42 42 H 1.09003 * 117.50090 * 0.02562 * 21 12 11 43 43 H 1.08995 * 117.50085 * 359.97438 * 22 12 11 44 44 H 1.09005 * 117.49474 * 144.97040 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4446 -0.1299 5 1 3.8554 0.8611 -1.0033 6 6 4.1840 0.8274 1.1255 7 6 3.6936 1.5843 2.3613 8 8 4.3649 1.0884 3.5213 9 6 4.0608 2.8831 -0.2891 10 7 5.5245 2.8851 -0.4132 11 6 6.0456 4.2572 -0.4755 12 6 7.5521 4.2190 -0.7402 13 6 8.3857 3.5783 0.3395 14 1 8.7063 4.1603 1.1910 15 6 8.7344 2.2478 0.2431 16 7 9.5235 1.7078 1.1460 17 14 8.0858 1.2123 -1.1699 18 1 9.0886 1.1855 -2.2649 19 1 7.8348 -0.1719 -0.6946 20 1 6.8185 1.8003 -1.6735 21 6 8.0105 4.0364 -2.1884 22 6 8.1656 5.3956 -1.5018 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8898 27 1 1.8934 -0.5137 0.8901 28 1 1.7541 1.9290 0.9326 29 1 1.6030 1.9824 -0.8401 30 1 3.8887 -0.2193 1.1994 31 1 5.2703 0.8950 1.0654 32 1 3.9065 2.6469 2.2448 33 1 2.6191 1.4392 2.4736 34 1 4.1028 1.5241 4.3437 35 1 3.7687 3.4669 0.5837 36 1 3.6203 3.3225 -1.1842 37 1 5.9521 2.3698 0.3417 38 1 5.8559 4.7613 0.4721 39 1 5.5489 4.7983 -1.2808 40 1 9.7685 0.7716 1.0784 41 1 8.9150 3.4529 -2.3603 42 1 7.2389 3.9439 -2.9527 43 1 7.4960 6.1967 -1.8146 44 1 9.1721 5.7066 -1.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227448733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:12 Heat of formation + Delta-G solvation = -63.070018 kcal Electronic energy + Delta-G solvation = -20262.480833 eV Core-core repulsion = 17407.101467 eV Total energy + Delta-G solvation = -2855.379366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82619 -38.72234 -37.11152 -35.36780 -34.18360 -32.85259 -29.35572 -28.08025 -27.09998 -24.93523 -24.65030 -23.16520 -22.09819 -20.75004 -19.96415 -18.62454 -18.30449 -17.15324 -16.71300 -16.37656 -15.81256 -15.65069 -15.40203 -14.99953 -14.67981 -14.63716 -14.26424 -13.96501 -13.77860 -13.38316 -13.04383 -12.91883 -12.80631 -12.59234 -12.44825 -12.20338 -12.01269 -11.80835 -11.74254 -11.48137 -11.30371 -11.26440 -11.21146 -10.83004 -10.79541 -10.56590 -10.21020 -8.86856 -8.24327 -6.34064 1.42566 1.52398 1.89075 2.53331 3.10284 3.15485 3.35083 3.63134 3.89092 3.93775 4.03335 4.20251 4.24636 4.35020 4.36862 4.44773 4.49015 4.55928 4.60083 4.66953 4.76934 4.79686 4.85781 4.89290 4.91610 4.93659 5.03935 5.12327 5.14949 5.17811 5.21665 5.28457 5.41148 5.45044 5.49739 5.54322 5.57206 5.79281 6.28774 6.41738 6.55366 6.77331 6.88969 7.39286 8.88116 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.006577 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.997211 B = 4256.496453 C = 4625.146089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.123 4.123 7 C 0.076 3.924 8 O -0.600 6.600 9 C 0.056 3.944 10 N -0.690 5.690 11 C 0.109 3.891 12 C -0.020 4.020 13 C -0.491 4.491 14 H 0.023 0.977 15 C 0.029 3.971 16 N -0.953 5.953 17 Si 0.897 3.103 18 H -0.304 1.304 19 H -0.320 1.320 20 H -0.137 1.137 21 C -0.186 4.186 22 C -0.170 4.170 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.394 0.606 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.336 0.664 38 H 0.015 0.985 39 H 0.079 0.921 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 0.548 -3.422 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.161 4.161 7 C -0.001 4.001 8 O -0.408 6.408 9 C -0.072 4.072 10 N -0.323 5.323 11 C -0.020 4.020 12 C -0.021 4.021 13 C -0.529 4.529 14 H 0.041 0.959 15 C -0.168 4.168 16 N -0.593 5.593 17 Si 0.724 3.276 18 H -0.233 1.233 19 H -0.249 1.249 20 H -0.057 1.057 21 C -0.223 4.223 22 C -0.208 4.208 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.156 0.844 38 H 0.033 0.967 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.171 -0.033 -4.483 20.664 hybrid contribution 0.734 -0.243 1.388 1.588 sum -19.437 -0.275 -3.095 19.684 Atomic orbital electron populations 1.21747 0.94856 1.01837 1.02138 1.21562 0.96529 0.96567 1.01790 1.21643 0.92458 0.97462 1.02981 1.21139 0.96154 0.95731 0.96579 0.90699 1.21585 0.99711 1.00491 0.94319 1.22369 0.96121 0.96622 0.84967 1.86495 1.69523 1.65963 1.18825 1.22186 0.88022 0.96314 1.00701 1.60941 1.05147 1.14760 1.51421 1.21381 0.92965 0.89042 0.98584 1.19357 0.92774 0.99715 0.90235 1.20471 1.31631 0.94996 1.05797 0.95854 1.25797 0.93809 0.98943 0.98301 1.70075 1.37324 1.13488 1.38378 0.86802 0.85014 0.76333 0.79482 1.23265 1.24919 1.05738 1.22812 1.02044 1.00402 0.97023 1.22932 1.01502 0.91346 1.04980 0.92621 0.92458 0.92218 0.92309 0.92644 0.91084 0.90479 0.91113 0.94585 0.94069 0.90845 0.75710 0.95092 0.89697 0.84411 0.96727 0.90282 0.93168 0.92362 0.87749 0.87295 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.13 -2.21 5.59 30.59 0.17 -2.04 16 3 C -0.11 -1.95 4.40 30.59 0.13 -1.81 16 4 C -0.08 -1.93 2.39 -10.79 -0.03 -1.96 16 5 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 6 C -0.12 -3.72 4.83 30.59 0.15 -3.57 16 7 C 0.08 2.03 6.27 71.98 0.45 2.48 16 8 O -0.60 -18.29 13.66 -148.98 -2.04 -20.33 16 9 C 0.06 1.54 4.95 86.31 0.43 1.97 16 10 N -0.69 -25.36 3.64 -513.87 -1.87 -27.24 16 11 C 0.11 4.12 5.54 86.31 0.48 4.60 16 12 C -0.02 -0.89 1.36 -52.93 -0.07 -0.96 16 13 C -0.49 -28.35 8.99 25.60 0.23 -28.12 16 14 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 15 C 0.03 1.73 5.29 84.65 0.45 2.17 16 16 N -0.95 -62.24 13.96 21.45 0.30 -61.94 16 17 Si 0.90 45.09 22.90 68.60 1.57 46.66 16 18 H -0.30 -15.62 7.08 99.48 0.70 -14.91 16 19 H -0.32 -16.84 7.11 99.48 0.71 -16.13 16 20 H -0.14 -5.97 4.60 99.48 0.46 -5.52 16 21 C -0.19 -7.64 7.24 30.61 0.22 -7.42 16 22 C -0.17 -6.63 9.93 30.61 0.30 -6.32 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.05 6.96 -2.39 -0.02 1.04 16 28 H 0.07 1.18 6.12 -2.39 -0.01 1.17 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 2.04 6.93 -2.38 -0.02 2.03 16 31 H 0.04 1.40 6.28 -2.39 -0.01 1.39 16 32 H 0.04 1.13 6.30 -2.39 -0.02 1.11 16 33 H 0.07 1.50 6.53 -2.38 -0.02 1.48 16 34 H 0.39 7.90 9.12 -74.06 -0.68 7.22 16 35 H 0.03 0.82 6.43 -2.39 -0.02 0.80 16 36 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.34 14.52 4.61 -89.69 -0.41 14.11 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 40 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 41 H 0.06 2.68 6.52 -2.39 -0.02 2.66 16 42 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -71.61 329.48 1.22 -70.39 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.37 Total: 34.79 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.63 Total: -42.34 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -1.57 Total: -89.18 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -2.04 Total: -20.33 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.57 Total: 46.66 kcal Total: -71.61 1.22 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227448733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.317 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds