Wall clock time and date at job start Mon Mar 30 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47095 * 59.99879 * 3 2 1 5 5 C 1.52996 * 109.46947 * 300.00204 * 3 2 1 6 6 C 1.52999 * 109.47261 * 180.02562 * 3 2 1 7 7 C 1.53005 * 109.46920 * 64.99678 * 6 3 2 8 8 N 1.46502 * 109.46769 * 179.97438 * 7 6 3 9 9 C 1.36935 * 120.00179 * 270.00530 * 8 7 6 10 10 H 1.07998 * 119.99832 * 140.99567 * 9 8 7 11 11 C 1.38813 * 120.00089 * 320.98585 * 9 8 7 12 12 N 1.31612 * 119.99933 * 156.81684 * 11 9 8 13 13 Si 1.86802 * 119.99803 * 336.81933 * 11 9 8 14 14 H 1.48495 * 109.47292 * 95.31621 * 13 11 9 15 15 H 1.48503 * 109.47054 * 215.31324 * 13 11 9 16 16 H 1.48504 * 109.47418 * 335.31367 * 13 11 9 17 17 C 1.46504 * 119.99552 * 90.00673 * 8 7 6 18 18 C 1.54274 * 110.03063 * 241.62046 * 17 8 7 19 19 C 1.54964 * 104.15969 * 217.13741 * 18 17 8 20 20 C 1.54894 * 102.77704 * 37.88785 * 19 18 17 21 21 C 1.53874 * 110.03078 * 124.40364 * 17 8 7 22 22 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47264 * 300.00229 * 1 2 3 24 24 H 1.09003 * 109.47397 * 59.99664 * 1 2 3 25 25 H 1.08993 * 109.47217 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.46942 * 300.00550 * 4 3 2 27 27 H 1.09001 * 109.46901 * 60.00159 * 4 3 2 28 28 H 1.09001 * 109.47443 * 299.99627 * 5 3 2 29 29 H 1.09005 * 109.47469 * 60.00090 * 5 3 2 30 30 H 1.08999 * 109.46936 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46759 * 305.00483 * 6 3 2 32 32 H 1.08990 * 109.47040 * 184.99931 * 6 3 2 33 33 H 1.08996 * 109.46766 * 60.00611 * 7 6 3 34 34 H 1.08996 * 109.47351 * 300.00420 * 7 6 3 35 35 H 0.97005 * 120.00160 * 180.02562 * 12 11 9 36 36 H 1.09000 * 110.01661 * 3.00638 * 17 8 7 37 37 H 1.09001 * 110.48474 * 335.78333 * 18 17 8 38 38 H 1.09001 * 110.48765 * 98.42406 * 18 17 8 39 39 H 1.08997 * 110.71954 * 279.57353 * 19 18 17 40 40 H 1.08999 * 110.92002 * 156.29704 * 19 18 17 41 41 H 1.08992 * 110.48383 * 203.40639 * 20 19 18 42 42 H 1.08998 * 110.59767 * 80.81710 * 20 19 18 43 43 H 1.08992 * 110.03093 * 238.56256 * 21 17 8 44 44 H 1.08991 * 110.03672 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1847 -0.0006 7 6 3.9952 0.5368 -1.3083 8 7 5.4557 0.4217 -1.3092 9 6 6.2224 1.4394 -1.8107 10 1 7.1463 1.7109 -1.3217 11 6 5.8123 2.1220 -2.9477 12 7 6.2520 3.3410 -3.1779 13 14 4.6363 1.3105 -4.1510 14 1 3.2449 1.7252 -3.8394 15 1 4.9787 1.7267 -5.5347 16 1 4.7504 -0.1657 -4.0355 17 6 6.0958 -0.7823 -0.7734 18 6 6.9889 -0.4151 0.4297 19 6 8.2155 -1.3519 0.2912 20 6 8.4436 -1.3935 -1.2403 21 6 7.0201 -1.4044 -1.8347 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.0025 3.0603 1.2495 26 1 0.4722 2.1507 1.2492 27 1 1.8804 1.5238 2.1392 28 1 1.8804 1.5239 -2.1392 29 1 0.4721 2.1508 -1.2492 30 1 2.0025 3.0603 -1.2494 31 1 3.8514 0.5681 0.8409 32 1 3.9785 2.1764 0.0889 33 1 3.6792 1.1533 -2.1498 34 1 3.5521 -0.4550 -1.3979 35 1 5.9651 3.8182 -3.9722 36 1 5.3377 -1.5039 -0.4691 37 1 7.2977 0.6286 0.3710 38 1 6.4652 -0.6068 1.3662 39 1 7.9866 -2.3462 0.6747 40 1 9.0840 -0.9338 0.8000 41 1 8.9814 -2.2988 -1.5214 42 1 8.9883 -0.5091 -1.5710 43 1 6.7112 -2.4283 -2.0448 44 1 6.9921 -0.8109 -2.7484 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230415633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:02 Heat of formation + Delta-G solvation = -56.306728 kcal Electronic energy + Delta-G solvation = -20839.106409 eV Core-core repulsion = 17984.020321 eV Total energy + Delta-G solvation = -2855.086088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25919 -39.28137 -36.40940 -34.45734 -33.28232 -30.19282 -29.35348 -28.53938 -28.34342 -27.56988 -25.36866 -23.36448 -21.41446 -20.70973 -20.56498 -18.34648 -17.49083 -17.09530 -16.93504 -16.27777 -16.04139 -15.83473 -15.18634 -14.94035 -14.55764 -14.51687 -14.00534 -13.85802 -13.57656 -13.31917 -13.24833 -12.95043 -12.86019 -12.59751 -12.34900 -12.19428 -12.11258 -12.01063 -11.81118 -11.72430 -11.70033 -11.39489 -11.30272 -11.24079 -11.05053 -10.53282 -10.44694 -8.59117 -8.14554 -5.49211 1.27822 1.38972 1.50338 2.44840 2.90694 3.08527 3.36569 3.88297 3.92537 3.97299 4.02662 4.12935 4.27849 4.37924 4.50603 4.52178 4.61408 4.66972 4.68277 4.75065 4.76995 4.82810 4.86855 4.89991 4.93145 4.94422 4.97697 5.08201 5.12924 5.18577 5.21744 5.24341 5.31503 5.37979 5.44581 5.57750 5.62937 5.66732 6.04422 6.29925 6.38974 7.10763 7.74823 8.18704 9.05591 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.008691 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.645446 B = 3221.003832 C = 4123.661732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.398 6.398 3 C 0.114 3.886 4 C -0.168 4.168 5 C -0.179 4.179 6 C -0.106 4.106 7 C 0.139 3.861 8 N -0.611 5.611 9 C -0.227 4.227 10 H 0.045 0.955 11 C -0.013 4.013 12 N -0.947 5.947 13 Si 0.921 3.079 14 H -0.271 1.271 15 H -0.315 1.315 16 H -0.267 1.267 17 C 0.162 3.838 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.135 4.135 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 -8.388 8.207 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.318 6.318 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.237 4.237 6 C -0.146 4.146 7 C 0.014 3.986 8 N -0.333 5.333 9 C -0.357 4.357 10 H 0.062 0.938 11 C -0.209 4.209 12 N -0.592 5.592 13 Si 0.751 3.249 14 H -0.198 1.198 15 H -0.244 1.244 16 H -0.191 1.191 17 C 0.057 3.943 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.174 4.174 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.669 -8.445 8.097 14.562 hybrid contribution -0.466 0.558 -1.182 1.387 sum -9.135 -7.887 6.916 13.910 Atomic orbital electron populations 1.22963 0.80518 1.03534 1.00811 1.87949 1.20912 1.27778 1.95167 1.21494 0.93205 0.83169 0.94737 1.22321 1.02364 1.00702 0.97109 1.22491 1.02237 1.00755 0.98185 1.21929 0.91965 1.01153 0.99544 1.21231 0.83387 0.98061 0.95894 1.44461 1.01072 1.16483 1.71313 1.18423 1.05164 1.07432 1.04678 0.93770 1.25929 0.99950 0.96324 0.98682 1.69987 1.49468 1.11262 1.28489 0.86196 0.79781 0.80304 0.78623 1.19830 1.24391 1.19122 1.21318 0.93740 0.86947 0.92335 1.22724 0.96942 0.99151 0.98060 1.22404 0.97296 0.99758 0.95429 1.22216 0.96061 1.00778 0.96154 1.22526 0.96170 0.99424 0.99266 0.88602 0.92479 0.93759 0.91522 0.90546 0.91565 0.93784 0.90238 0.92219 0.91829 0.92381 0.94418 0.93324 0.93189 0.91462 0.93890 0.91720 0.89859 0.91521 0.90448 0.94099 0.91583 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.21 113.37 1.16 1.54 16 2 O -0.40 -12.20 9.88 -148.98 -1.47 -13.68 16 3 C 0.11 3.57 0.82 -10.79 -0.01 3.56 16 4 C -0.17 -4.19 8.25 71.98 0.59 -3.60 16 5 C -0.18 -5.78 7.76 71.98 0.56 -5.22 16 6 C -0.11 -4.05 4.83 30.60 0.15 -3.91 16 7 C 0.14 6.08 3.91 86.38 0.34 6.41 16 8 N -0.61 -28.79 2.00 -673.99 -1.35 -30.14 16 9 C -0.23 -12.66 8.24 84.03 0.69 -11.97 16 10 H 0.04 2.75 7.02 -2.91 -0.02 2.73 16 11 C -0.01 -0.75 5.28 84.86 0.45 -0.30 16 12 N -0.95 -59.18 13.97 21.65 0.30 -58.88 16 13 Si 0.92 47.09 25.19 68.60 1.73 48.82 16 14 H -0.27 -13.14 5.99 99.48 0.60 -12.55 16 15 H -0.31 -16.47 7.11 99.48 0.71 -15.77 16 16 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 17 C 0.16 6.45 3.42 45.72 0.16 6.60 16 18 C -0.13 -4.66 6.42 31.70 0.20 -4.45 16 19 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 20 C -0.11 -3.77 6.83 31.67 0.22 -3.56 16 21 C -0.13 -5.15 6.25 31.32 0.20 -4.96 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.03 6.42 -2.39 -0.02 1.02 16 24 H 0.04 0.92 6.42 -2.39 -0.02 0.91 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.55 6.54 -2.39 -0.02 1.54 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.63 5.66 -2.39 -0.01 1.62 16 29 H 0.08 2.04 6.54 -2.38 -0.02 2.03 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.04 1.80 1.80 -2.39 0.00 1.79 16 34 H 0.05 2.04 7.59 -2.39 -0.02 2.03 16 35 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 36 H 0.07 2.46 7.81 -2.39 -0.02 2.44 16 37 H 0.04 1.84 6.58 -2.39 -0.02 1.82 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.04 1.84 7.20 -2.39 -0.02 1.83 16 Total: -1.00 -64.92 325.98 4.96 -59.96 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.84 Total: 16.81 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.92 Total: -22.89 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -1.05 Total: -89.02 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.47 Total: -13.68 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.73 Total: 48.82 kcal Total: -64.92 4.96 -59.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230415633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.653 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds