Wall clock time and date at job start Mon Mar 30 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 C 1.53000 * 109.47495 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47451 * 180.02562 * 4 3 2 6 6 C 1.42894 * 114.00166 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47399 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47173 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.46844 * 180.02562 * 8 7 6 10 10 C 1.46902 * 110.99651 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46866 * 185.37362 * 10 9 8 12 12 C 1.50704 * 115.55169 * 294.79949 * 11 10 9 13 13 H 1.08003 * 120.00137 * 95.20107 * 12 11 10 14 14 C 1.37877 * 119.99772 * 274.92999 * 12 11 10 15 15 N 1.31508 * 120.00319 * 355.41935 * 14 12 11 16 16 Si 1.86804 * 119.99690 * 175.41526 * 14 12 11 17 17 H 1.48503 * 109.46535 * 90.00186 * 16 14 12 18 18 H 1.48497 * 109.47005 * 209.99611 * 16 14 12 19 19 H 1.48495 * 109.47372 * 330.00093 * 16 14 12 20 20 C 1.53004 * 117.50138 * 80.46976 * 11 10 9 21 21 C 1.52998 * 117.50158 * 149.12768 * 11 10 9 22 22 H 1.09007 * 109.46815 * 59.99462 * 1 2 3 23 23 H 1.08995 * 109.47430 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47202 * 299.99997 * 1 2 3 25 25 H 1.09003 * 109.46732 * 240.00235 * 2 1 3 26 26 H 1.08997 * 109.47301 * 120.00783 * 2 1 3 27 27 H 1.09004 * 109.46893 * 59.99814 * 3 2 1 28 28 H 1.09001 * 109.47151 * 300.00294 * 3 2 1 29 29 H 1.09003 * 109.46732 * 60.00235 * 4 3 2 30 30 H 1.08997 * 109.47301 * 300.00783 * 4 3 2 31 31 H 1.08996 * 109.47028 * 59.99954 * 6 5 4 32 32 H 1.09001 * 109.47118 * 300.00136 * 6 5 4 33 33 H 1.08996 * 109.47170 * 59.99916 * 7 6 5 34 34 H 1.09005 * 109.46645 * 299.99728 * 7 6 5 35 35 H 1.08996 * 109.47366 * 59.99760 * 8 7 6 36 36 H 1.09005 * 109.46888 * 299.99304 * 8 7 6 37 37 H 1.00902 * 110.99737 * 303.94301 * 9 8 7 38 38 H 1.08995 * 109.47311 * 65.37944 * 10 9 8 39 39 H 1.08993 * 109.47076 * 305.37045 * 10 9 8 40 40 H 0.97004 * 120.00286 * 185.00248 * 15 14 12 41 41 H 1.08998 * 117.49727 * 215.00494 * 20 11 10 42 42 H 1.09000 * 117.49374 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49634 * 359.97438 * 21 11 10 44 44 H 1.08994 * 117.50107 * 144.97003 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0465 2.7896 0.0012 6 6 5.4710 2.9024 0.0013 7 6 5.8656 4.3807 0.0026 8 6 7.3908 4.5014 0.0020 9 7 7.7696 5.9207 0.0039 10 6 9.2305 6.0756 0.0040 11 6 9.5861 7.5574 0.1410 12 6 9.1703 8.4350 -1.0114 13 1 8.2359 8.9749 -0.9693 14 6 9.9855 8.5530 -2.1171 15 7 11.1656 7.9728 -2.1290 16 14 9.4135 9.5370 -3.5983 17 1 9.8352 10.9526 -3.4449 18 1 10.0175 8.9715 -4.8315 19 1 7.9333 9.4693 -3.6961 20 6 9.5451 8.1670 1.5438 21 6 10.8901 7.9073 0.8607 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8892 30 1 3.9331 0.9286 0.8908 31 1 5.8737 2.4193 -0.8889 32 1 5.8737 2.4184 0.8911 33 1 5.4629 4.8635 0.8930 34 1 5.4628 4.8650 -0.8870 35 1 7.7932 4.0187 -0.8886 36 1 7.7940 4.0170 0.8914 37 1 7.3543 6.4068 -0.7767 38 1 9.6369 5.6895 -0.9307 39 1 9.6545 5.5213 0.8411 40 1 11.7686 8.1151 -2.8754 41 1 9.2174 9.2027 1.6330 42 1 9.2652 7.5122 2.3690 43 1 11.4945 7.0819 1.2370 44 1 11.4475 8.7719 0.5004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229344804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:02 Heat of formation + Delta-G solvation = -53.422587 kcal Electronic energy + Delta-G solvation = -18397.206656 eV Core-core repulsion = 15542.245634 eV Total energy + Delta-G solvation = -2854.961022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.34650 -37.00417 -35.53405 -34.69102 -31.89352 -31.33003 -29.16582 -26.07370 -25.09916 -23.54556 -22.72951 -21.53937 -20.99094 -20.78493 -18.95596 -16.65116 -16.53816 -15.89664 -15.56743 -14.95750 -14.80161 -14.59164 -13.95800 -13.89527 -13.62430 -13.29361 -12.88253 -12.47789 -12.36573 -12.06567 -11.59905 -11.48066 -11.43137 -11.21540 -10.99544 -10.96923 -10.92811 -10.89465 -10.80707 -10.57311 -10.40766 -10.04407 -9.65057 -9.28891 -8.81502 -8.36255 -8.01810 -7.49004 -5.98783 -4.06086 3.29738 3.37059 3.40558 3.48871 4.42003 4.60234 4.65491 4.76205 4.97645 4.99102 5.09744 5.16161 5.26935 5.28951 5.36739 5.44798 5.48021 5.50246 5.55999 5.63809 5.66029 5.78640 5.83730 5.93297 5.97869 6.00092 6.20274 6.37663 6.43290 6.52278 6.61197 6.87024 6.89116 6.96761 7.16432 7.24566 7.54433 7.65107 7.91274 8.01409 8.28952 8.53806 8.97734 9.59546 11.08325 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002975 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.815113 B = 9409.000466 C =10033.195254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.061 3.939 5 O -0.389 6.389 6 C 0.066 3.934 7 C -0.115 4.115 8 C 0.062 3.938 9 N -0.681 5.681 10 C 0.106 3.894 11 C 0.045 3.955 12 C -0.491 4.491 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.348 0.652 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 -14.637 3.565 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.016 4.016 5 O -0.309 6.309 6 C -0.011 4.011 7 C -0.153 4.153 8 C -0.068 4.068 9 N -0.312 5.312 10 C -0.023 4.023 11 C 0.045 3.955 12 C -0.529 4.529 13 H 0.078 0.922 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.238 4.238 21 C -0.194 4.194 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.167 0.833 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.095 -14.500 4.092 20.631 hybrid contribution 0.359 0.025 -1.775 1.811 sum -13.735 -14.474 2.316 20.088 Atomic orbital electron populations 1.21757 0.95434 1.01653 1.02088 1.21447 0.96236 0.96164 1.02156 1.21556 0.93648 0.97091 1.03451 1.22486 0.94994 0.84155 0.99919 1.87872 1.21650 1.25938 1.95414 1.22484 0.80585 0.98181 0.99882 1.21474 0.96082 0.93872 1.03846 1.21776 0.93562 0.91758 0.99721 1.60407 1.11367 1.08696 1.50751 1.21446 0.85533 0.97322 0.97970 1.18752 0.96229 0.90891 0.89661 1.20480 1.05729 1.27161 0.99525 0.92182 1.25019 0.95051 0.95260 0.98156 1.70009 1.07437 1.42812 1.31543 0.86672 0.79111 0.80177 0.82564 1.20737 1.21363 1.19725 1.22868 1.03004 1.00234 0.97705 1.22499 0.90518 1.01783 1.04629 0.92584 0.92672 0.92575 0.91889 0.91882 0.91098 0.91106 0.93601 0.93582 0.93580 0.93441 0.90373 0.91299 0.96083 0.91861 0.83343 0.95158 0.94301 0.93171 0.90931 0.91778 0.92382 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -1.03 5.58 -26.73 -0.15 -1.18 16 4 C 0.06 0.61 5.94 37.16 0.22 0.83 16 5 O -0.39 -5.10 10.34 -35.23 -0.36 -5.47 16 6 C 0.07 0.81 5.94 37.16 0.22 1.03 16 7 C -0.11 -1.64 5.84 -26.73 -0.16 -1.79 16 8 C 0.06 1.00 5.68 -3.82 -0.02 0.97 16 9 N -0.68 -13.53 6.47 -113.78 -0.74 -14.26 16 10 C 0.11 2.40 5.54 -3.82 -0.02 2.38 16 11 C 0.05 1.13 1.65 -155.66 -0.26 0.87 16 12 C -0.49 -13.28 8.33 -34.44 -0.29 -13.57 16 13 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 14 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 15 N -0.88 -24.96 12.65 55.43 0.70 -24.26 16 16 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 C -0.20 -4.60 9.96 -26.69 -0.27 -4.86 16 21 C -0.16 -3.79 9.14 -26.70 -0.24 -4.04 16 22 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.35 7.21 8.31 -39.29 -0.33 6.88 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -28.34 360.56 -9.58 -37.92 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.75 Total: 3.75 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.85 Total: -19.14 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.04 Total: -38.52 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.36 Total: -5.47 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.34 -9.58 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229344804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.499 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds