Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53004 * 109.47092 * 119.99993 * 2 1 3 5 5 N 1.46897 * 109.47026 * 59.06456 * 4 2 1 6 6 C 1.46897 * 110.99976 * 76.53905 * 5 4 2 7 7 C 1.50703 * 109.47233 * 282.59705 * 6 5 4 8 8 H 1.08000 * 119.99976 * 359.43989 * 7 6 5 9 9 C 1.37878 * 119.99970 * 179.16395 * 7 6 5 10 10 N 1.31512 * 119.99937 * 0.27498 * 9 7 6 11 11 Si 1.86798 * 119.99927 * 180.27737 * 9 7 6 12 12 H 1.48500 * 109.47069 * 90.00196 * 11 9 7 13 13 H 1.48501 * 109.46857 * 210.00073 * 11 9 7 14 14 H 1.48494 * 109.47199 * 330.00002 * 11 9 7 15 15 C 1.46905 * 110.99965 * 200.49211 * 5 4 2 16 16 H 1.08994 * 109.46778 * 298.25289 * 15 5 4 17 17 C 1.53003 * 109.46765 * 58.25149 * 15 5 4 18 18 C 1.53006 * 109.46655 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.47137 * 299.99708 * 18 17 15 20 20 C 1.53001 * 109.46953 * 60.00042 * 19 18 17 21 21 C 1.52994 * 109.47418 * 300.00061 * 20 19 18 22 22 H 1.09000 * 109.47262 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47156 * 299.99909 * 21 20 19 24 24 H 1.09005 * 109.47286 * 65.45196 * 1 2 3 25 25 H 1.09003 * 109.47477 * 185.45725 * 1 2 3 26 26 H 1.09003 * 109.47045 * 305.45658 * 1 2 3 27 27 H 1.09004 * 109.47135 * 239.99657 * 2 1 3 28 28 H 1.09004 * 109.46892 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47143 * 299.99801 * 3 2 1 30 30 H 1.08998 * 109.47284 * 60.00252 * 3 2 1 31 31 H 1.09002 * 109.47193 * 299.06659 * 4 2 1 32 32 H 1.09000 * 109.47310 * 179.06666 * 4 2 1 33 33 H 1.09007 * 109.47067 * 162.59862 * 6 5 4 34 34 H 1.08999 * 109.47147 * 42.60201 * 6 5 4 35 35 H 0.97002 * 120.00058 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.47089 * 299.99415 * 17 15 5 37 37 H 1.08994 * 109.47358 * 60.00496 * 17 15 5 38 38 H 1.09000 * 109.47010 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.46968 * 60.00091 * 18 17 15 40 40 H 1.09004 * 109.47061 * 300.00386 * 19 18 17 41 41 H 1.08997 * 109.47031 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.46974 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46956 * 60.00280 * 20 19 18 44 44 H 0.96698 * 114.00028 * 300.00103 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5319 -2.0995 1.2606 6 6 2.2765 -2.9428 0.3160 7 6 1.8036 -2.6636 -1.0874 8 1 1.0212 -1.9393 -1.2594 9 6 2.3737 -3.3286 -2.1521 10 7 3.3265 -4.2106 -1.9426 11 14 1.7929 -2.9768 -3.8923 12 1 2.6005 -1.8727 -4.4700 13 1 1.9548 -4.1963 -4.7242 14 1 0.3616 -2.5820 -3.8661 15 6 1.5729 -2.6646 2.6160 16 1 2.6049 -2.6968 2.9651 17 6 0.7428 -1.7903 3.5582 18 6 0.7860 -2.3785 4.9700 19 6 0.2103 -3.7959 4.9499 20 6 1.0403 -4.6701 4.0076 21 6 0.9972 -4.0820 2.5958 22 1 1.5888 -4.7045 1.9247 23 8 -0.3560 -4.0401 2.1384 24 1 -0.3634 0.4270 -0.9348 25 1 -0.3634 -1.0230 0.0977 26 1 -0.3633 0.5961 0.8371 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6904 -0.1979 2.1392 32 1 3.1298 -0.7358 1.2410 33 1 2.1067 -3.9929 0.5545 34 1 3.3410 -2.7207 0.3917 35 1 3.7274 -4.6787 -2.6916 36 1 1.1532 -0.7807 3.5730 37 1 -0.2892 -1.7581 3.2091 38 1 0.1950 -1.7555 5.6414 39 1 1.8181 -2.4104 5.3189 40 1 -0.8219 -3.7639 4.6009 41 1 0.2406 -4.2147 5.9557 42 1 0.6304 -5.6800 3.9936 43 1 2.0724 -4.7021 4.3565 44 1 -0.7852 -4.9057 2.1001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252390982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = -61.736005 kcal Electronic energy + Delta-G solvation = -21039.952635 eV Core-core repulsion = 18184.631116 eV Total energy + Delta-G solvation = -2855.321519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.26549 -36.64500 -34.52476 -33.44315 -32.40293 -29.92703 -28.56399 -26.88218 -26.35613 -24.49943 -22.48364 -21.78292 -20.34955 -19.19589 -18.89496 -16.58767 -16.09526 -15.64313 -14.79030 -14.62113 -14.19081 -14.10034 -13.45435 -13.33404 -13.13419 -12.60512 -12.49973 -12.20093 -12.01820 -11.74628 -11.66163 -11.48664 -11.09312 -11.01410 -10.84986 -10.78607 -10.48623 -10.47956 -10.28617 -10.11515 -10.03182 -9.98145 -9.43957 -9.23986 -9.10879 -8.83108 -8.26354 -7.04384 -5.93916 -3.90808 3.35907 3.42432 3.47396 4.47430 4.72119 4.83353 5.00178 5.18708 5.27661 5.40201 5.49308 5.65096 5.68579 5.74147 5.77433 5.81961 5.87304 5.96830 6.04537 6.11934 6.15243 6.20007 6.28204 6.36578 6.41000 6.46133 6.51444 6.54587 6.60994 6.65504 6.78913 6.85826 6.93866 7.33160 7.37403 7.42227 7.49709 7.97674 8.22446 8.30284 8.37188 8.69459 9.16315 9.70363 11.16801 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.007920 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.479696 B = 3534.307201 C = 4439.515544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.071 3.929 5 N -0.517 5.517 6 C 0.188 3.812 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.051 3.949 10 N -0.903 5.903 11 Si 0.890 3.110 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.097 3.903 16 H 0.032 0.968 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.153 4.153 21 C 0.113 3.887 22 H 0.063 0.937 23 O -0.538 6.538 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.031 0.969 34 H -0.013 1.013 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 2.980 11.363 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.057 4.057 5 N -0.241 5.241 6 C 0.064 3.936 7 C -0.532 4.532 8 H 0.095 0.905 9 C -0.149 4.149 10 N -0.544 5.544 11 Si 0.718 3.282 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.012 4.012 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.191 4.191 21 C 0.053 3.947 22 H 0.081 0.919 23 O -0.341 6.341 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.612 3.515 11.075 12.501 hybrid contribution 0.729 -0.590 -0.674 1.155 sum -3.883 2.925 10.400 11.481 Atomic orbital electron populations 1.21645 0.95593 1.02907 0.98479 1.21440 0.96121 0.93703 1.01121 1.21847 1.00304 0.97654 1.00350 1.22044 0.95899 0.90459 0.97312 1.62066 1.56505 1.01542 1.04002 1.19879 0.90510 0.92473 0.90786 1.21417 1.19335 1.22224 0.90185 0.90470 1.24994 0.95392 0.95493 0.99049 1.69961 1.26450 1.26870 1.31104 0.86619 0.79278 0.77525 0.84794 1.20892 1.21491 1.19721 1.21435 0.95680 0.92909 0.91201 0.95022 1.21590 1.02034 0.97892 0.93193 1.21525 1.00352 0.96225 0.97382 1.21415 1.00226 0.95190 0.98100 1.22301 1.00684 0.98898 0.97251 1.21852 0.84348 0.96508 0.91946 0.91933 1.86664 1.25431 1.32998 1.88998 0.94874 0.90215 0.95034 0.87293 0.93557 0.93412 0.94010 0.92810 0.96356 0.95112 0.99481 0.93233 0.92425 0.90371 0.92453 0.92749 0.91353 0.92981 0.92087 0.91659 0.79446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.41 37.16 0.31 -2.10 16 2 C -0.11 -2.05 2.41 -90.62 -0.22 -2.27 16 3 C -0.14 -2.33 9.19 37.16 0.34 -1.99 16 4 C 0.07 1.40 4.31 -3.82 -0.02 1.38 16 5 N -0.52 -10.99 3.27 -228.08 -0.74 -11.73 16 6 C 0.19 4.82 4.62 -4.98 -0.02 4.79 16 7 C -0.49 -13.48 7.29 -34.44 -0.25 -13.73 16 8 H 0.08 2.08 4.78 -52.49 -0.25 1.83 16 9 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.10 1.76 1.73 -67.71 -0.12 1.65 16 16 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 17 C -0.11 -1.71 4.86 -26.73 -0.13 -1.84 16 18 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 19 C -0.11 -1.38 5.78 -26.73 -0.15 -1.53 16 20 C -0.15 -2.05 5.64 -26.73 -0.15 -2.20 16 21 C 0.11 1.93 2.89 -26.73 -0.08 1.85 16 22 H 0.06 1.23 5.97 -51.93 -0.31 0.92 16 23 O -0.54 -9.37 11.84 -35.23 -0.42 -9.78 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.70 6.90 -51.93 -0.36 1.34 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.11 2.51 5.07 -51.93 -0.26 2.24 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.95 5.43 -51.93 -0.28 0.67 16 32 H 0.02 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.03 0.84 5.39 -51.92 -0.28 0.56 16 34 H -0.01 -0.35 7.69 -51.93 -0.40 -0.75 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 0.88 5.99 -51.93 -0.31 0.57 16 37 H 0.08 1.34 7.68 -51.93 -0.40 0.94 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.36 4.83 9.08 45.56 0.41 5.24 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -29.56 324.97 -8.31 -37.87 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.02 Total: 4.28 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.74 Total: -16.30 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.01 Total: -37.71 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.42 Total: -9.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.56 -8.31 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252390982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.863 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds