Wall clock time and date at job start Mon Mar 30 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46950 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47092 * 180.02562 * 7 6 5 9 9 H 1.08009 * 119.99873 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00054 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99645 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47069 * 60.00160 * 12 10 8 14 14 H 1.48505 * 109.46532 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47146 * 299.99864 * 12 10 8 16 16 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 17 17 C 1.53181 * 109.54763 * 179.82258 * 16 2 1 18 18 C 1.53092 * 109.15998 * 183.23968 * 17 16 2 19 19 O 1.42904 * 109.49280 * 57.47227 * 18 17 16 20 20 C 1.42903 * 114.09714 * 298.89323 * 19 18 17 21 21 C 1.53090 * 109.41692 * 61.14874 * 20 19 18 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 30 30 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 31 31 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 32 32 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 33 33 H 1.09005 * 109.47424 * 300.00229 * 7 6 5 34 34 H 1.09004 * 109.47266 * 59.99979 * 7 6 5 35 35 H 0.96998 * 120.00316 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.54531 * 299.99620 * 16 2 1 37 37 H 1.09003 * 109.51845 * 303.05697 * 17 16 2 38 38 H 1.09003 * 109.52022 * 63.23682 * 17 16 2 39 39 H 1.09005 * 109.40788 * 297.48882 * 18 17 16 40 40 H 1.09001 * 109.48325 * 177.50217 * 18 17 16 41 41 H 1.08998 * 109.47538 * 301.16878 * 20 19 18 42 42 H 1.08999 * 109.48995 * 181.14570 * 20 19 18 43 43 H 1.08996 * 109.52409 * 182.48775 * 21 20 19 44 44 H 1.09000 * 109.51939 * 62.30215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4913 0.0526 4.8955 8 6 1.9745 -0.6307 6.1487 9 1 2.5975 -1.5103 6.0784 10 6 1.6214 -0.1332 7.3852 11 7 0.8633 0.9380 7.4709 12 14 2.2210 -0.9799 8.9386 13 1 3.7058 -0.9779 8.9618 14 1 1.7069 -0.2541 10.1278 15 1 1.7274 -2.3803 8.9611 16 6 2.0401 -0.7211 -1.2492 17 6 3.5719 -0.7182 -1.2532 18 6 4.0722 -1.3697 -2.5451 19 8 3.5402 -0.6674 -3.6703 20 6 2.1131 -0.6789 -3.7438 21 6 1.5340 0.0022 -2.5011 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 -0.7208 1.2495 29 1 1.6767 -1.7489 1.2492 30 1 0.5438 0.0412 2.4402 31 1 1.6572 -1.7226 3.6869 32 1 3.1108 -0.6954 3.6872 33 1 1.8547 1.0801 4.8792 34 1 0.4014 0.0524 4.8783 35 1 0.6152 1.2882 8.3408 36 1 1.6774 -1.7491 -1.2505 37 1 3.9343 0.3084 -1.2003 38 1 3.9394 -1.2799 -0.3943 39 1 3.7447 -2.4089 -2.5772 40 1 5.1611 -1.3306 -2.5739 41 1 1.7600 -1.7090 -3.7915 42 1 1.7906 -0.1424 -4.6361 43 1 0.4456 -0.0447 -2.5338 44 1 1.8540 1.0438 -2.4742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258978205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:57 Heat of formation + Delta-G solvation = -77.281978 kcal Electronic energy + Delta-G solvation = -19679.589002 eV Core-core repulsion = 16823.593359 eV Total energy + Delta-G solvation = -2855.995643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15369 -37.66791 -35.02946 -32.88981 -31.52155 -31.30293 -29.00677 -27.24174 -25.97108 -24.87654 -23.64265 -22.82800 -20.66391 -20.53208 -18.31737 -16.45958 -16.25051 -16.17949 -15.54714 -14.93961 -14.87547 -14.48577 -14.29429 -14.02632 -13.69494 -13.31927 -12.95874 -12.60071 -12.42070 -12.04961 -11.87475 -11.75730 -11.66232 -11.34137 -11.13949 -10.96910 -10.91618 -10.90272 -10.57285 -10.51526 -10.16379 -10.09654 -9.94234 -9.62288 -9.29700 -9.13621 -8.34305 -7.75050 -5.98970 -4.01590 3.33646 3.37929 3.40331 3.70650 4.40056 4.49467 4.53522 4.66872 4.85112 4.96241 5.03922 5.12464 5.15363 5.23473 5.31368 5.33843 5.36843 5.49223 5.60369 5.69013 5.74555 5.81870 5.85844 5.90836 5.92717 5.99040 6.10467 6.13330 6.17668 6.34108 6.36722 6.41837 6.52052 6.68176 7.00143 7.01644 7.51767 7.74601 7.85046 7.99520 8.10385 8.44934 9.05559 9.62070 11.12451 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.044966 B = 0.003486 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.547682 B = 8030.884856 C = 8368.068579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.135 4.135 4 C 0.067 3.933 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.026 3.974 8 C -0.523 4.523 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.077 4.077 17 C -0.156 4.156 18 C 0.061 3.939 19 O -0.386 6.386 20 C 0.060 3.940 21 C -0.153 4.153 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.334 0.666 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.012 0.988 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -3.158 -21.532 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.192 4.192 4 C -0.062 4.062 5 N -0.320 5.320 6 C -0.062 4.062 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.096 4.096 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.305 6.305 20 C -0.016 4.016 21 C -0.191 4.191 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.153 0.847 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.999 -2.485 -21.525 21.760 hybrid contribution -0.472 -1.457 1.229 1.964 sum 1.527 -3.941 -20.296 20.731 Atomic orbital electron populations 1.21942 0.94943 1.01364 1.02134 1.20524 0.95290 0.96353 0.93330 1.21843 1.00775 0.94840 1.01698 1.22003 1.00001 0.94282 0.89936 1.60638 1.15989 1.53818 1.01555 1.22141 0.99360 0.95047 0.89688 1.19052 0.96017 0.96160 0.89892 1.21154 1.31616 1.12308 0.91067 0.92861 1.24999 0.95175 0.95030 0.99125 1.69956 1.36474 1.22340 1.24507 0.86653 0.79155 0.79553 0.82592 1.20216 1.21258 1.20305 1.21180 0.94954 0.99173 0.94283 1.22374 0.96067 1.02816 0.98056 1.22596 0.98757 0.94634 0.85629 1.87912 1.20438 1.75980 1.46132 1.22581 0.81131 0.99698 0.98226 1.22349 1.00992 1.01126 0.94591 0.91749 0.92598 0.93225 0.92873 0.93563 0.91051 0.91341 0.96304 0.84710 0.96910 0.92510 0.95680 0.96926 0.92938 0.91521 0.90354 0.90551 0.93517 0.89069 0.93546 0.89204 0.90764 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.80 37.16 0.29 -1.34 16 2 C -0.05 -0.63 0.40 -154.51 -0.06 -0.70 16 3 C -0.13 -1.64 7.61 37.16 0.28 -1.36 16 4 C 0.07 0.96 4.30 -3.83 -0.02 0.95 16 5 N -0.69 -12.15 5.71 -113.78 -0.65 -12.80 16 6 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 7 C 0.03 0.69 5.23 -27.89 -0.15 0.54 16 8 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 9 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 12 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.08 -0.77 1.63 -90.44 -0.15 -0.92 16 17 C -0.16 -1.55 4.70 -26.59 -0.13 -1.68 16 18 C 0.06 0.57 6.84 37.20 0.25 0.82 16 19 O -0.39 -4.20 10.77 -35.23 -0.38 -4.58 16 20 C 0.06 0.53 6.84 37.20 0.25 0.78 16 21 C -0.15 -1.37 4.70 -26.59 -0.13 -1.50 16 22 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 23 H 0.06 0.54 6.51 -51.93 -0.34 0.21 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.66 6.37 -51.93 -0.33 0.33 16 26 H 0.05 0.50 6.36 -51.93 -0.33 0.17 16 27 H 0.07 1.01 7.60 -51.93 -0.39 0.62 16 28 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.33 5.77 6.77 -39.29 -0.27 5.50 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.84 6.28 -51.93 -0.33 0.51 16 38 H 0.08 0.77 6.63 -51.93 -0.34 0.43 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.60 6.62 -51.93 -0.34 0.26 16 44 H 0.08 0.75 6.28 -51.93 -0.33 0.42 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.25 329.01 -8.20 -38.45 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.87 Total: 0.33 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 0.03 Total: -16.74 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.09 Total: -39.20 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.38 Total: -4.58 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.25 -8.20 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258978205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.835 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds