Wall clock time and date at job start Mon Mar 30 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47095 * 59.99879 * 3 2 1 5 5 C 1.52996 * 109.46947 * 300.00204 * 3 2 1 6 6 C 1.52999 * 109.47261 * 180.02562 * 3 2 1 7 7 C 1.53005 * 109.46920 * 64.99678 * 6 3 2 8 8 N 1.46502 * 109.46769 * 179.97438 * 7 6 3 9 9 C 1.36935 * 120.00179 * 270.00530 * 8 7 6 10 10 H 1.07998 * 119.99832 * 140.99567 * 9 8 7 11 11 C 1.38813 * 120.00089 * 320.98585 * 9 8 7 12 12 N 1.31612 * 119.99933 * 156.81684 * 11 9 8 13 13 Si 1.86802 * 119.99803 * 336.81933 * 11 9 8 14 14 H 1.48495 * 109.47292 * 95.31621 * 13 11 9 15 15 H 1.48503 * 109.47054 * 215.31324 * 13 11 9 16 16 H 1.48504 * 109.47418 * 335.31367 * 13 11 9 17 17 C 1.46504 * 119.99552 * 90.00673 * 8 7 6 18 18 C 1.54274 * 110.03063 * 241.62046 * 17 8 7 19 19 C 1.54964 * 104.15969 * 217.13741 * 18 17 8 20 20 C 1.54894 * 102.77704 * 37.88785 * 19 18 17 21 21 C 1.53874 * 110.03078 * 124.40364 * 17 8 7 22 22 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47264 * 300.00229 * 1 2 3 24 24 H 1.09003 * 109.47397 * 59.99664 * 1 2 3 25 25 H 1.08993 * 109.47217 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.46942 * 300.00550 * 4 3 2 27 27 H 1.09001 * 109.46901 * 60.00159 * 4 3 2 28 28 H 1.09001 * 109.47443 * 299.99627 * 5 3 2 29 29 H 1.09005 * 109.47469 * 60.00090 * 5 3 2 30 30 H 1.08999 * 109.46936 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46759 * 305.00483 * 6 3 2 32 32 H 1.08990 * 109.47040 * 184.99931 * 6 3 2 33 33 H 1.08996 * 109.46766 * 60.00611 * 7 6 3 34 34 H 1.08996 * 109.47351 * 300.00420 * 7 6 3 35 35 H 0.97005 * 120.00160 * 180.02562 * 12 11 9 36 36 H 1.09000 * 110.01661 * 3.00638 * 17 8 7 37 37 H 1.09001 * 110.48474 * 335.78333 * 18 17 8 38 38 H 1.09001 * 110.48765 * 98.42406 * 18 17 8 39 39 H 1.08997 * 110.71954 * 279.57353 * 19 18 17 40 40 H 1.08999 * 110.92002 * 156.29704 * 19 18 17 41 41 H 1.08992 * 110.48383 * 203.40639 * 20 19 18 42 42 H 1.08998 * 110.59767 * 80.81710 * 20 19 18 43 43 H 1.08992 * 110.03093 * 238.56256 * 21 17 8 44 44 H 1.08991 * 110.03672 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1847 -0.0006 7 6 3.9952 0.5368 -1.3083 8 7 5.4557 0.4217 -1.3092 9 6 6.2224 1.4394 -1.8107 10 1 7.1463 1.7109 -1.3217 11 6 5.8123 2.1220 -2.9477 12 7 6.2520 3.3410 -3.1779 13 14 4.6363 1.3105 -4.1510 14 1 3.2449 1.7252 -3.8394 15 1 4.9787 1.7267 -5.5347 16 1 4.7504 -0.1657 -4.0355 17 6 6.0958 -0.7823 -0.7734 18 6 6.9889 -0.4151 0.4297 19 6 8.2155 -1.3519 0.2912 20 6 8.4436 -1.3935 -1.2403 21 6 7.0201 -1.4044 -1.8347 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.0025 3.0603 1.2495 26 1 0.4722 2.1507 1.2492 27 1 1.8804 1.5238 2.1392 28 1 1.8804 1.5239 -2.1392 29 1 0.4721 2.1508 -1.2492 30 1 2.0025 3.0603 -1.2494 31 1 3.8514 0.5681 0.8409 32 1 3.9785 2.1764 0.0889 33 1 3.6792 1.1533 -2.1498 34 1 3.5521 -0.4550 -1.3979 35 1 5.9651 3.8182 -3.9722 36 1 5.3377 -1.5039 -0.4691 37 1 7.2977 0.6286 0.3710 38 1 6.4652 -0.6068 1.3662 39 1 7.9866 -2.3462 0.6747 40 1 9.0840 -0.9338 0.8000 41 1 8.9814 -2.2988 -1.5214 42 1 8.9883 -0.5091 -1.5710 43 1 6.7112 -2.4283 -2.0448 44 1 6.9921 -0.8109 -2.7484 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230415633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:02 Heat of formation + Delta-G solvation = -39.553988 kcal Electronic energy + Delta-G solvation = -20838.379956 eV Core-core repulsion = 17984.020321 eV Total energy + Delta-G solvation = -2854.359634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.92202 -37.72466 -34.78371 -32.89710 -31.33798 -28.72285 -27.85173 -27.24272 -26.83680 -26.24853 -23.60033 -21.63626 -19.99602 -19.37595 -18.83451 -16.41254 -16.04252 -15.52085 -15.23027 -14.94284 -14.87386 -14.20051 -13.57749 -13.34578 -13.19156 -12.73009 -12.47592 -12.35529 -12.19569 -11.85580 -11.71641 -11.54507 -11.35229 -11.04916 -10.78123 -10.64382 -10.45149 -10.39320 -10.38016 -10.27574 -10.01636 -9.86644 -9.68712 -9.51623 -9.30137 -9.26979 -8.40354 -6.64219 -5.93977 -3.33365 3.34214 3.50816 3.58762 4.08282 4.58621 4.92383 5.15993 5.20955 5.32105 5.40522 5.44153 5.46498 5.51471 5.53937 5.70626 5.71941 5.78111 5.87641 6.04053 6.10396 6.14676 6.21752 6.27370 6.30206 6.35477 6.39160 6.46583 6.53281 6.55263 6.62132 6.62553 6.67318 6.82243 6.93011 7.02346 7.10612 7.21480 7.27711 7.56283 8.15901 8.50223 9.12370 9.81395 10.25721 11.21823 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.008691 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.645446 B = 3221.003832 C = 4123.661732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.111 3.889 4 C -0.174 4.174 5 C -0.181 4.181 6 C -0.116 4.116 7 C 0.140 3.860 8 N -0.602 5.602 9 C -0.254 4.254 10 H 0.078 0.922 11 C 0.038 3.962 12 N -0.901 5.901 13 Si 0.867 3.133 14 H -0.284 1.284 15 H -0.305 1.305 16 H -0.268 1.268 17 C 0.172 3.828 18 C -0.134 4.134 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.134 4.134 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 -6.245 6.756 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.238 4.238 6 C -0.156 4.156 7 C 0.015 3.985 8 N -0.323 5.323 9 C -0.383 4.383 10 H 0.096 0.904 11 C -0.162 4.162 12 N -0.543 5.543 13 Si 0.697 3.303 14 H -0.212 1.212 15 H -0.233 1.233 16 H -0.193 1.193 17 C 0.065 3.935 18 C -0.173 4.173 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.173 4.173 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.062 -6.266 6.623 11.532 hybrid contribution -0.960 -0.041 -0.805 1.253 sum -8.021 -6.307 5.818 11.746 Atomic orbital electron populations 1.22713 0.82767 1.01905 0.99769 1.88000 1.18480 1.28179 1.94951 1.21657 0.95250 0.82462 0.93527 1.22393 1.00860 1.01251 0.98602 1.22515 1.00385 1.01769 0.99135 1.22143 0.89373 1.02903 1.01136 1.21222 0.84368 0.97867 0.95061 1.44335 1.00533 1.16085 1.71318 1.18633 1.06433 1.07461 1.05744 0.90403 1.25482 0.97659 0.95967 0.97126 1.69883 1.46769 1.09831 1.27773 0.87090 0.80693 0.81341 0.81151 1.21226 1.23313 1.19311 1.21043 0.92998 0.87822 0.91598 1.22829 0.95824 1.00511 0.98126 1.22433 0.98202 0.98956 0.96456 1.22239 0.97565 1.00454 0.95190 1.22548 0.94573 0.98978 1.01188 0.90359 0.94285 0.94151 0.91423 0.92900 0.92068 0.91218 0.93148 0.91182 0.92181 0.90063 0.92647 0.94016 0.92933 0.93071 0.90401 0.93446 0.92747 0.92783 0.93388 0.91654 0.93914 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.21 101.05 1.03 1.35 16 2 O -0.38 -6.26 9.88 -35.23 -0.35 -6.60 16 3 C 0.11 1.83 0.82 -90.62 -0.07 1.76 16 4 C -0.17 -2.39 8.25 37.16 0.31 -2.09 16 5 C -0.18 -3.03 7.76 37.16 0.29 -2.74 16 6 C -0.12 -2.23 4.83 -26.73 -0.13 -2.36 16 7 C 0.14 3.08 3.91 -4.04 -0.02 3.06 16 8 N -0.60 -14.03 2.00 -164.38 -0.33 -14.36 16 9 C -0.25 -6.83 8.24 -15.06 -0.12 -6.95 16 10 H 0.08 2.28 7.02 -52.49 -0.37 1.91 16 11 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16 12 N -0.90 -27.01 13.97 55.49 0.78 -26.24 16 13 Si 0.87 22.13 25.19 -169.99 -4.28 17.84 16 14 H -0.28 -6.98 5.99 56.52 0.34 -6.64 16 15 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 16 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.17 3.51 3.42 -66.81 -0.23 3.28 16 18 C -0.13 -2.48 6.42 -25.03 -0.16 -2.64 16 19 C -0.12 -1.97 6.91 -24.69 -0.17 -2.14 16 20 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 21 C -0.13 -2.63 6.25 -25.61 -0.16 -2.79 16 22 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.43 6.42 -51.93 -0.33 0.10 16 24 H 0.04 0.49 6.42 -51.93 -0.33 0.15 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.32 5.66 -51.93 -0.29 1.03 16 29 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.06 1.31 1.80 -51.93 -0.09 1.22 16 34 H 0.04 0.90 7.59 -51.93 -0.39 0.50 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.05 1.00 7.81 -51.93 -0.41 0.59 16 37 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.80 7.20 -51.93 -0.37 1.43 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -29.04 325.98 -6.86 -35.91 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.89 Total: 2.01 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 0.30 Total: -13.47 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.45 Total: -40.59 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.35 Total: -6.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.28 Total: 17.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.04 -6.86 -35.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230415633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.649 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds