Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53004 * 109.47092 * 119.99993 * 2 1 3 5 5 N 1.46897 * 109.47026 * 59.06456 * 4 2 1 6 6 C 1.46897 * 110.99976 * 76.53905 * 5 4 2 7 7 C 1.50703 * 109.47233 * 282.59705 * 6 5 4 8 8 H 1.08000 * 119.99976 * 359.43989 * 7 6 5 9 9 C 1.37878 * 119.99970 * 179.16395 * 7 6 5 10 10 N 1.31512 * 119.99937 * 0.27498 * 9 7 6 11 11 Si 1.86798 * 119.99927 * 180.27737 * 9 7 6 12 12 H 1.48500 * 109.47069 * 90.00196 * 11 9 7 13 13 H 1.48501 * 109.46857 * 210.00073 * 11 9 7 14 14 H 1.48494 * 109.47199 * 330.00002 * 11 9 7 15 15 C 1.46905 * 110.99965 * 200.49211 * 5 4 2 16 16 H 1.08994 * 109.46778 * 298.25289 * 15 5 4 17 17 C 1.53003 * 109.46765 * 58.25149 * 15 5 4 18 18 C 1.53006 * 109.46655 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.47137 * 299.99708 * 18 17 15 20 20 C 1.53001 * 109.46953 * 60.00042 * 19 18 17 21 21 C 1.52994 * 109.47418 * 300.00061 * 20 19 18 22 22 H 1.09000 * 109.47262 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47156 * 299.99909 * 21 20 19 24 24 H 1.09005 * 109.47286 * 65.45196 * 1 2 3 25 25 H 1.09003 * 109.47477 * 185.45725 * 1 2 3 26 26 H 1.09003 * 109.47045 * 305.45658 * 1 2 3 27 27 H 1.09004 * 109.47135 * 239.99657 * 2 1 3 28 28 H 1.09004 * 109.46892 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47143 * 299.99801 * 3 2 1 30 30 H 1.08998 * 109.47284 * 60.00252 * 3 2 1 31 31 H 1.09002 * 109.47193 * 299.06659 * 4 2 1 32 32 H 1.09000 * 109.47310 * 179.06666 * 4 2 1 33 33 H 1.09007 * 109.47067 * 162.59862 * 6 5 4 34 34 H 1.08999 * 109.47147 * 42.60201 * 6 5 4 35 35 H 0.97002 * 120.00058 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.47089 * 299.99415 * 17 15 5 37 37 H 1.08994 * 109.47358 * 60.00496 * 17 15 5 38 38 H 1.09000 * 109.47010 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.46968 * 60.00091 * 18 17 15 40 40 H 1.09004 * 109.47061 * 300.00386 * 19 18 17 41 41 H 1.08997 * 109.47031 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.46974 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46956 * 60.00280 * 20 19 18 44 44 H 0.96698 * 114.00028 * 300.00103 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5319 -2.0995 1.2606 6 6 2.2765 -2.9428 0.3160 7 6 1.8036 -2.6636 -1.0874 8 1 1.0212 -1.9393 -1.2594 9 6 2.3737 -3.3286 -2.1521 10 7 3.3265 -4.2106 -1.9426 11 14 1.7929 -2.9768 -3.8923 12 1 2.6005 -1.8727 -4.4700 13 1 1.9548 -4.1963 -4.7242 14 1 0.3616 -2.5820 -3.8661 15 6 1.5729 -2.6646 2.6160 16 1 2.6049 -2.6968 2.9651 17 6 0.7428 -1.7903 3.5582 18 6 0.7860 -2.3785 4.9700 19 6 0.2103 -3.7959 4.9499 20 6 1.0403 -4.6701 4.0076 21 6 0.9972 -4.0820 2.5958 22 1 1.5888 -4.7045 1.9247 23 8 -0.3560 -4.0401 2.1384 24 1 -0.3634 0.4270 -0.9348 25 1 -0.3634 -1.0230 0.0977 26 1 -0.3633 0.5961 0.8371 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6904 -0.1979 2.1392 32 1 3.1298 -0.7358 1.2410 33 1 2.1067 -3.9929 0.5545 34 1 3.3410 -2.7207 0.3917 35 1 3.7274 -4.6787 -2.6916 36 1 1.1532 -0.7807 3.5730 37 1 -0.2892 -1.7581 3.2091 38 1 0.1950 -1.7555 5.6414 39 1 1.8181 -2.4104 5.3189 40 1 -0.8219 -3.7639 4.6009 41 1 0.2406 -4.2147 5.9557 42 1 0.6304 -5.6800 3.9936 43 1 2.0724 -4.7021 4.3565 44 1 -0.7852 -4.9057 2.1001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252390982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = -81.044396 kcal Electronic energy + Delta-G solvation = -21040.789910 eV Core-core repulsion = 18184.631116 eV Total energy + Delta-G solvation = -2856.158793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67379 -38.17911 -35.81904 -35.11927 -34.34400 -31.24536 -30.03879 -28.70689 -27.78305 -26.18056 -24.08484 -23.14935 -21.77681 -20.60925 -20.46679 -18.46000 -17.61235 -17.14158 -16.57028 -16.24845 -15.63642 -15.47936 -14.96416 -14.68160 -14.66923 -14.14510 -13.94432 -13.81752 -13.47337 -13.20149 -13.18992 -12.88466 -12.81596 -12.60206 -12.41662 -12.28586 -12.09064 -11.97924 -11.71790 -11.58923 -11.50442 -11.40099 -11.10823 -10.90013 -10.68105 -10.55162 -10.26532 -8.83060 -8.11211 -6.14956 1.40216 1.40815 1.52310 2.43613 3.19283 3.24068 3.52019 3.83407 3.99822 4.05009 4.20438 4.28494 4.33016 4.41976 4.47099 4.54916 4.58549 4.68241 4.74916 4.80242 4.91235 4.95345 4.96517 5.03627 5.09717 5.15556 5.21486 5.23891 5.31832 5.32278 5.34796 5.37315 5.41988 5.48514 5.63022 5.73304 5.84635 5.89408 6.22196 6.54337 6.78115 6.99698 7.08903 7.50491 8.99320 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.007920 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.479696 B = 3534.307201 C = 4439.515544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.071 3.929 5 N -0.519 5.519 6 C 0.206 3.794 7 C -0.496 4.496 8 H 0.080 0.920 9 C -0.004 4.004 10 N -0.941 5.941 11 Si 0.954 3.046 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.088 3.912 16 H 0.023 0.977 17 C -0.099 4.099 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.145 4.145 21 C 0.115 3.885 22 H 0.024 0.976 23 O -0.554 6.554 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.000 1.000 33 H 0.010 0.990 34 H -0.051 1.051 35 H 0.259 0.741 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 4.318 12.722 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.194 4.194 4 C -0.056 4.056 5 N -0.243 5.243 6 C 0.080 3.920 7 C -0.535 4.535 8 H 0.098 0.902 9 C -0.200 4.200 10 N -0.583 5.583 11 Si 0.780 3.220 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.189 1.189 15 C -0.021 4.021 16 H 0.041 0.959 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.183 4.183 21 C 0.055 3.945 22 H 0.042 0.958 23 O -0.360 6.360 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.028 0.972 34 H -0.033 1.033 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.088 4.857 12.449 14.684 hybrid contribution 1.182 -1.011 -1.055 1.879 sum -4.906 3.846 11.394 12.988 Atomic orbital electron populations 1.21516 0.94742 1.01436 0.99938 1.21359 0.96787 0.95471 0.98955 1.21761 1.00213 0.95355 1.02057 1.22117 0.94830 0.89864 0.98829 1.62045 1.55221 1.01822 1.05168 1.19514 0.88635 0.92156 0.91692 1.21730 1.18942 1.21692 0.91113 0.90204 1.25827 0.95590 0.95407 1.03199 1.70097 1.27857 1.28109 1.32212 0.85595 0.79069 0.77453 0.79871 1.20144 1.21199 1.18934 1.21650 0.96026 0.94371 0.90063 0.95907 1.21500 1.00267 0.97629 0.94246 1.21532 1.01356 0.96752 0.95502 1.21405 0.99450 0.94627 0.98971 1.22220 1.01469 0.99901 0.94697 1.21732 0.83656 0.95380 0.93719 0.95821 1.86604 1.25381 1.34632 1.89345 0.94015 0.93291 0.92686 0.91391 0.93727 0.92295 0.91673 0.90076 0.98212 0.97194 1.03313 0.93258 0.91969 0.91742 0.90170 0.92093 0.91716 0.90310 0.90361 0.91387 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.41 71.98 0.61 -3.70 16 2 C -0.11 -4.12 2.41 -10.79 -0.03 -4.15 16 3 C -0.14 -4.15 9.19 71.98 0.66 -3.48 16 4 C 0.07 2.83 4.31 86.31 0.37 3.20 16 5 N -0.52 -22.73 3.27 -875.51 -2.86 -25.59 16 6 C 0.21 11.15 4.62 85.56 0.40 11.54 16 7 C -0.50 -28.16 7.29 25.60 0.19 -27.97 16 8 H 0.08 4.42 4.78 -2.91 -0.01 4.41 16 9 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 10 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 11 Si 0.95 45.51 29.54 68.60 2.03 47.53 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 15 C 0.09 3.23 1.73 44.92 0.08 3.31 16 16 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 17 C -0.10 -2.92 4.86 30.60 0.15 -2.77 16 18 C -0.11 -2.56 5.92 30.60 0.18 -2.38 16 19 C -0.11 -2.31 5.78 30.59 0.18 -2.14 16 20 C -0.14 -3.66 5.64 30.59 0.17 -3.49 16 21 C 0.11 3.99 2.89 30.59 0.09 4.08 16 22 H 0.02 1.00 5.97 -2.39 -0.01 0.99 16 23 O -0.55 -19.39 11.84 -148.98 -1.76 -21.15 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 25 H 0.05 2.07 6.90 -2.39 -0.02 2.05 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 3.20 5.07 -2.39 -0.01 3.18 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.34 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.75 5.43 -2.39 -0.01 2.74 16 32 H 0.00 -0.02 7.70 -2.39 -0.02 -0.03 16 33 H 0.01 0.59 5.39 -2.38 -0.01 0.57 16 34 H -0.05 -3.06 7.69 -2.39 -0.02 -3.08 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.06 1.75 5.99 -2.39 -0.01 1.74 16 37 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.38 10.05 9.08 -74.06 -0.67 9.38 16 Total: -1.00 -66.29 324.97 1.48 -64.81 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.29 Total: 19.56 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.50 Total: -27.70 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.57 Total: -83.05 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.76 Total: -21.15 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.29 1.48 -64.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252390982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.239 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds