Wall clock time and date at job start Mon Mar 30 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53007 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.48596 * 305.03107 * 4 3 2 6 6 C 1.53090 * 109.48034 * 185.00060 * 4 3 2 7 7 C 1.53181 * 109.16285 * 182.41229 * 6 4 3 8 8 H 1.08991 * 109.54466 * 176.84975 * 7 6 4 9 9 N 1.46905 * 109.61191 * 297.06891 * 7 6 4 10 10 C 1.46905 * 110.99672 * 206.25549 * 9 7 6 11 11 H 1.09001 * 109.46817 * 323.87852 * 10 9 7 12 12 C 1.50700 * 109.46929 * 83.87970 * 10 9 7 13 13 H 1.07990 * 120.00307 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99442 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00317 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99868 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47074 * 59.99660 * 16 14 12 18 18 H 1.48503 * 109.47181 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46979 * 299.99886 * 16 14 12 20 20 C 1.52997 * 109.46796 * 203.88010 * 10 9 7 21 21 C 1.52998 * 109.47237 * 63.95473 * 20 10 9 22 22 C 1.53174 * 109.03836 * 56.97683 * 7 6 4 23 23 C 1.53091 * 109.21699 * 302.99183 * 22 7 6 24 24 O 1.42907 * 109.47816 * 65.05596 * 4 3 2 25 25 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47171 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.46726 * 60.00435 * 1 2 3 28 28 H 1.08996 * 109.47171 * 239.99745 * 2 1 3 29 29 H 1.09004 * 109.46726 * 119.99565 * 2 1 3 30 30 H 1.08996 * 109.47410 * 59.99891 * 3 2 1 31 31 H 1.08994 * 109.47558 * 299.99610 * 3 2 1 32 32 H 1.09002 * 109.52455 * 62.50245 * 6 4 3 33 33 H 1.09001 * 109.52252 * 302.31325 * 6 4 3 34 34 H 1.00900 * 111.00185 * 330.20639 * 9 7 6 35 35 H 0.97001 * 119.99973 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46964 * 183.95464 * 20 10 9 37 37 H 1.09000 * 109.47484 * 303.95519 * 20 10 9 38 38 H 1.09000 * 109.47662 * 54.73564 * 21 20 10 39 39 H 1.09008 * 109.47228 * 174.73464 * 21 20 10 40 40 H 1.09005 * 109.47197 * 294.73146 * 21 20 10 41 41 H 1.09001 * 109.52322 * 62.92454 * 22 7 6 42 42 H 1.08992 * 109.52635 * 183.05354 * 22 7 6 43 43 H 1.09000 * 109.48208 * 177.61994 * 23 22 7 44 44 H 1.08998 * 109.48081 * 297.65972 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9333 0.8528 0.8423 6 6 4.0805 2.8803 0.1265 7 6 5.6111 2.8777 0.0657 8 1 5.9791 3.9030 0.0985 9 7 6.1485 2.1259 1.2077 10 6 7.4995 2.5882 1.5534 11 1 8.0380 2.8497 0.6425 12 6 7.4031 3.7990 2.4453 13 1 6.4353 4.1866 2.7269 14 6 8.5507 4.4125 2.9010 15 7 9.7294 3.9407 2.5577 16 14 8.4314 5.9130 4.0073 17 1 7.6984 5.5559 5.2483 18 1 9.7970 6.3811 4.3556 19 1 7.7040 6.9952 3.2968 20 6 8.2480 1.4731 2.2862 21 6 8.4322 0.2796 1.3467 22 6 6.0581 2.2142 -1.2405 23 6 5.4725 0.8017 -1.3144 24 8 4.0471 0.8742 -1.2207 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 3.7544 3.3008 1.0778 33 1 3.6845 3.4804 -0.6929 34 1 5.5310 2.1865 2.0034 35 1 10.5367 4.3726 2.8780 36 1 9.2242 1.8391 2.6044 37 1 7.6740 1.1629 3.1593 38 1 8.9241 0.6098 0.4318 39 1 9.0457 -0.4769 1.8363 40 1 7.4582 -0.1446 1.1028 41 1 5.7021 2.8008 -2.0874 42 1 7.1463 2.1592 -1.2673 43 1 5.7531 0.3409 -2.2615 44 1 5.8607 0.2037 -0.4899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251085947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:30 Heat of formation + Delta-G solvation = -95.414926 kcal Electronic energy + Delta-G solvation = -20380.988630 eV Core-core repulsion = 17524.206683 eV Total energy + Delta-G solvation = -2856.781946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62100 -37.79844 -35.78943 -34.99214 -33.44394 -32.03155 -31.08053 -28.24367 -27.43900 -24.92194 -24.60330 -23.31923 -21.84454 -21.35705 -20.20948 -18.64152 -17.27768 -16.94181 -16.76055 -16.19856 -15.69518 -15.53447 -15.30031 -14.73092 -14.49681 -14.43756 -13.85782 -13.67247 -13.33342 -13.31076 -13.03189 -13.00181 -12.88061 -12.59687 -12.54687 -12.31504 -12.15800 -12.05673 -11.76436 -11.53372 -11.50365 -11.39173 -11.32291 -11.08986 -10.82193 -10.45121 -10.23827 -9.01126 -8.05250 -6.27516 1.37700 1.38457 1.45640 2.39158 2.99504 3.14279 3.62303 3.79322 4.00396 4.12373 4.22803 4.28286 4.37367 4.48410 4.51211 4.61467 4.67764 4.75492 4.77907 4.87087 4.88417 4.92698 4.98938 5.05183 5.09172 5.15473 5.19160 5.21284 5.21556 5.34246 5.38029 5.44870 5.47976 5.53203 5.56621 5.64549 5.79409 6.12908 6.21793 6.39679 6.46671 6.83384 7.02807 7.44112 8.90537 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.005488 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.422967 B = 5101.098361 C = 5603.965078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.101 3.899 5 H 0.056 0.944 6 C -0.141 4.141 7 C 0.086 3.914 8 H 0.017 0.983 9 N -0.667 5.667 10 C 0.226 3.774 11 H -0.001 1.001 12 C -0.559 4.559 13 H 0.048 0.952 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.948 3.052 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.277 1.277 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.134 4.134 23 C 0.078 3.922 24 O -0.390 6.390 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.328 0.672 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.030 0.970 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 -6.103 -5.394 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.145 4.145 4 C 0.044 3.956 5 H 0.074 0.926 6 C -0.179 4.179 7 C -0.024 4.024 8 H 0.035 0.965 9 N -0.297 5.297 10 C 0.117 3.883 11 H 0.017 0.983 12 C -0.598 4.598 13 H 0.066 0.934 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.774 3.226 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.141 4.141 21 C -0.179 4.179 22 C -0.172 4.172 23 C 0.001 3.999 24 O -0.310 6.310 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.061 -6.662 -5.914 15.809 hybrid contribution 0.680 2.160 1.289 2.606 sum -12.380 -4.502 -4.625 13.962 Atomic orbital electron populations 1.21756 0.94871 1.01975 1.01976 1.21436 0.96371 0.96087 1.01820 1.21648 0.91774 0.98123 1.02908 1.22027 0.94624 0.92022 0.86975 0.92605 1.22316 0.94345 0.98595 1.02608 1.21376 0.94064 0.94683 0.92308 0.96484 1.60902 1.04167 1.56267 1.08355 1.18900 0.85929 0.90659 0.92792 0.98302 1.22158 0.92261 1.13883 1.31520 0.93362 1.25637 0.95241 0.99639 0.97395 1.70000 0.97732 1.41298 1.45922 0.85780 0.77067 0.80187 0.79579 1.19698 1.21002 1.20217 1.21345 1.00697 0.94947 0.97062 1.21545 1.00534 0.97378 0.98444 1.22051 1.00313 0.98245 0.96641 1.22406 0.80229 0.95302 1.01920 1.87820 1.21491 1.82565 1.39120 0.92270 0.92353 0.92619 0.92421 0.92442 0.89835 0.91368 0.91085 0.90745 0.85567 0.92963 0.92336 0.95451 0.95107 0.93975 0.92302 0.91340 0.92891 0.88407 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.43 5.83 30.59 0.18 -2.25 16 3 C -0.11 -2.34 4.92 30.60 0.15 -2.19 16 4 C 0.10 2.76 2.49 30.63 0.08 2.84 16 5 H 0.06 1.65 7.72 -2.39 -0.02 1.64 16 6 C -0.14 -4.16 4.80 30.69 0.15 -4.01 16 7 C 0.09 3.15 2.64 45.03 0.12 3.27 16 8 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 9 N -0.67 -26.54 4.36 -472.69 -2.06 -28.60 16 10 C 0.23 11.02 1.80 44.17 0.08 11.10 16 11 H 0.00 -0.05 7.23 -2.39 -0.02 -0.07 16 12 C -0.56 -29.93 8.22 25.60 0.21 -29.71 16 13 H 0.05 2.55 7.76 -2.92 -0.02 2.53 16 14 C 0.02 1.14 5.30 84.65 0.45 1.59 16 15 N -0.91 -51.89 11.30 21.45 0.24 -51.64 16 16 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 C -0.10 -4.82 5.44 30.59 0.17 -4.65 16 21 C -0.12 -4.81 9.73 71.98 0.70 -4.11 16 22 C -0.13 -4.46 5.73 30.68 0.18 -4.28 16 23 C 0.08 2.32 6.70 72.01 0.48 2.80 16 24 O -0.39 -11.54 9.95 -148.98 -1.48 -13.02 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.29 7.83 -2.39 -0.02 1.28 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.33 12.97 7.99 -89.69 -0.72 12.25 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.06 3.15 5.98 -2.39 -0.01 3.14 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.06 2.16 7.43 -2.38 -0.02 2.14 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.95 7.52 -2.39 -0.02 1.93 16 43 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.05 1.72 7.31 -2.39 -0.02 1.71 16 Total: -1.00 -57.02 338.40 2.59 -54.42 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.22 Total: 24.90 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.65 Total: -31.31 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.82 Total: -80.25 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.48 Total: -13.02 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -57.02 2.59 -54.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251085947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.991 kcal (2) G-P(sol) polarization free energy of solvation -57.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds