Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47340 * 2 1 4 4 C 1.52998 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47726 * 304.99660 * 4 3 2 6 6 C 1.53095 * 109.47731 * 184.97852 * 4 3 2 7 7 C 1.53178 * 109.16386 * 182.39761 * 6 4 3 8 8 H 1.09000 * 109.53971 * 297.11287 * 7 6 4 9 9 N 1.46898 * 109.54358 * 176.84482 * 7 6 4 10 10 C 1.46904 * 110.99513 * 152.39677 * 9 7 6 11 11 H 1.08994 * 109.47493 * 328.66699 * 10 9 7 12 12 C 1.50705 * 109.47171 * 88.67372 * 10 9 7 13 13 H 1.07997 * 119.99616 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99797 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00161 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99881 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47140 * 90.00024 * 16 14 12 18 18 H 1.48501 * 109.47016 * 210.00415 * 16 14 12 19 19 H 1.48503 * 109.47092 * 329.99910 * 16 14 12 20 20 C 1.53006 * 109.46840 * 208.66867 * 10 9 7 21 21 C 1.53000 * 109.47004 * 65.65271 * 20 10 9 22 22 C 1.53182 * 109.03459 * 56.97693 * 7 6 4 23 23 C 1.53091 * 109.16204 * 303.01934 * 22 7 6 24 24 O 1.42895 * 109.49094 * 65.03037 * 4 3 2 25 25 H 1.09004 * 109.46898 * 60.00582 * 1 2 3 26 26 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47704 * 300.00193 * 1 2 3 28 28 H 1.09000 * 109.47704 * 239.99806 * 2 1 3 29 29 H 1.09004 * 109.46898 * 119.99418 * 2 1 3 30 30 H 1.09000 * 109.46880 * 59.99302 * 3 2 1 31 31 H 1.08995 * 109.46586 * 300.00133 * 3 2 1 32 32 H 1.09007 * 109.52194 * 302.30230 * 6 4 3 33 33 H 1.08993 * 109.52357 * 62.49073 * 6 4 3 34 34 H 1.00898 * 111.00080 * 28.44594 * 9 7 6 35 35 H 0.96999 * 120.00014 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46823 * 185.65343 * 20 10 9 37 37 H 1.08998 * 109.46986 * 305.65398 * 20 10 9 38 38 H 1.09000 * 109.46945 * 54.18517 * 21 20 10 39 39 H 1.09001 * 109.46860 * 174.18408 * 21 20 10 40 40 H 1.08997 * 109.47461 * 294.18940 * 21 20 10 41 41 H 1.08996 * 109.52202 * 62.92879 * 22 7 6 42 42 H 1.09001 * 109.52287 * 183.11705 * 22 7 6 43 43 H 1.09003 * 109.48000 * 177.58956 * 23 22 7 44 44 H 1.08996 * 109.48375 * 297.61508 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0805 2.8804 0.1259 7 6 5.6111 2.8776 0.0656 8 1 6.0083 2.3193 0.9133 9 7 6.1070 4.2596 0.1091 10 6 7.4528 4.3177 0.6954 11 1 7.5625 3.5224 1.4327 12 6 8.4822 4.1412 -0.3910 13 1 8.1681 3.9996 -1.4146 14 6 9.8248 4.1604 -0.0782 15 7 10.2072 4.3334 1.1682 16 14 11.1008 3.9409 -1.4248 17 1 11.4657 5.2681 -1.9820 18 1 12.3107 3.2918 -0.8591 19 1 10.5402 3.0882 -2.5036 20 6 7.6552 5.6739 1.3742 21 6 6.7040 5.7945 2.5665 22 6 6.0584 2.2135 -1.2403 23 6 5.4715 0.8014 -1.3127 24 8 4.0473 0.8736 -1.2202 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6847 3.4801 -0.6938 33 1 3.7542 3.3012 1.0769 34 1 5.4678 4.8576 0.6110 35 1 11.1518 4.3465 1.3883 36 1 8.6851 5.7563 1.7213 37 1 7.4471 6.4717 0.6613 38 1 6.8411 4.9396 3.2286 39 1 6.9187 6.7140 3.1111 40 1 5.6744 5.8157 2.2093 41 1 5.7026 2.7997 -2.0876 42 1 7.1466 2.1574 -1.2664 43 1 5.7513 0.3396 -2.2596 44 1 5.8597 0.2037 -0.4880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251085950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -93.778037 kcal Electronic energy + Delta-G solvation = -20077.370764 eV Core-core repulsion = 17220.659798 eV Total energy + Delta-G solvation = -2856.710965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62028 -38.09215 -35.85261 -35.04237 -33.58144 -32.12235 -30.92202 -28.72017 -27.34229 -25.05406 -24.27601 -23.21323 -21.84730 -21.37509 -20.92719 -18.34138 -17.39825 -16.97418 -16.75778 -16.21936 -15.78720 -15.62301 -15.37988 -14.98808 -14.68064 -14.50703 -13.94413 -13.72639 -13.54194 -13.29816 -13.07174 -12.97926 -12.80460 -12.60183 -12.45678 -12.26916 -12.14118 -11.95698 -11.81641 -11.68100 -11.59321 -11.46446 -11.38429 -10.98436 -10.95380 -10.43837 -10.33186 -9.02936 -8.05157 -6.15481 1.40557 1.41993 1.51524 2.44125 2.87204 3.19583 3.45639 3.76968 3.99278 4.03416 4.18895 4.26846 4.32813 4.35779 4.41417 4.49262 4.55423 4.56573 4.69847 4.72707 4.75845 4.82952 4.85333 4.97335 5.00793 5.07323 5.12804 5.14616 5.22213 5.29191 5.32473 5.37474 5.43804 5.45929 5.53362 5.62289 5.77457 5.91665 6.33447 6.38683 6.54962 6.97513 7.01543 7.52778 8.98103 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.005147 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.324133 B = 5438.869166 C = 6248.132999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C 0.092 3.908 5 H 0.053 0.947 6 C -0.141 4.141 7 C 0.097 3.903 8 H 0.015 0.985 9 N -0.682 5.682 10 C 0.226 3.774 11 H -0.032 1.032 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.008 3.992 15 N -0.921 5.921 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.136 4.136 23 C 0.068 3.932 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.329 0.671 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 -5.931 -0.359 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.142 4.142 4 C 0.034 3.966 5 H 0.071 0.929 6 C -0.180 4.180 7 C -0.014 4.014 8 H 0.033 0.967 9 N -0.314 5.314 10 C 0.118 3.882 11 H -0.015 1.015 12 C -0.540 4.540 13 H 0.072 0.928 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.163 4.163 21 C -0.196 4.196 22 C -0.174 4.174 23 C -0.009 4.009 24 O -0.307 6.307 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.422 -5.985 -1.043 16.576 hybrid contribution 1.418 -0.008 0.607 1.543 sum -14.004 -5.992 -0.436 15.238 Atomic orbital electron populations 1.21753 0.94763 1.02020 1.02085 1.21460 0.96521 0.96032 1.01874 1.21630 0.90963 0.98262 1.03344 1.22204 0.95729 0.91994 0.86684 0.92899 1.22388 0.94041 0.98388 1.03134 1.21432 0.94094 0.89975 0.95868 0.96720 1.60643 1.04084 1.07887 1.58769 1.19010 0.85524 0.92152 0.91487 1.01492 1.21496 0.90787 1.47089 0.94615 0.92842 1.25659 1.00348 0.95673 0.97277 1.70000 1.15935 1.51756 1.18536 0.85667 0.78711 0.78192 0.79726 1.20422 1.21141 1.19515 1.21641 1.00904 0.97731 0.96031 1.21741 0.99244 1.00620 0.97957 1.22151 1.01016 0.96298 0.97983 1.22585 0.80497 0.95398 1.02412 1.87851 1.21133 1.82389 1.39291 0.92700 0.92273 0.92110 0.92542 0.92176 0.89169 0.91296 0.90696 0.90143 0.85233 0.93235 0.91426 0.94520 0.94636 0.92448 0.92292 0.92112 0.92260 0.87618 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.49 16 2 C -0.12 -2.26 5.83 30.59 0.18 -2.08 16 3 C -0.10 -2.11 4.92 30.60 0.15 -1.96 16 4 C 0.09 2.39 2.64 30.63 0.08 2.47 16 5 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.14 -4.05 4.66 30.69 0.14 -3.91 16 7 C 0.10 3.60 2.59 45.04 0.12 3.72 16 8 H 0.01 0.61 7.34 -2.39 -0.02 0.60 16 9 N -0.68 -28.60 6.17 -472.67 -2.91 -31.51 16 10 C 0.23 11.34 2.03 44.17 0.09 11.43 16 11 H -0.03 -1.82 7.33 -2.39 -0.02 -1.84 16 12 C -0.50 -27.69 7.49 25.60 0.19 -27.50 16 13 H 0.05 3.00 7.02 -2.91 -0.02 2.98 16 14 C 0.01 0.45 5.29 84.65 0.45 0.90 16 15 N -0.92 -53.22 11.29 21.45 0.24 -52.97 16 16 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 C -0.12 -5.87 5.33 30.60 0.16 -5.71 16 21 C -0.14 -5.15 9.66 71.98 0.70 -4.45 16 22 C -0.14 -5.08 5.26 30.69 0.16 -4.92 16 23 C 0.07 2.08 6.84 72.01 0.49 2.57 16 24 O -0.39 -11.45 9.94 -148.98 -1.48 -12.94 16 25 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.33 12.29 6.17 -89.70 -0.55 11.73 16 35 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.07 3.65 5.94 -2.39 -0.01 3.63 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.89 6.67 -2.39 -0.02 1.88 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.59 6.41 -2.39 -0.02 2.57 16 43 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -60.39 335.87 1.88 -58.50 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.39 Total: 23.45 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.62 Total: -30.93 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.67 Total: -84.48 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.48 Total: -12.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.39 1.88 -58.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251085950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.273 kcal (2) G-P(sol) polarization free energy of solvation -60.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds