Wall clock time and date at job start Mon Mar 30 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00320 * 2 1 4 4 C 1.52994 * 109.47059 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46587 * 60.00450 * 5 4 3 7 7 C 1.52988 * 109.47340 * 300.00277 * 5 4 3 8 8 C 1.53003 * 109.46899 * 179.97438 * 5 4 3 9 9 N 1.46899 * 109.46790 * 185.49158 * 8 5 4 10 10 C 1.46899 * 111.00031 * 184.26431 * 9 8 5 11 11 C 1.53002 * 109.47233 * 185.37913 * 10 9 8 12 12 C 1.50703 * 115.54943 * 294.78694 * 11 10 9 13 13 H 1.07997 * 119.99655 * 95.09408 * 12 11 10 14 14 C 1.37881 * 120.00028 * 274.82659 * 12 11 10 15 15 N 1.31508 * 120.00158 * 355.42242 * 14 12 11 16 16 Si 1.86795 * 119.99768 * 175.42124 * 14 12 11 17 17 H 1.48498 * 109.47380 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47098 * 119.99857 * 16 14 12 19 19 H 1.48499 * 109.47348 * 239.99629 * 16 14 12 20 20 C 1.52996 * 117.50182 * 80.46218 * 11 10 9 21 21 C 1.53000 * 117.50060 * 149.12158 * 11 10 9 22 22 H 1.09002 * 109.47247 * 59.99330 * 1 2 3 23 23 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47075 * 300.00110 * 1 2 3 25 25 H 1.09000 * 109.47015 * 59.99843 * 3 2 1 26 26 H 1.09004 * 109.47229 * 300.00361 * 3 2 1 27 27 H 1.08997 * 109.47006 * 60.00215 * 4 3 2 28 28 H 1.08998 * 109.47631 * 299.99917 * 4 3 2 29 29 H 1.09008 * 109.47064 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47256 * 299.99225 * 6 5 4 31 31 H 1.08991 * 109.47643 * 59.99981 * 6 5 4 32 32 H 1.09005 * 109.47296 * 304.95596 * 7 5 4 33 33 H 1.09002 * 109.47613 * 64.95566 * 7 5 4 34 34 H 1.09002 * 109.47373 * 184.96147 * 7 5 4 35 35 H 1.08992 * 109.46945 * 65.49359 * 8 5 4 36 36 H 1.09000 * 109.47311 * 305.48974 * 8 5 4 37 37 H 1.00902 * 110.99917 * 308.21298 * 9 8 5 38 38 H 1.09000 * 109.47478 * 65.37596 * 10 9 8 39 39 H 1.09003 * 109.46694 * 305.37552 * 10 9 8 40 40 H 0.96997 * 120.00560 * 185.00360 * 15 14 12 41 41 H 1.08996 * 117.49871 * 215.00473 * 20 11 10 42 42 H 1.08999 * 117.49499 * 0.02562 * 20 11 10 43 43 H 1.09005 * 117.49634 * 359.97328 * 21 11 10 44 44 H 1.08991 * 117.49936 * 144.96843 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 3.7070 3.3417 1.2480 7 6 3.7059 3.3412 -1.2504 8 6 5.6831 2.4613 -0.0013 9 7 6.2801 3.7970 0.1306 10 6 7.7444 3.7311 0.0330 11 6 8.3367 5.1148 0.3078 12 6 7.9955 6.1801 -0.7021 13 1 7.1609 6.8428 -0.5267 14 6 8.7521 6.3122 -1.8471 15 7 9.8242 5.5697 -2.0162 16 14 8.2541 7.5459 -3.1584 17 1 7.0199 8.2522 -2.7304 18 1 9.3471 8.5327 -3.3503 19 1 7.9998 6.8342 -4.4366 20 6 8.4771 5.5457 1.7691 21 6 9.7206 5.1746 0.9574 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8567 0.6437 -0.8909 28 1 3.8575 0.6434 0.8891 29 1 4.1500 4.3377 1.2474 30 1 2.6204 3.4279 1.2485 31 1 4.0290 2.8010 2.1379 32 1 3.9492 2.7574 -2.1382 33 1 2.6291 3.5044 -1.2067 34 1 4.2175 4.3026 -1.2964 35 1 6.0115 2.0072 -0.9361 36 1 5.9982 1.8382 0.8357 37 1 5.9003 4.4322 -0.5552 38 1 8.0276 3.4070 -0.9684 39 1 8.1258 3.0205 0.7663 40 1 10.3967 5.7125 -2.7860 41 1 8.3226 6.5996 2.0001 42 1 8.1479 4.8431 2.5347 43 1 10.2090 4.2281 1.1894 44 1 10.3844 5.9841 0.6541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234621523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:07 Heat of formation + Delta-G solvation = -57.384301 kcal Electronic energy + Delta-G solvation = -19645.203544 eV Core-core repulsion = 16790.070729 eV Total energy + Delta-G solvation = -2855.132815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89982 -38.72269 -37.89194 -34.65943 -33.89954 -30.42381 -28.18159 -28.06798 -27.25755 -27.09702 -25.24603 -23.13437 -22.68783 -21.01176 -19.45472 -17.97949 -17.47054 -16.93946 -16.62994 -16.50421 -15.98472 -15.81440 -15.34035 -15.22290 -14.59134 -14.40947 -14.13319 -13.92325 -13.34323 -13.16651 -12.97881 -12.86201 -12.80114 -12.67583 -12.52157 -12.28245 -12.18522 -12.15545 -11.95577 -11.60992 -11.51337 -11.31803 -11.06618 -10.79081 -10.51332 -10.35117 -9.89592 -9.04962 -8.05881 -6.18332 1.39947 1.43753 1.53898 2.44109 2.80974 3.21408 3.40108 3.78681 3.85557 3.93584 4.11863 4.25208 4.36414 4.39891 4.53071 4.55620 4.57929 4.64184 4.66601 4.72527 4.80492 4.84222 4.86723 4.91499 4.98202 5.02859 5.06886 5.08782 5.10597 5.15919 5.24031 5.29569 5.33264 5.53427 5.66944 5.68617 5.73321 5.83948 6.27811 6.39650 6.50754 6.71073 6.92038 7.49967 9.00905 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.004496 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.240903 B = 6226.060573 C = 6828.261491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.050 4.050 6 C -0.128 4.128 7 C -0.148 4.148 8 C 0.069 3.931 9 N -0.671 5.671 10 C 0.119 3.881 11 C 0.026 3.974 12 C -0.499 4.499 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.946 3.054 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.177 4.177 21 C -0.164 4.164 22 H 0.048 0.952 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.013 0.987 36 H 0.067 0.933 37 H 0.340 0.660 38 H -0.003 1.003 39 H 0.046 0.954 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 -8.045 3.538 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.051 4.051 6 C -0.185 4.185 7 C -0.205 4.205 8 C -0.061 4.061 9 N -0.303 5.303 10 C -0.010 4.010 11 C 0.025 3.975 12 C -0.537 4.537 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.773 3.227 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.214 4.214 21 C -0.202 4.202 22 H 0.066 0.934 23 H 0.114 0.886 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.015 0.985 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.045 -8.300 4.064 18.516 hybrid contribution 0.442 0.712 -1.850 2.031 sum -15.603 -7.587 2.214 17.491 Atomic orbital electron populations 1.22909 0.79679 1.03695 1.00796 1.87820 1.21368 1.29167 1.95614 1.22693 0.93531 0.84124 1.01129 1.21435 0.93637 0.96045 1.02733 1.20405 0.93162 0.94771 0.96744 1.21742 1.00362 1.00555 0.95884 1.21978 1.01910 0.99945 0.96659 1.22002 0.94184 0.90956 0.98950 1.60497 1.04508 1.09149 1.56115 1.21174 0.87744 0.95842 0.96248 1.18899 0.94867 0.93416 0.90320 1.20730 1.14171 1.15751 1.03085 0.92837 1.25670 0.95063 0.97273 0.99649 1.70125 1.14599 1.40276 1.29778 0.85687 0.78471 0.79171 0.79417 1.18865 1.21131 1.20987 1.22826 1.02946 0.99852 0.95823 1.22396 0.91895 0.99962 1.05972 0.93357 0.88639 0.93182 0.92042 0.92463 0.91950 0.91306 0.92592 0.91867 0.93010 0.93069 0.90786 0.93250 0.96920 0.91506 0.84022 0.98517 0.93598 0.93378 0.91107 0.89706 0.91454 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.19 10.70 -148.98 -1.59 -10.78 16 3 C 0.06 1.21 5.23 71.98 0.38 1.59 16 4 C -0.10 -2.24 4.64 30.59 0.14 -2.10 16 5 C -0.05 -1.25 0.62 -52.18 -0.03 -1.28 16 6 C -0.13 -3.08 7.90 71.98 0.57 -2.51 16 7 C -0.15 -3.61 7.86 71.98 0.57 -3.05 16 8 C 0.07 2.14 4.66 86.30 0.40 2.54 16 9 N -0.67 -25.34 5.50 -513.89 -2.83 -28.16 16 10 C 0.12 5.34 5.54 86.30 0.48 5.82 16 11 C 0.03 1.26 1.65 -52.93 -0.09 1.17 16 12 C -0.50 -26.75 8.33 25.60 0.21 -26.53 16 13 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 14 C 0.02 1.26 5.43 84.66 0.46 1.72 16 15 N -0.91 -51.99 12.64 21.45 0.27 -51.72 16 16 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 C -0.18 -7.82 9.96 30.62 0.30 -7.51 16 21 C -0.16 -7.94 9.13 30.62 0.28 -7.66 16 22 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.06 1.10 6.43 -2.39 -0.02 1.08 16 26 H 0.06 1.05 6.54 -2.39 -0.02 1.03 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.57 7.46 -2.38 -0.02 1.56 16 30 H 0.06 1.24 6.43 -2.39 -0.02 1.23 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.48 6.71 -2.39 -0.02 1.47 16 34 H 0.05 1.38 6.41 -2.39 -0.02 1.37 16 35 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.34 13.55 6.37 -89.69 -0.57 12.98 16 38 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.05 1.94 8.08 -2.39 -0.02 1.93 16 40 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 41 H 0.07 3.11 8.14 -2.39 -0.02 3.10 16 42 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 44 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -58.88 346.21 3.17 -55.72 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.37 Total: 26.14 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 4.92 Total: -36.20 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.55 Total: -79.88 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.59 Total: -10.78 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -58.88 3.17 -55.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234621523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.665 kcal (2) G-P(sol) polarization free energy of solvation -58.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds