Wall clock time and date at job start Mon Mar 30 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46950 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47092 * 180.02562 * 7 6 5 9 9 H 1.08009 * 119.99873 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00054 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99645 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47069 * 60.00160 * 12 10 8 14 14 H 1.48505 * 109.46532 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47146 * 299.99864 * 12 10 8 16 16 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 17 17 C 1.53181 * 109.54763 * 179.82258 * 16 2 1 18 18 C 1.53092 * 109.15998 * 183.23968 * 17 16 2 19 19 O 1.42904 * 109.49280 * 57.47227 * 18 17 16 20 20 C 1.42903 * 114.09714 * 298.89323 * 19 18 17 21 21 C 1.53090 * 109.41692 * 61.14874 * 20 19 18 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 30 30 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 31 31 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 32 32 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 33 33 H 1.09005 * 109.47424 * 300.00229 * 7 6 5 34 34 H 1.09004 * 109.47266 * 59.99979 * 7 6 5 35 35 H 0.96998 * 120.00316 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.54531 * 299.99620 * 16 2 1 37 37 H 1.09003 * 109.51845 * 303.05697 * 17 16 2 38 38 H 1.09003 * 109.52022 * 63.23682 * 17 16 2 39 39 H 1.09005 * 109.40788 * 297.48882 * 18 17 16 40 40 H 1.09001 * 109.48325 * 177.50217 * 18 17 16 41 41 H 1.08998 * 109.47538 * 301.16878 * 20 19 18 42 42 H 1.08999 * 109.48995 * 181.14570 * 20 19 18 43 43 H 1.08996 * 109.52409 * 182.48775 * 21 20 19 44 44 H 1.09000 * 109.51939 * 62.30215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4913 0.0526 4.8955 8 6 1.9745 -0.6307 6.1487 9 1 2.5975 -1.5103 6.0784 10 6 1.6214 -0.1332 7.3852 11 7 0.8633 0.9380 7.4709 12 14 2.2210 -0.9799 8.9386 13 1 3.7058 -0.9779 8.9618 14 1 1.7069 -0.2541 10.1278 15 1 1.7274 -2.3803 8.9611 16 6 2.0401 -0.7211 -1.2492 17 6 3.5719 -0.7182 -1.2532 18 6 4.0722 -1.3697 -2.5451 19 8 3.5402 -0.6674 -3.6703 20 6 2.1131 -0.6789 -3.7438 21 6 1.5340 0.0022 -2.5011 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 -0.7208 1.2495 29 1 1.6767 -1.7489 1.2492 30 1 0.5438 0.0412 2.4402 31 1 1.6572 -1.7226 3.6869 32 1 3.1108 -0.6954 3.6872 33 1 1.8547 1.0801 4.8792 34 1 0.4014 0.0524 4.8783 35 1 0.6152 1.2882 8.3408 36 1 1.6774 -1.7491 -1.2505 37 1 3.9343 0.3084 -1.2003 38 1 3.9394 -1.2799 -0.3943 39 1 3.7447 -2.4089 -2.5772 40 1 5.1611 -1.3306 -2.5739 41 1 1.7600 -1.7090 -3.7915 42 1 1.7906 -0.1424 -4.6361 43 1 0.4456 -0.0447 -2.5338 44 1 1.8540 1.0438 -2.4742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258978205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:57 Heat of formation + Delta-G solvation = -96.142716 kcal Electronic energy + Delta-G solvation = -19680.406865 eV Core-core repulsion = 16823.593359 eV Total energy + Delta-G solvation = -2856.813506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99638 -38.67462 -36.55179 -34.81659 -32.62059 -32.12115 -30.72142 -28.19118 -27.29232 -26.15315 -24.83177 -23.90302 -22.43496 -21.49616 -19.26718 -18.49832 -17.21617 -16.97560 -16.85887 -16.47051 -15.95870 -15.68541 -15.41486 -15.15861 -14.72569 -14.49550 -14.31962 -14.03348 -13.84659 -13.27364 -13.13655 -12.90728 -12.77369 -12.64601 -12.53134 -12.46557 -12.15104 -12.05142 -11.84808 -11.77869 -11.43769 -11.38749 -11.31416 -10.97046 -10.86860 -10.56855 -10.33841 -9.22430 -8.21033 -6.32900 1.39540 1.42992 1.50954 2.39912 3.02416 3.12178 3.34319 3.69042 3.82590 3.86109 4.14259 4.18119 4.21336 4.36043 4.37868 4.47577 4.52408 4.57083 4.62239 4.75396 4.80399 4.82992 4.87457 4.89661 4.93543 5.04371 5.06794 5.10395 5.14968 5.18221 5.20627 5.28795 5.41590 5.45117 5.54888 5.66715 5.69530 5.78399 6.14659 6.30025 6.32239 6.57170 6.84343 7.36449 8.90947 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.044966 B = 0.003486 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.547682 B = 8030.884856 C = 8368.068579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.131 4.131 4 C 0.069 3.931 5 N -0.692 5.692 6 C 0.084 3.916 7 C 0.033 3.967 8 C -0.548 4.548 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.072 4.072 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.405 6.405 20 C 0.057 3.943 21 C -0.148 4.148 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.337 0.663 31 H 0.015 0.985 32 H 0.055 0.945 33 H -0.007 1.007 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -4.421 -22.433 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.060 4.060 5 N -0.324 5.324 6 C -0.045 4.045 7 C -0.004 4.004 8 C -0.586 4.586 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.091 4.091 17 C -0.192 4.192 18 C -0.016 4.016 19 O -0.324 6.324 20 C -0.019 4.019 21 C -0.186 4.186 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.156 0.844 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.278 -3.754 -22.450 22.875 hybrid contribution -0.575 -1.025 1.463 1.876 sum 1.703 -4.779 -20.987 21.592 Atomic orbital electron populations 1.21932 0.94322 1.01772 1.02243 1.20457 0.95722 0.95751 0.92828 1.21795 1.00498 0.95223 1.01259 1.22083 0.99923 0.94531 0.89488 1.60550 1.16260 1.54052 1.01496 1.21756 0.98929 0.94461 0.89343 1.18898 0.94491 0.94957 0.92052 1.21602 1.31934 1.12784 0.92283 0.92208 1.25983 0.95111 0.95642 1.02975 1.70096 1.37593 1.23869 1.25587 0.85473 0.78947 0.78659 0.77790 1.19158 1.20735 1.19085 1.21133 0.94939 0.99275 0.93779 1.22344 0.96079 1.02290 0.98474 1.22652 0.99298 0.94851 0.84820 1.87891 1.21659 1.76310 1.46583 1.22724 0.80171 1.00478 0.98565 1.22313 1.01711 1.00507 0.94059 0.93338 0.90815 0.92658 0.93272 0.91977 0.93453 0.91497 0.95860 0.84444 0.96657 0.92652 0.98815 0.99163 0.92700 0.91029 0.91321 0.90836 0.92603 0.88302 0.92607 0.87851 0.89520 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 7.80 71.98 0.56 -2.46 16 2 C -0.05 -1.04 0.40 -52.18 -0.02 -1.06 16 3 C -0.13 -3.12 7.61 71.98 0.55 -2.57 16 4 C 0.07 1.91 4.30 86.30 0.37 2.28 16 5 N -0.69 -24.61 5.71 -513.89 -2.94 -27.54 16 6 C 0.08 3.62 5.62 86.30 0.49 4.10 16 7 C 0.03 1.82 5.23 29.85 0.16 1.98 16 8 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.06 5.46 84.66 0.46 0.52 16 11 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 12 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 C -0.07 -1.31 1.63 -10.68 -0.02 -1.33 16 17 C -0.15 -2.86 4.70 30.69 0.14 -2.72 16 18 C 0.06 1.02 6.84 72.01 0.49 1.51 16 19 O -0.41 -8.06 10.77 -148.98 -1.60 -9.66 16 20 C 0.06 0.86 6.84 72.01 0.49 1.35 16 21 C -0.15 -2.31 4.70 30.68 0.14 -2.16 16 22 H 0.05 1.16 6.57 -2.39 -0.02 1.15 16 23 H 0.07 1.26 6.51 -2.39 -0.02 1.25 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.20 6.37 -2.39 -0.02 1.18 16 26 H 0.06 1.27 6.36 -2.39 -0.02 1.25 16 27 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 28 H 0.07 1.89 6.52 -2.39 -0.02 1.88 16 29 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.34 11.78 6.77 -89.69 -0.61 11.18 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 33 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.41 6.28 -2.39 -0.01 1.39 16 38 H 0.07 1.39 6.63 -2.39 -0.02 1.38 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.14 6.62 -2.39 -0.02 1.13 16 44 H 0.07 1.21 6.28 -2.39 -0.01 1.19 16 Total: -1.00 -64.89 329.01 2.17 -62.71 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.35 Total: 17.21 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 4.05 Total: -32.11 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.65 Total: -84.78 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.60 Total: -9.66 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.89 2.17 -62.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258978205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.429 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds