Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53007 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.48596 * 305.03107 * 4 3 2 6 6 C 1.53090 * 109.48034 * 185.00060 * 4 3 2 7 7 C 1.53181 * 109.16285 * 182.41229 * 6 4 3 8 8 H 1.08991 * 109.54466 * 176.84975 * 7 6 4 9 9 N 1.46905 * 109.61191 * 297.06891 * 7 6 4 10 10 C 1.46905 * 110.99672 * 206.25549 * 9 7 6 11 11 H 1.09001 * 109.46817 * 323.87852 * 10 9 7 12 12 C 1.50700 * 109.46929 * 83.87970 * 10 9 7 13 13 H 1.07990 * 120.00307 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99442 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00317 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99868 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47074 * 59.99660 * 16 14 12 18 18 H 1.48503 * 109.47181 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46979 * 299.99886 * 16 14 12 20 20 C 1.52997 * 109.46796 * 203.88010 * 10 9 7 21 21 C 1.52998 * 109.47237 * 63.95473 * 20 10 9 22 22 C 1.53174 * 109.03836 * 56.97683 * 7 6 4 23 23 C 1.53091 * 109.21699 * 302.99183 * 22 7 6 24 24 O 1.42907 * 109.47816 * 65.05596 * 4 3 2 25 25 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47171 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.46726 * 60.00435 * 1 2 3 28 28 H 1.08996 * 109.47171 * 239.99745 * 2 1 3 29 29 H 1.09004 * 109.46726 * 119.99565 * 2 1 3 30 30 H 1.08996 * 109.47410 * 59.99891 * 3 2 1 31 31 H 1.08994 * 109.47558 * 299.99610 * 3 2 1 32 32 H 1.09002 * 109.52455 * 62.50245 * 6 4 3 33 33 H 1.09001 * 109.52252 * 302.31325 * 6 4 3 34 34 H 1.00900 * 111.00185 * 330.20639 * 9 7 6 35 35 H 0.97001 * 119.99973 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46964 * 183.95464 * 20 10 9 37 37 H 1.09000 * 109.47484 * 303.95519 * 20 10 9 38 38 H 1.09000 * 109.47662 * 54.73564 * 21 20 10 39 39 H 1.09008 * 109.47228 * 174.73464 * 21 20 10 40 40 H 1.09005 * 109.47197 * 294.73146 * 21 20 10 41 41 H 1.09001 * 109.52322 * 62.92454 * 22 7 6 42 42 H 1.08992 * 109.52635 * 183.05354 * 22 7 6 43 43 H 1.09000 * 109.48208 * 177.61994 * 23 22 7 44 44 H 1.08998 * 109.48081 * 297.65972 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9333 0.8528 0.8423 6 6 4.0805 2.8803 0.1265 7 6 5.6111 2.8777 0.0657 8 1 5.9791 3.9030 0.0985 9 7 6.1485 2.1259 1.2077 10 6 7.4995 2.5882 1.5534 11 1 8.0380 2.8497 0.6425 12 6 7.4031 3.7990 2.4453 13 1 6.4353 4.1866 2.7269 14 6 8.5507 4.4125 2.9010 15 7 9.7294 3.9407 2.5577 16 14 8.4314 5.9130 4.0073 17 1 7.6984 5.5559 5.2483 18 1 9.7970 6.3811 4.3556 19 1 7.7040 6.9952 3.2968 20 6 8.2480 1.4731 2.2862 21 6 8.4322 0.2796 1.3467 22 6 6.0581 2.2142 -1.2405 23 6 5.4725 0.8017 -1.3144 24 8 4.0471 0.8742 -1.2207 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 3.7544 3.3008 1.0778 33 1 3.6845 3.4804 -0.6929 34 1 5.5310 2.1865 2.0034 35 1 10.5367 4.3726 2.8780 36 1 9.2242 1.8391 2.6044 37 1 7.6740 1.1629 3.1593 38 1 8.9241 0.6098 0.4318 39 1 9.0457 -0.4769 1.8363 40 1 7.4582 -0.1446 1.1028 41 1 5.7021 2.8008 -2.0874 42 1 7.1463 2.1592 -1.2673 43 1 5.7531 0.3409 -2.2615 44 1 5.8607 0.2037 -0.4899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251085947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = -81.240189 kcal Electronic energy + Delta-G solvation = -20380.373967 eV Core-core repulsion = 17524.206683 eV Total energy + Delta-G solvation = -2856.167284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29976 -36.14809 -34.76351 -33.32178 -31.55124 -30.89729 -29.47513 -26.87677 -25.80052 -23.56825 -22.83256 -22.15058 -20.83801 -19.53772 -18.75456 -16.61789 -16.12208 -15.64188 -14.88073 -14.69158 -14.52674 -14.21698 -13.85526 -13.28969 -13.02211 -12.82511 -12.65465 -12.47774 -12.05350 -11.84855 -11.55354 -11.37120 -11.17946 -11.09659 -11.05452 -10.87301 -10.71047 -10.68552 -10.54888 -10.29800 -9.94606 -9.88563 -9.60511 -9.39376 -9.17629 -8.84054 -8.38783 -7.25633 -6.01252 -4.14393 3.26005 3.31575 3.33747 4.17588 4.37543 4.82391 5.08380 5.14351 5.20401 5.28006 5.39257 5.46506 5.49980 5.61546 5.70903 5.76994 5.82507 5.90763 5.99278 6.04103 6.05231 6.17655 6.28525 6.34979 6.37817 6.41243 6.48024 6.54957 6.58408 6.63955 6.70093 6.78313 7.11965 7.15569 7.43224 7.58313 7.69733 7.75946 8.07109 8.15099 8.32234 8.64843 8.98379 9.53405 10.98618 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.005488 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.422967 B = 5101.098361 C = 5603.965078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.100 3.900 5 H 0.066 0.934 6 C -0.148 4.148 7 C 0.089 3.911 8 H 0.051 0.949 9 N -0.683 5.683 10 C 0.216 3.784 11 H 0.032 0.968 12 C -0.546 4.546 13 H 0.051 0.949 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.279 1.279 20 C -0.106 4.106 21 C -0.135 4.135 22 C -0.138 4.138 23 C 0.072 3.928 24 O -0.388 6.388 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.327 0.673 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -5.713 -5.345 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.042 3.958 5 H 0.084 0.916 6 C -0.187 4.187 7 C -0.022 4.022 8 H 0.069 0.931 9 N -0.313 5.313 10 C 0.108 3.892 11 H 0.050 0.950 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.205 1.205 20 C -0.145 4.145 21 C -0.192 4.192 22 C -0.177 4.177 23 C -0.004 4.004 24 O -0.307 6.307 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.296 -6.265 -5.860 14.184 hybrid contribution 0.138 2.028 1.299 2.412 sum -11.158 -4.237 -4.561 12.777 Atomic orbital electron populations 1.21787 0.96420 1.01229 1.01466 1.21469 0.95025 0.96953 1.02458 1.21658 0.93896 0.97250 1.02152 1.21967 0.92942 0.93246 0.87665 0.91610 1.22373 0.96877 0.97462 1.01942 1.21331 0.91928 0.96639 0.92282 0.93117 1.60968 1.05773 1.56572 1.07985 1.19166 0.84233 0.91001 0.94771 0.94961 1.21829 0.92397 1.12926 1.31327 0.93048 1.24923 0.95456 0.97042 0.96022 1.69867 0.97276 1.40201 1.44956 0.86733 0.77103 0.83374 0.81214 1.20316 1.21237 1.20461 1.21491 1.02593 0.93872 0.96498 1.21697 0.99546 0.98470 0.99509 1.22099 1.01369 0.97051 0.97139 1.22445 0.80226 0.96587 1.01186 1.87804 1.21723 1.82576 1.38637 0.93065 0.93021 0.92973 0.91326 0.92229 0.91090 0.91671 0.91499 0.91729 0.85675 0.92843 0.89260 0.95196 0.94488 0.95743 0.93544 0.92539 0.91056 0.90567 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.36 5.83 -26.73 -0.16 -1.52 16 3 C -0.11 -1.36 4.92 -26.73 -0.13 -1.49 16 4 C 0.10 1.44 2.49 -26.68 -0.07 1.38 16 5 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 6 C -0.15 -2.29 4.80 -26.59 -0.13 -2.41 16 7 C 0.09 1.62 2.64 -67.53 -0.18 1.44 16 8 H 0.05 1.07 7.58 -51.93 -0.39 0.67 16 9 N -0.68 -13.51 4.36 -100.76 -0.44 -13.95 16 10 C 0.22 5.15 1.80 -68.86 -0.12 5.03 16 11 H 0.03 0.86 7.23 -51.93 -0.38 0.49 16 12 C -0.55 -14.37 8.22 -34.44 -0.28 -14.65 16 13 H 0.05 1.35 7.76 -52.49 -0.41 0.94 16 14 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 15 N -0.88 -24.69 11.30 55.43 0.63 -24.07 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -2.48 5.44 -26.73 -0.15 -2.62 16 21 C -0.13 -2.70 9.73 37.16 0.36 -2.34 16 22 C -0.14 -2.32 5.73 -26.59 -0.15 -2.47 16 23 C 0.07 1.12 6.70 37.20 0.25 1.37 16 24 O -0.39 -6.10 9.95 -35.23 -0.35 -6.45 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.83 7.83 -51.93 -0.41 0.43 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.33 6.50 7.99 -39.29 -0.31 6.18 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.05 0.88 7.43 -51.93 -0.39 0.49 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.09 7.31 -51.93 -0.38 0.71 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -26.64 338.40 -8.96 -35.60 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.39 Total: 5.45 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.48 Total: -17.61 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.19 Total: -38.02 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.35 Total: -6.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.64 -8.96 -35.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251085947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.640 kcal (2) G-P(sol) polarization free energy of solvation -26.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds