Wall clock time and date at job start Mon Mar 30 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 C 1.53002 * 109.47065 * 120.00064 * 2 1 3 5 5 O 1.42899 * 109.47122 * 175.00070 * 4 2 1 6 6 C 1.42899 * 114.00344 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47622 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47096 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 6 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.09002 * 109.47017 * 300.00230 * 1 2 3 23 23 H 1.09004 * 109.46822 * 59.99695 * 1 2 3 24 24 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47374 * 240.00143 * 2 1 3 26 26 H 1.08994 * 109.47103 * 300.00184 * 3 2 1 27 27 H 1.09000 * 109.46672 * 60.00597 * 3 2 1 28 28 H 1.09000 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46840 * 55.00375 * 4 2 1 30 30 H 1.08997 * 109.47137 * 295.00060 * 4 2 1 31 31 H 1.09005 * 109.46905 * 59.99346 * 6 5 4 32 32 H 1.08997 * 109.46927 * 300.00251 * 6 5 4 33 33 H 1.08998 * 109.46841 * 59.99683 * 7 6 5 34 34 H 1.09001 * 109.46884 * 299.99777 * 7 6 5 35 35 H 1.08996 * 109.47149 * 60.00332 * 8 7 6 36 36 H 1.09001 * 109.47006 * 299.99622 * 8 7 6 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4641 -0.8238 1.1920 6 6 4.0450 -1.4856 2.3175 7 6 5.5648 -1.5383 2.1498 8 6 6.1865 -2.2475 3.3546 9 7 7.6458 -2.2985 3.1933 10 6 8.2781 -2.9747 4.3338 11 6 9.7997 -2.8906 4.1970 12 6 10.3882 -3.6265 3.0208 13 1 10.5873 -3.1002 2.0991 14 6 10.6776 -4.9707 3.1234 15 7 10.5250 -5.5904 4.2734 16 14 11.2863 -5.9118 1.6289 17 1 11.3722 -4.9921 0.4662 18 1 12.6300 -6.4765 1.9132 19 1 10.3412 -7.0146 1.3197 20 6 10.4765 -1.5870 4.6250 21 6 10.6235 -2.8445 5.4854 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6054 -1.7199 1.2951 30 1 1.7516 -0.1584 2.1370 31 1 3.6518 -2.5001 2.3851 32 1 3.7982 -0.9390 3.2276 33 1 5.9582 -0.5240 2.0819 34 1 5.8112 -2.0852 1.2398 35 1 5.7931 -3.2617 3.4220 36 1 5.9402 -1.7009 4.2649 37 1 7.8981 -2.7441 2.3239 38 1 7.9722 -4.0207 4.3512 39 1 7.9694 -2.4903 5.2602 40 1 10.7967 -6.5170 4.3648 41 1 11.3475 -1.2617 4.0560 42 1 9.8379 -0.7894 5.0046 43 1 10.0814 -2.8736 6.4306 44 1 11.5909 -3.3468 5.4826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232665047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:04 Heat of formation + Delta-G solvation = -50.981070 kcal Electronic energy + Delta-G solvation = -18660.024480 eV Core-core repulsion = 15805.169330 eV Total energy + Delta-G solvation = -2854.855150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.49927 -37.02754 -35.65142 -34.58919 -31.88598 -31.08808 -27.40338 -26.72349 -25.68682 -24.88023 -22.73198 -21.28495 -20.83181 -20.33040 -18.95532 -16.75492 -16.35776 -15.89876 -15.46935 -14.97967 -14.60447 -14.45399 -13.93671 -13.89133 -13.49594 -13.02835 -12.79538 -12.55095 -12.41352 -12.27690 -11.73250 -11.43601 -11.34999 -11.15671 -11.04155 -10.96068 -10.93103 -10.85074 -10.72121 -10.57687 -10.39224 -10.04557 -9.63542 -9.29260 -8.80546 -8.36729 -8.02082 -7.49257 -5.99148 -4.06413 3.28354 3.37321 3.41761 3.52024 4.41984 4.59274 4.64211 4.80580 5.01406 5.08218 5.21748 5.24404 5.28437 5.29159 5.37478 5.46252 5.49112 5.60036 5.62125 5.63874 5.69606 5.81243 5.83589 5.98016 6.03255 6.12839 6.20163 6.37729 6.43301 6.52113 6.61054 6.86888 6.89042 6.96652 7.17473 7.24466 7.54317 7.64944 7.91300 8.01207 8.28655 8.53690 8.97835 9.59356 11.08042 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003250 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.591672 B = 8613.785645 C = 9157.031936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.386 6.386 6 C 0.066 3.934 7 C -0.114 4.114 8 C 0.062 3.938 9 N -0.681 5.681 10 C 0.106 3.894 11 C 0.046 3.954 12 C -0.491 4.491 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.348 0.652 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.349 8.633 -4.612 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.306 6.306 6 C -0.011 4.011 7 C -0.152 4.152 8 C -0.068 4.068 9 N -0.312 5.312 10 C -0.023 4.023 11 C 0.045 3.955 12 C -0.529 4.529 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.715 3.285 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.238 4.238 21 C -0.194 4.194 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.181 9.127 -4.430 19.953 hybrid contribution -0.035 -1.749 -0.545 1.832 sum -17.216 7.378 -4.975 19.380 Atomic orbital electron populations 1.21790 0.94494 1.01910 1.02143 1.21104 0.95295 0.97047 0.98043 1.21787 1.02186 0.94983 1.01229 1.22544 0.81740 0.98949 0.97868 1.87870 1.19502 1.79204 1.44000 1.22477 0.94599 0.95752 0.88314 1.21466 0.91781 1.02758 0.99219 1.21778 0.90189 0.97681 0.97176 1.60413 1.04978 1.59068 1.06759 1.21444 0.95301 0.94925 0.90588 1.18751 0.88615 0.93759 0.94391 1.20530 1.41876 0.92942 0.97532 0.92116 1.25024 0.95215 0.97572 0.95683 1.70024 1.46825 1.11454 1.23506 0.86617 0.78339 0.80025 0.83544 1.19602 1.21125 1.21112 1.22868 1.03102 0.91756 1.06081 1.22500 1.02570 1.00111 0.94252 0.92554 0.92074 0.92570 0.90378 0.92904 0.92987 0.91632 0.93623 0.93545 0.93638 0.93483 0.90392 0.91314 0.96100 0.91865 0.83360 0.95172 0.94316 0.93220 0.90932 0.91782 0.92389 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.84 3.16 -90.62 -0.29 -1.12 16 3 C -0.14 -1.26 9.09 37.16 0.34 -0.92 16 4 C 0.07 0.65 5.32 37.16 0.20 0.85 16 5 O -0.39 -4.95 9.88 -35.23 -0.35 -5.30 16 6 C 0.07 0.80 5.94 37.16 0.22 1.03 16 7 C -0.11 -1.62 5.84 -26.73 -0.16 -1.77 16 8 C 0.06 0.99 5.68 -3.82 -0.02 0.97 16 9 N -0.68 -13.50 6.47 -113.78 -0.74 -14.24 16 10 C 0.11 2.40 5.54 -3.83 -0.02 2.38 16 11 C 0.05 1.13 1.65 -155.66 -0.26 0.87 16 12 C -0.49 -13.28 8.33 -34.43 -0.29 -13.57 16 13 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 14 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 15 N -0.88 -24.95 12.65 55.43 0.70 -24.25 16 16 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.20 -4.59 9.96 -26.70 -0.27 -4.86 16 21 C -0.16 -3.79 9.14 -26.70 -0.24 -4.04 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.35 7.18 8.30 -39.29 -0.33 6.86 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -28.24 359.17 -9.26 -37.50 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.73 Total: 3.93 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.54 Total: -19.06 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.04 Total: -38.49 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.35 Total: -5.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.24 -9.26 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232665047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.485 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds