Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00320 * 2 1 4 4 C 1.52994 * 109.47059 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46587 * 60.00450 * 5 4 3 7 7 C 1.52988 * 109.47340 * 300.00277 * 5 4 3 8 8 C 1.53003 * 109.46899 * 179.97438 * 5 4 3 9 9 N 1.46899 * 109.46790 * 185.49158 * 8 5 4 10 10 C 1.46899 * 111.00031 * 184.26431 * 9 8 5 11 11 C 1.53002 * 109.47233 * 185.37913 * 10 9 8 12 12 C 1.50703 * 115.54943 * 294.78694 * 11 10 9 13 13 H 1.07997 * 119.99655 * 95.09408 * 12 11 10 14 14 C 1.37881 * 120.00028 * 274.82659 * 12 11 10 15 15 N 1.31508 * 120.00158 * 355.42242 * 14 12 11 16 16 Si 1.86795 * 119.99768 * 175.42124 * 14 12 11 17 17 H 1.48498 * 109.47380 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47098 * 119.99857 * 16 14 12 19 19 H 1.48499 * 109.47348 * 239.99629 * 16 14 12 20 20 C 1.52996 * 117.50182 * 80.46218 * 11 10 9 21 21 C 1.53000 * 117.50060 * 149.12158 * 11 10 9 22 22 H 1.09002 * 109.47247 * 59.99330 * 1 2 3 23 23 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47075 * 300.00110 * 1 2 3 25 25 H 1.09000 * 109.47015 * 59.99843 * 3 2 1 26 26 H 1.09004 * 109.47229 * 300.00361 * 3 2 1 27 27 H 1.08997 * 109.47006 * 60.00215 * 4 3 2 28 28 H 1.08998 * 109.47631 * 299.99917 * 4 3 2 29 29 H 1.09008 * 109.47064 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47256 * 299.99225 * 6 5 4 31 31 H 1.08991 * 109.47643 * 59.99981 * 6 5 4 32 32 H 1.09005 * 109.47296 * 304.95596 * 7 5 4 33 33 H 1.09002 * 109.47613 * 64.95566 * 7 5 4 34 34 H 1.09002 * 109.47373 * 184.96147 * 7 5 4 35 35 H 1.08992 * 109.46945 * 65.49359 * 8 5 4 36 36 H 1.09000 * 109.47311 * 305.48974 * 8 5 4 37 37 H 1.00902 * 110.99917 * 308.21298 * 9 8 5 38 38 H 1.09000 * 109.47478 * 65.37596 * 10 9 8 39 39 H 1.09003 * 109.46694 * 305.37552 * 10 9 8 40 40 H 0.96997 * 120.00560 * 185.00360 * 15 14 12 41 41 H 1.08996 * 117.49871 * 215.00473 * 20 11 10 42 42 H 1.08999 * 117.49499 * 0.02562 * 20 11 10 43 43 H 1.09005 * 117.49634 * 359.97328 * 21 11 10 44 44 H 1.08991 * 117.49936 * 144.96843 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 3.7070 3.3417 1.2480 7 6 3.7059 3.3412 -1.2504 8 6 5.6831 2.4613 -0.0013 9 7 6.2801 3.7970 0.1306 10 6 7.7444 3.7311 0.0330 11 6 8.3367 5.1148 0.3078 12 6 7.9955 6.1801 -0.7021 13 1 7.1609 6.8428 -0.5267 14 6 8.7521 6.3122 -1.8471 15 7 9.8242 5.5697 -2.0162 16 14 8.2541 7.5459 -3.1584 17 1 7.0199 8.2522 -2.7304 18 1 9.3471 8.5327 -3.3503 19 1 7.9998 6.8342 -4.4366 20 6 8.4771 5.5457 1.7691 21 6 9.7206 5.1746 0.9574 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8567 0.6437 -0.8909 28 1 3.8575 0.6434 0.8891 29 1 4.1500 4.3377 1.2474 30 1 2.6204 3.4279 1.2485 31 1 4.0290 2.8010 2.1379 32 1 3.9492 2.7574 -2.1382 33 1 2.6291 3.5044 -1.2067 34 1 4.2175 4.3026 -1.2964 35 1 6.0115 2.0072 -0.9361 36 1 5.9982 1.8382 0.8357 37 1 5.9003 4.4322 -0.5552 38 1 8.0276 3.4070 -0.9684 39 1 8.1258 3.0205 0.7663 40 1 10.3967 5.7125 -2.7860 41 1 8.3226 6.5996 2.0001 42 1 8.1479 4.8431 2.5347 43 1 10.2090 4.2281 1.1894 44 1 10.3844 5.9841 0.6541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234621523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -41.610710 kcal Electronic energy + Delta-G solvation = -19644.519549 eV Core-core repulsion = 16790.070729 eV Total energy + Delta-G solvation = -2854.448820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.83160 -37.43452 -36.41021 -33.17602 -31.85651 -29.43887 -27.07520 -26.57550 -26.41336 -25.33360 -23.87845 -21.88066 -20.84239 -19.12892 -18.30657 -16.70973 -16.13208 -15.86019 -15.28616 -14.93163 -14.61288 -14.35506 -14.06440 -13.78744 -13.40314 -13.06821 -12.77603 -12.51394 -12.00865 -11.82712 -11.64282 -11.42321 -11.29970 -11.23373 -11.15831 -10.95311 -10.84663 -10.54083 -10.42037 -10.35480 -10.16929 -10.03406 -9.71258 -9.25951 -8.80025 -8.36151 -8.00520 -7.42837 -5.99090 -4.06401 3.27313 3.36494 3.39983 3.62128 4.41244 4.79805 4.89042 5.00230 5.09051 5.11131 5.19992 5.27200 5.28978 5.41014 5.42551 5.48971 5.65375 5.71638 5.87643 5.94242 5.99566 6.06833 6.07890 6.23813 6.24784 6.27109 6.39183 6.53382 6.56921 6.65072 6.73828 6.89049 6.92169 6.97487 7.04107 7.25428 7.56065 7.65991 7.90997 8.05048 8.33451 8.53919 8.97624 9.59250 11.08040 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.004496 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.240903 B = 6226.060573 C = 6828.261491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.059 3.941 4 C -0.106 4.106 5 C -0.059 4.059 6 C -0.133 4.133 7 C -0.149 4.149 8 C 0.069 3.931 9 N -0.677 5.677 10 C 0.106 3.894 11 C 0.048 3.952 12 C -0.491 4.491 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.880 5.880 16 Si 0.885 3.115 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.201 4.201 21 C -0.157 4.157 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.346 0.654 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 -7.854 3.159 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.018 4.018 4 C -0.144 4.144 5 C -0.059 4.059 6 C -0.190 4.190 7 C -0.206 4.206 8 C -0.061 4.061 9 N -0.310 5.310 10 C -0.023 4.023 11 C 0.047 3.953 12 C -0.529 4.529 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.517 5.517 16 Si 0.713 3.287 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.238 4.238 21 C -0.195 4.195 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.041 -8.108 3.673 16.624 hybrid contribution -0.148 0.686 -1.768 1.903 sum -14.189 -7.422 1.904 16.126 Atomic orbital electron populations 1.22704 0.81424 1.02459 0.99861 1.87861 1.19390 1.28791 1.95429 1.22738 0.94556 0.84064 1.00399 1.21536 0.92583 0.97247 1.03036 1.20507 0.95337 0.93764 0.96337 1.21793 0.99096 1.01903 0.96205 1.21989 1.00733 1.01024 0.96873 1.21911 0.92167 0.92741 0.99270 1.60512 1.06426 1.07534 1.56495 1.21435 0.85812 0.97099 0.97961 1.18740 0.94446 0.92682 0.89443 1.20510 1.14558 1.15434 1.02357 0.92214 1.25007 0.95085 0.95499 0.97813 1.70015 1.13645 1.38827 1.29193 0.86647 0.78727 0.81308 0.82000 1.19661 1.21131 1.21125 1.22858 1.04985 0.99444 0.96514 1.22493 0.91895 1.00248 1.04859 0.94237 0.89878 0.94218 0.92936 0.93128 0.91393 0.91187 0.90642 0.93993 0.93025 0.92914 0.92911 0.91513 0.96083 0.91885 0.83434 0.95302 0.94402 0.93228 0.91030 0.91807 0.92424 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.75 10.70 -35.23 -0.38 -5.13 16 3 C 0.06 0.65 5.23 37.15 0.19 0.85 16 4 C -0.11 -1.28 4.64 -26.73 -0.12 -1.40 16 5 C -0.06 -0.78 0.62 -154.51 -0.10 -0.87 16 6 C -0.13 -1.72 7.90 37.16 0.29 -1.43 16 7 C -0.15 -1.93 7.86 37.15 0.29 -1.63 16 8 C 0.07 1.10 4.66 -3.82 -0.02 1.08 16 9 N -0.68 -12.89 5.50 -113.78 -0.63 -13.52 16 10 C 0.11 2.36 5.54 -3.82 -0.02 2.34 16 11 C 0.05 1.16 1.65 -155.66 -0.26 0.91 16 12 C -0.49 -13.07 8.33 -34.44 -0.29 -13.36 16 13 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 15 N -0.88 -24.76 12.64 55.43 0.70 -24.06 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 C -0.20 -4.53 9.96 -26.70 -0.27 -4.80 16 21 C -0.16 -3.78 9.13 -26.70 -0.24 -4.03 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 26 H 0.05 0.54 6.54 -51.93 -0.34 0.20 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.12 7.46 -51.92 -0.39 0.73 16 30 H 0.04 0.47 6.43 -51.93 -0.33 0.14 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.59 6.71 -51.93 -0.35 0.24 16 34 H 0.07 0.96 6.41 -51.93 -0.33 0.63 16 35 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.35 6.87 6.37 -39.29 -0.25 6.62 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -27.91 346.21 -7.83 -35.74 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.21 Total: 5.17 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 0.48 Total: -19.21 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.08 Total: -37.58 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.91 -7.83 -35.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234621523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds