Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47340 * 2 1 4 4 C 1.52998 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47726 * 304.99660 * 4 3 2 6 6 C 1.53095 * 109.47731 * 184.97852 * 4 3 2 7 7 C 1.53178 * 109.16386 * 182.39761 * 6 4 3 8 8 H 1.09000 * 109.53971 * 297.11287 * 7 6 4 9 9 N 1.46898 * 109.54358 * 176.84482 * 7 6 4 10 10 C 1.46904 * 110.99513 * 152.39677 * 9 7 6 11 11 H 1.08994 * 109.47493 * 328.66699 * 10 9 7 12 12 C 1.50705 * 109.47171 * 88.67372 * 10 9 7 13 13 H 1.07997 * 119.99616 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99797 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00161 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99881 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47140 * 90.00024 * 16 14 12 18 18 H 1.48501 * 109.47016 * 210.00415 * 16 14 12 19 19 H 1.48503 * 109.47092 * 329.99910 * 16 14 12 20 20 C 1.53006 * 109.46840 * 208.66867 * 10 9 7 21 21 C 1.53000 * 109.47004 * 65.65271 * 20 10 9 22 22 C 1.53182 * 109.03459 * 56.97693 * 7 6 4 23 23 C 1.53091 * 109.16204 * 303.01934 * 22 7 6 24 24 O 1.42895 * 109.49094 * 65.03037 * 4 3 2 25 25 H 1.09004 * 109.46898 * 60.00582 * 1 2 3 26 26 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47704 * 300.00193 * 1 2 3 28 28 H 1.09000 * 109.47704 * 239.99806 * 2 1 3 29 29 H 1.09004 * 109.46898 * 119.99418 * 2 1 3 30 30 H 1.09000 * 109.46880 * 59.99302 * 3 2 1 31 31 H 1.08995 * 109.46586 * 300.00133 * 3 2 1 32 32 H 1.09007 * 109.52194 * 302.30230 * 6 4 3 33 33 H 1.08993 * 109.52357 * 62.49073 * 6 4 3 34 34 H 1.00898 * 111.00080 * 28.44594 * 9 7 6 35 35 H 0.96999 * 120.00014 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46823 * 185.65343 * 20 10 9 37 37 H 1.08998 * 109.46986 * 305.65398 * 20 10 9 38 38 H 1.09000 * 109.46945 * 54.18517 * 21 20 10 39 39 H 1.09001 * 109.46860 * 174.18408 * 21 20 10 40 40 H 1.08997 * 109.47461 * 294.18940 * 21 20 10 41 41 H 1.08996 * 109.52202 * 62.92879 * 22 7 6 42 42 H 1.09001 * 109.52287 * 183.11705 * 22 7 6 43 43 H 1.09003 * 109.48000 * 177.58956 * 23 22 7 44 44 H 1.08996 * 109.48375 * 297.61508 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0805 2.8804 0.1259 7 6 5.6111 2.8776 0.0656 8 1 6.0083 2.3193 0.9133 9 7 6.1070 4.2596 0.1091 10 6 7.4528 4.3177 0.6954 11 1 7.5625 3.5224 1.4327 12 6 8.4822 4.1412 -0.3910 13 1 8.1681 3.9996 -1.4146 14 6 9.8248 4.1604 -0.0782 15 7 10.2072 4.3334 1.1682 16 14 11.1008 3.9409 -1.4248 17 1 11.4657 5.2681 -1.9820 18 1 12.3107 3.2918 -0.8591 19 1 10.5402 3.0882 -2.5036 20 6 7.6552 5.6739 1.3742 21 6 6.7040 5.7945 2.5665 22 6 6.0584 2.2135 -1.2403 23 6 5.4715 0.8014 -1.3127 24 8 4.0473 0.8736 -1.2202 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6847 3.4801 -0.6938 33 1 3.7542 3.3012 1.0769 34 1 5.4678 4.8576 0.6110 35 1 11.1518 4.3465 1.3883 36 1 8.6851 5.7563 1.7213 37 1 7.4471 6.4717 0.6613 38 1 6.8411 4.9396 3.2286 39 1 6.9187 6.7140 3.1111 40 1 5.6744 5.8157 2.2093 41 1 5.7026 2.7997 -2.0876 42 1 7.1466 2.1574 -1.2664 43 1 5.7513 0.3396 -2.2596 44 1 5.8597 0.2037 -0.4880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251085950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -77.663355 kcal Electronic energy + Delta-G solvation = -20076.671979 eV Core-core repulsion = 17220.659798 eV Total energy + Delta-G solvation = -2856.012180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.32138 -36.41054 -34.89531 -33.34572 -31.66966 -31.02104 -29.33076 -27.16417 -25.91077 -23.50282 -22.66300 -22.06306 -20.84139 -19.63664 -19.39472 -16.36816 -16.17510 -15.63955 -14.87184 -14.84275 -14.47089 -14.30325 -13.95128 -13.60609 -13.38362 -12.76277 -12.60985 -12.48912 -12.18517 -12.12435 -11.70583 -11.37443 -11.22113 -11.08551 -10.93576 -10.83917 -10.77273 -10.63821 -10.59030 -10.22688 -10.11346 -9.82661 -9.63753 -9.54603 -9.11938 -8.93493 -8.32540 -7.23691 -5.95836 -3.99189 3.32515 3.39205 3.42628 4.03516 4.44616 4.67230 4.98260 5.04382 5.14098 5.30613 5.32529 5.38548 5.39439 5.51968 5.63265 5.74002 5.77361 5.80558 5.84302 5.89862 6.07001 6.09740 6.14222 6.15978 6.19437 6.23601 6.30992 6.38909 6.39898 6.51568 6.80573 6.83277 7.00183 7.07901 7.19781 7.50740 7.55836 7.78531 7.94292 8.34079 8.42060 8.77454 9.08584 9.65337 11.09519 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.005147 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.324133 B = 5438.869166 C = 6248.132999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.095 3.905 5 H 0.052 0.948 6 C -0.153 4.153 7 C 0.099 3.901 8 H 0.034 0.966 9 N -0.682 5.682 10 C 0.219 3.781 11 H 0.002 0.998 12 C -0.489 4.489 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.141 4.141 23 C 0.061 3.939 24 O -0.383 6.383 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.318 0.682 35 H 0.259 0.741 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 -5.747 -0.216 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.037 3.963 5 H 0.070 0.930 6 C -0.191 4.191 7 C -0.011 4.011 8 H 0.052 0.948 9 N -0.313 5.313 10 C 0.111 3.889 11 H 0.020 0.980 12 C -0.528 4.528 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.167 4.167 21 C -0.207 4.207 22 C -0.179 4.179 23 C -0.016 4.016 24 O -0.303 6.303 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.632 -5.802 -0.896 14.843 hybrid contribution 0.884 -0.062 0.558 1.047 sum -12.749 -5.864 -0.337 14.037 Atomic orbital electron populations 1.21781 0.96217 1.01318 1.01595 1.21485 0.95259 0.96874 1.02397 1.21631 0.93231 0.97365 1.02533 1.22033 0.93940 0.93149 0.87224 0.92994 1.22474 0.97243 0.97162 1.02198 1.21376 0.91473 0.91635 0.96629 0.94785 1.60743 1.05175 1.06136 1.59229 1.19257 0.84089 0.92704 0.92827 0.98013 1.21259 0.89753 1.47230 0.94510 0.91808 1.24971 0.98555 0.95765 0.95356 1.69871 1.15726 1.51073 1.17058 0.86585 0.81022 0.78214 0.82094 1.20818 1.21497 1.19953 1.21808 1.01566 0.98713 0.94577 1.21877 0.99104 0.99931 0.99771 1.22254 1.02985 0.94302 0.98370 1.22659 0.80270 0.97400 1.01275 1.87839 1.21685 1.82356 1.38374 0.92801 0.93007 0.92994 0.91209 0.92407 0.90966 0.91170 0.90651 0.91903 0.86440 0.93152 0.88230 0.94096 0.93956 0.94398 0.94704 0.91332 0.89010 0.89343 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.28 5.83 -26.73 -0.16 -1.43 16 3 C -0.11 -1.25 4.92 -26.73 -0.13 -1.38 16 4 C 0.09 1.32 2.64 -26.68 -0.07 1.25 16 5 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.15 -2.32 4.66 -26.59 -0.12 -2.44 16 7 C 0.10 1.86 2.59 -67.53 -0.17 1.68 16 8 H 0.03 0.69 7.34 -51.93 -0.38 0.31 16 9 N -0.68 -14.28 6.17 -100.75 -0.62 -14.90 16 10 C 0.22 5.35 2.03 -68.86 -0.14 5.21 16 11 H 0.00 0.06 7.33 -51.93 -0.38 -0.32 16 12 C -0.49 -13.17 7.49 -34.44 -0.26 -13.43 16 13 H 0.06 1.75 7.02 -52.49 -0.37 1.38 16 14 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 15 N -0.90 -25.32 11.29 55.43 0.63 -24.69 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C -0.13 -3.00 5.33 -26.73 -0.14 -3.14 16 21 C -0.15 -2.88 9.66 37.16 0.36 -2.52 16 22 C -0.14 -2.60 5.26 -26.59 -0.14 -2.74 16 23 C 0.06 0.95 6.84 37.20 0.25 1.21 16 24 O -0.38 -5.95 9.94 -35.23 -0.35 -6.30 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.32 6.13 6.17 -39.29 -0.24 5.89 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.60 6.67 -51.93 -0.35 0.25 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.93 6.41 -51.93 -0.33 1.60 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -27.74 335.87 -9.00 -36.74 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.24 Total: 5.11 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.45 Total: -17.32 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.00 Total: -39.59 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.35 Total: -6.30 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.74 -9.00 -36.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251085950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.926 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds