Wall clock time and date at job start Mon Mar 30 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 C 1.53000 * 109.47495 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47451 * 180.02562 * 4 3 2 6 6 C 1.42894 * 114.00166 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47399 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47173 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.46844 * 180.02562 * 8 7 6 10 10 C 1.46902 * 110.99651 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46866 * 185.37362 * 10 9 8 12 12 C 1.50704 * 115.55169 * 294.79949 * 11 10 9 13 13 H 1.08003 * 120.00137 * 95.20107 * 12 11 10 14 14 C 1.37877 * 119.99772 * 274.92999 * 12 11 10 15 15 N 1.31508 * 120.00319 * 355.41935 * 14 12 11 16 16 Si 1.86804 * 119.99690 * 175.41526 * 14 12 11 17 17 H 1.48503 * 109.46535 * 90.00186 * 16 14 12 18 18 H 1.48497 * 109.47005 * 209.99611 * 16 14 12 19 19 H 1.48495 * 109.47372 * 330.00093 * 16 14 12 20 20 C 1.53004 * 117.50138 * 80.46976 * 11 10 9 21 21 C 1.52998 * 117.50158 * 149.12768 * 11 10 9 22 22 H 1.09007 * 109.46815 * 59.99462 * 1 2 3 23 23 H 1.08995 * 109.47430 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47202 * 299.99997 * 1 2 3 25 25 H 1.09003 * 109.46732 * 240.00235 * 2 1 3 26 26 H 1.08997 * 109.47301 * 120.00783 * 2 1 3 27 27 H 1.09004 * 109.46893 * 59.99814 * 3 2 1 28 28 H 1.09001 * 109.47151 * 300.00294 * 3 2 1 29 29 H 1.09003 * 109.46732 * 60.00235 * 4 3 2 30 30 H 1.08997 * 109.47301 * 300.00783 * 4 3 2 31 31 H 1.08996 * 109.47028 * 59.99954 * 6 5 4 32 32 H 1.09001 * 109.47118 * 300.00136 * 6 5 4 33 33 H 1.08996 * 109.47170 * 59.99916 * 7 6 5 34 34 H 1.09005 * 109.46645 * 299.99728 * 7 6 5 35 35 H 1.08996 * 109.47366 * 59.99760 * 8 7 6 36 36 H 1.09005 * 109.46888 * 299.99304 * 8 7 6 37 37 H 1.00902 * 110.99737 * 303.94301 * 9 8 7 38 38 H 1.08995 * 109.47311 * 65.37944 * 10 9 8 39 39 H 1.08993 * 109.47076 * 305.37045 * 10 9 8 40 40 H 0.97004 * 120.00286 * 185.00248 * 15 14 12 41 41 H 1.08998 * 117.49727 * 215.00494 * 20 11 10 42 42 H 1.09000 * 117.49374 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49634 * 359.97438 * 21 11 10 44 44 H 1.08994 * 117.50107 * 144.97003 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0465 2.7896 0.0012 6 6 5.4710 2.9024 0.0013 7 6 5.8656 4.3807 0.0026 8 6 7.3908 4.5014 0.0020 9 7 7.7696 5.9207 0.0039 10 6 9.2305 6.0756 0.0040 11 6 9.5861 7.5574 0.1410 12 6 9.1703 8.4350 -1.0114 13 1 8.2359 8.9749 -0.9693 14 6 9.9855 8.5530 -2.1171 15 7 11.1656 7.9728 -2.1290 16 14 9.4135 9.5370 -3.5983 17 1 9.8352 10.9526 -3.4449 18 1 10.0175 8.9715 -4.8315 19 1 7.9333 9.4693 -3.6961 20 6 9.5451 8.1670 1.5438 21 6 10.8901 7.9073 0.8607 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8892 30 1 3.9331 0.9286 0.8908 31 1 5.8737 2.4193 -0.8889 32 1 5.8737 2.4184 0.8911 33 1 5.4629 4.8635 0.8930 34 1 5.4628 4.8650 -0.8870 35 1 7.7932 4.0187 -0.8886 36 1 7.7940 4.0170 0.8914 37 1 7.3543 6.4068 -0.7767 38 1 9.6369 5.6895 -0.9307 39 1 9.6545 5.5213 0.8411 40 1 11.7686 8.1151 -2.8754 41 1 9.2174 9.2027 1.6330 42 1 9.2652 7.5122 2.3690 43 1 11.4945 7.0819 1.2370 44 1 11.4475 8.7719 0.5004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229344804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:01 Heat of formation + Delta-G solvation = -69.072459 kcal Electronic energy + Delta-G solvation = -18397.885285 eV Core-core repulsion = 15542.245634 eV Total energy + Delta-G solvation = -2855.639651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.30424 -38.74680 -36.66952 -35.71885 -33.95560 -32.58684 -29.93003 -27.84279 -26.79740 -24.44927 -23.93174 -22.81449 -22.43606 -21.82441 -20.87510 -17.91215 -17.56495 -17.44126 -16.68549 -16.56481 -15.97942 -15.88481 -15.65268 -15.06945 -14.82235 -14.36362 -14.12831 -13.84693 -13.38707 -13.29891 -13.11978 -12.93431 -12.83051 -12.50865 -12.43912 -12.31548 -12.14503 -11.96745 -11.86531 -11.81015 -11.78000 -11.49391 -11.18973 -10.82170 -10.54647 -10.36610 -9.91650 -9.13457 -8.06950 -6.19401 1.41026 1.43374 1.52656 2.43517 2.58531 3.19971 3.37857 3.77738 3.97373 4.00285 4.07960 4.19430 4.28012 4.31953 4.39229 4.40312 4.49337 4.53138 4.57694 4.68077 4.70202 4.73174 4.77509 4.91582 4.95018 4.99303 5.00246 5.04988 5.09644 5.20060 5.23519 5.29365 5.32449 5.34725 5.44433 5.66074 5.72375 5.82270 6.27186 6.36549 6.49176 6.63194 6.89991 7.48729 8.99618 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002975 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.815113 B = 9409.000466 C =10033.195254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.118 4.118 4 C 0.055 3.945 5 O -0.412 6.412 6 C 0.070 3.930 7 C -0.106 4.106 8 C 0.064 3.936 9 N -0.683 5.683 10 C 0.120 3.880 11 C 0.020 3.980 12 C -0.502 4.502 13 H 0.052 0.948 14 C 0.022 3.978 15 N -0.909 5.909 16 Si 0.947 3.053 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.179 4.179 21 C -0.161 4.161 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.340 0.660 38 H 0.002 0.998 39 H 0.051 0.949 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 -15.710 3.881 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.021 4.021 5 O -0.332 6.332 6 C -0.007 4.007 7 C -0.144 4.144 8 C -0.065 4.065 9 N -0.313 5.313 10 C -0.010 4.010 11 C 0.020 3.980 12 C -0.540 4.540 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.773 3.227 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.217 4.217 21 C -0.199 4.199 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.194 -15.581 4.420 22.207 hybrid contribution 0.668 0.344 -1.833 1.981 sum -14.526 -15.237 2.588 21.210 Atomic orbital electron populations 1.21767 0.94996 1.02268 1.01982 1.21432 0.96595 0.94875 1.02737 1.21560 0.92921 0.98269 1.02781 1.22691 0.95655 0.82886 1.00840 1.87836 1.21818 1.27966 1.95605 1.22403 0.80683 0.96682 1.00957 1.21333 0.94527 0.95434 1.03071 1.21826 0.94874 0.89502 1.00296 1.60398 1.09511 1.11091 1.50315 1.21191 0.87113 0.95732 0.96935 1.18944 0.96830 0.92111 0.90165 1.20700 1.05368 1.27321 1.00575 0.92969 1.25682 0.95123 0.96389 1.00546 1.70114 1.08323 1.44043 1.32234 0.85719 0.78858 0.78730 0.79351 1.20522 1.21265 1.19063 1.22844 1.01249 1.00373 0.97196 1.22404 0.90841 1.01356 1.05342 0.92777 0.91699 0.92651 0.91377 0.91211 0.91683 0.91884 0.92773 0.92473 0.92764 0.92071 0.91061 0.92161 0.95937 0.90681 0.84172 0.98022 0.93061 0.93291 0.91150 0.89606 0.91138 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.22 16 3 C -0.12 -1.88 5.58 30.59 0.17 -1.71 16 4 C 0.06 1.01 5.94 71.98 0.43 1.43 16 5 O -0.41 -10.23 10.34 -148.98 -1.54 -11.77 16 6 C 0.07 1.60 5.94 71.98 0.43 2.02 16 7 C -0.11 -2.88 5.84 30.60 0.18 -2.70 16 8 C 0.06 1.98 5.68 86.30 0.49 2.47 16 9 N -0.68 -26.55 6.47 -513.90 -3.32 -29.87 16 10 C 0.12 5.34 5.54 86.30 0.48 5.82 16 11 C 0.02 1.00 1.65 -52.92 -0.09 0.91 16 12 C -0.50 -27.21 8.33 25.60 0.21 -27.00 16 13 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 14 C 0.02 1.23 5.43 84.66 0.46 1.69 16 15 N -0.91 -52.00 12.65 21.45 0.27 -51.73 16 16 Si 0.95 43.36 29.54 68.60 2.03 45.38 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.18 -7.98 9.96 30.62 0.30 -7.68 16 21 C -0.16 -7.79 9.14 30.62 0.28 -7.51 16 22 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.34 14.05 8.31 -89.69 -0.75 13.30 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.26 14.16 8.32 -92.70 -0.77 13.39 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.43 8.14 -2.39 -0.02 3.42 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -59.23 360.56 1.84 -57.39 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.17 Total: 25.00 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 4.24 Total: -34.40 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.05 Total: -81.60 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.54 Total: -11.77 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -59.23 1.84 -57.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229344804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.686 kcal (2) G-P(sol) polarization free energy of solvation -59.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds