Wall clock time and date at job start Mon Mar 30 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 C 1.53002 * 109.47065 * 120.00064 * 2 1 3 5 5 O 1.42899 * 109.47122 * 175.00070 * 4 2 1 6 6 C 1.42899 * 114.00344 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47622 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47096 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 6 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.09002 * 109.47017 * 300.00230 * 1 2 3 23 23 H 1.09004 * 109.46822 * 59.99695 * 1 2 3 24 24 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47374 * 240.00143 * 2 1 3 26 26 H 1.08994 * 109.47103 * 300.00184 * 3 2 1 27 27 H 1.09000 * 109.46672 * 60.00597 * 3 2 1 28 28 H 1.09000 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46840 * 55.00375 * 4 2 1 30 30 H 1.08997 * 109.47137 * 295.00060 * 4 2 1 31 31 H 1.09005 * 109.46905 * 59.99346 * 6 5 4 32 32 H 1.08997 * 109.46927 * 300.00251 * 6 5 4 33 33 H 1.08998 * 109.46841 * 59.99683 * 7 6 5 34 34 H 1.09001 * 109.46884 * 299.99777 * 7 6 5 35 35 H 1.08996 * 109.47149 * 60.00332 * 8 7 6 36 36 H 1.09001 * 109.47006 * 299.99622 * 8 7 6 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4641 -0.8238 1.1920 6 6 4.0450 -1.4856 2.3175 7 6 5.5648 -1.5383 2.1498 8 6 6.1865 -2.2475 3.3546 9 7 7.6458 -2.2985 3.1933 10 6 8.2781 -2.9747 4.3338 11 6 9.7997 -2.8906 4.1970 12 6 10.3882 -3.6265 3.0208 13 1 10.5873 -3.1002 2.0991 14 6 10.6776 -4.9707 3.1234 15 7 10.5250 -5.5904 4.2734 16 14 11.2863 -5.9118 1.6289 17 1 11.3722 -4.9921 0.4662 18 1 12.6300 -6.4765 1.9132 19 1 10.3412 -7.0146 1.3197 20 6 10.4765 -1.5870 4.6250 21 6 10.6235 -2.8445 5.4854 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6054 -1.7199 1.2951 30 1 1.7516 -0.1584 2.1370 31 1 3.6518 -2.5001 2.3851 32 1 3.7982 -0.9390 3.2276 33 1 5.9582 -0.5240 2.0819 34 1 5.8112 -2.0852 1.2398 35 1 5.7931 -3.2617 3.4220 36 1 5.9402 -1.7009 4.2649 37 1 7.8981 -2.7441 2.3239 38 1 7.9722 -4.0207 4.3512 39 1 7.9694 -2.4903 5.2602 40 1 10.7967 -6.5170 4.3648 41 1 11.3475 -1.2617 4.0560 42 1 9.8379 -0.7894 5.0046 43 1 10.0814 -2.8736 6.4306 44 1 11.5909 -3.3468 5.4826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232665047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:04 Heat of formation + Delta-G solvation = -66.647384 kcal Electronic energy + Delta-G solvation = -18660.703822 eV Core-core repulsion = 15805.169330 eV Total energy + Delta-G solvation = -2855.534492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.41251 -38.77721 -36.79341 -35.72645 -33.95471 -32.39682 -28.07094 -27.99633 -27.30211 -26.25262 -24.12054 -22.80795 -22.39198 -21.11913 -20.82904 -17.92263 -17.66384 -17.29816 -16.66236 -16.55310 -16.06298 -15.68940 -15.50398 -15.05214 -14.79271 -14.35729 -13.85315 -13.65768 -13.61408 -13.23419 -13.09057 -12.96077 -12.86916 -12.78513 -12.43487 -12.29024 -12.12817 -11.99923 -11.94216 -11.85972 -11.64023 -11.48408 -11.19635 -10.81201 -10.52715 -10.37139 -9.91943 -9.13805 -8.07381 -6.19880 1.39643 1.43366 1.54001 2.43475 2.61020 3.19623 3.38374 3.77810 3.92101 3.99315 4.02696 4.19225 4.28152 4.32155 4.38984 4.50737 4.53441 4.58159 4.63853 4.69582 4.70577 4.75249 4.79635 4.83534 4.99112 5.00350 5.01749 5.05502 5.09467 5.20308 5.23086 5.27980 5.32255 5.40980 5.44517 5.65941 5.72210 5.82250 6.28478 6.36600 6.49012 6.63018 6.89870 7.48456 8.99419 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003250 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.591672 B = 8613.785645 C = 9157.031936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.060 3.940 5 O -0.407 6.407 6 C 0.070 3.930 7 C -0.105 4.105 8 C 0.064 3.936 9 N -0.683 5.683 10 C 0.120 3.880 11 C 0.021 3.979 12 C -0.502 4.502 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.179 4.179 21 C -0.161 4.161 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.001 0.999 39 H 0.051 0.949 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.771 9.354 -5.038 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.016 4.016 5 O -0.327 6.327 6 C -0.007 4.007 7 C -0.143 4.143 8 C -0.065 4.065 9 N -0.313 5.313 10 C -0.009 4.009 11 C 0.020 3.980 12 C -0.540 4.540 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.774 3.226 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.217 4.217 21 C -0.199 4.199 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.616 9.866 -4.861 21.622 hybrid contribution 0.388 -1.925 -0.413 2.007 sum -18.227 7.940 -5.274 20.569 Atomic orbital electron populations 1.21760 0.92732 1.02494 1.02896 1.21140 0.96708 0.96657 0.97091 1.21771 1.00858 0.95328 1.02086 1.22748 0.80262 0.99759 0.98863 1.87841 1.21248 1.79335 1.44258 1.22387 0.93074 0.96481 0.88767 1.21320 0.93305 1.01780 0.97867 1.21827 0.87886 0.98187 0.98596 1.60405 1.07320 1.58110 1.05489 1.21186 0.94030 0.93619 0.92096 1.18933 0.90008 0.95069 0.93962 1.20743 1.41851 0.93430 0.97969 0.92985 1.25683 0.95594 0.98384 0.98044 1.70125 1.47800 1.11641 1.25169 0.85660 0.77687 0.78673 0.80561 1.19091 1.20995 1.20844 1.22843 1.02758 0.91422 1.04645 1.22405 1.01540 1.01126 0.94868 0.91892 0.91247 0.92094 0.91356 0.91815 0.92398 0.93635 0.92863 0.92620 0.92876 0.92200 0.91084 0.92163 0.95988 0.90713 0.84167 0.98061 0.93100 0.93285 0.91154 0.89616 0.91155 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 71.98 0.66 -0.93 16 2 C -0.10 -1.56 3.16 -10.79 -0.03 -1.59 16 3 C -0.14 -2.32 9.09 71.98 0.65 -1.66 16 4 C 0.06 1.09 5.32 71.98 0.38 1.48 16 5 O -0.41 -9.93 9.88 -148.98 -1.47 -11.41 16 6 C 0.07 1.60 5.94 71.98 0.43 2.02 16 7 C -0.10 -2.84 5.84 30.59 0.18 -2.67 16 8 C 0.06 1.99 5.68 86.30 0.49 2.47 16 9 N -0.68 -26.57 6.47 -513.89 -3.33 -29.90 16 10 C 0.12 5.36 5.54 86.30 0.48 5.84 16 11 C 0.02 1.04 1.65 -52.93 -0.09 0.95 16 12 C -0.50 -27.27 8.33 25.60 0.21 -27.05 16 13 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 14 C 0.02 1.25 5.43 84.65 0.46 1.71 16 15 N -0.91 -51.99 12.65 21.45 0.27 -51.72 16 16 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 C -0.18 -7.99 9.96 30.62 0.30 -7.69 16 21 C -0.16 -7.79 9.14 30.62 0.28 -7.51 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.91 7.82 -2.39 -0.02 0.89 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.34 14.04 8.30 -89.69 -0.74 13.29 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.05 2.12 8.08 -2.38 -0.02 2.10 16 40 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.06 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -59.19 359.17 2.09 -57.11 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.17 Total: 25.15 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.41 Total: -34.64 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -3.05 Total: -81.62 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.47 Total: -11.41 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -59.19 2.09 -57.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232665047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.540 kcal (2) G-P(sol) polarization free energy of solvation -59.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds