Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.53007 * 109.47012 * 119.99668 * 2 1 3 5 5 N 1.46894 * 109.47401 * 175.00246 * 4 2 1 6 6 C 1.46894 * 110.99981 * 170.00152 * 5 4 2 7 7 C 1.50702 * 109.47038 * 286.28043 * 6 5 4 8 8 H 1.07997 * 119.99711 * 0.27893 * 7 6 5 9 9 C 1.37873 * 120.00060 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00177 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00219 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47032 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47340 * 119.99937 * 11 9 7 14 14 H 1.48496 * 109.47353 * 240.00029 * 11 9 7 15 15 C 1.46904 * 110.99616 * 293.95201 * 5 4 2 16 16 H 1.08998 * 110.01753 * 36.28441 * 15 5 4 17 17 C 1.54266 * 110.03381 * 274.84361 * 15 5 4 18 18 C 1.54892 * 104.19490 * 217.10601 * 17 15 5 19 19 C 1.54886 * 102.74802 * 37.94290 * 18 17 15 20 20 C 1.53878 * 110.03057 * 157.67647 * 15 5 4 21 21 C 1.52996 * 110.03084 * 0.02562 * 20 15 5 22 22 O 1.42904 * 110.03149 * 238.57035 * 20 15 5 23 23 H 1.08999 * 109.47230 * 300.00457 * 1 2 3 24 24 H 1.09008 * 109.46734 * 60.00239 * 1 2 3 25 25 H 1.08994 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47230 * 239.99543 * 2 1 3 27 27 H 1.08996 * 109.46844 * 299.99271 * 3 2 1 28 28 H 1.08999 * 109.47421 * 59.99659 * 3 2 1 29 29 H 1.09005 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46693 * 54.99529 * 4 2 1 31 31 H 1.09007 * 109.46989 * 295.00415 * 4 2 1 32 32 H 1.09007 * 109.47243 * 166.28683 * 6 5 4 33 33 H 1.08996 * 109.47807 * 46.28517 * 6 5 4 34 34 H 0.96992 * 120.00300 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.48391 * 335.78353 * 17 15 5 36 36 H 1.08994 * 110.48723 * 98.42731 * 17 15 5 37 37 H 1.09000 * 110.75596 * 279.62497 * 18 17 15 38 38 H 1.09003 * 110.91103 * 156.32753 * 18 17 15 39 39 H 1.08999 * 110.48261 * 203.37661 * 19 18 17 40 40 H 1.09006 * 110.59867 * 80.79290 * 19 18 17 41 41 H 1.08991 * 109.47707 * 69.44955 * 21 20 15 42 42 H 1.09008 * 109.46931 * 189.45193 * 21 20 15 43 43 H 1.09001 * 109.47404 * 309.44563 * 21 20 15 44 44 H 0.96701 * 113.99694 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0497 -1.2965 2.4710 7 6 3.9779 -0.1847 3.4858 8 1 3.5638 0.7734 3.2087 9 6 4.4362 -0.3925 4.7695 10 7 4.9355 -1.5611 5.1085 11 14 4.3466 0.9853 6.0277 12 1 3.7462 2.1900 5.4006 13 1 3.5073 0.5545 7.1746 14 1 5.7144 1.3064 6.5083 15 6 3.9250 -1.6997 0.0868 16 1 3.2610 -1.5676 -0.7675 17 6 3.9126 -3.1730 0.5440 18 6 5.1402 -3.8002 -0.1621 19 6 6.1920 -2.6654 -0.0912 20 6 5.3743 -1.3770 -0.3172 21 6 5.9232 -0.2483 0.5578 22 8 5.4261 -0.9995 -1.6945 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6768 1.9562 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6052 -1.7197 1.2953 31 1 1.7515 -0.1582 2.1371 32 1 5.0885 -1.5974 2.3347 33 1 3.4679 -2.1482 2.8233 34 1 5.2582 -1.7071 6.0114 35 1 4.0212 -3.2373 1.6267 36 1 2.9948 -3.6647 0.2219 37 1 4.9062 -4.0459 -1.1980 38 1 5.4881 -4.6834 0.3737 39 1 6.9376 -2.7868 -0.8770 40 1 6.6706 -2.6468 0.8879 41 1 6.0603 -0.6117 1.5761 42 1 6.8809 0.0871 0.1596 43 1 5.2195 0.5842 0.5608 44 1 6.3144 -0.7838 -2.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304528493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = -54.759012 kcal Electronic energy + Delta-G solvation = -21234.140287 eV Core-core repulsion = 18379.121314 eV Total energy + Delta-G solvation = -2855.018974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61755 -36.60050 -34.66010 -33.34484 -32.02931 -29.69978 -27.80998 -26.80168 -26.58696 -24.44257 -23.97119 -21.62833 -20.27953 -19.87087 -17.84637 -16.53301 -16.20545 -15.38697 -14.94177 -14.49282 -14.44159 -13.81472 -13.69042 -13.35273 -13.00423 -12.61565 -12.26731 -12.25016 -11.91141 -11.80259 -11.68061 -11.30662 -11.09593 -10.94240 -10.86136 -10.67465 -10.62103 -10.43466 -10.36655 -10.34729 -9.99088 -9.92039 -9.77196 -9.39248 -9.31588 -9.06496 -8.38425 -7.10381 -6.01505 -4.01721 3.30504 3.38750 3.43438 4.40909 4.54147 4.89679 5.06279 5.26291 5.33817 5.37098 5.42994 5.48507 5.71907 5.77172 5.89202 5.93523 5.98827 6.04809 6.12140 6.14734 6.19250 6.23798 6.30936 6.33448 6.47144 6.48360 6.49568 6.52935 6.61613 6.68859 6.76400 6.84111 6.92727 6.98273 7.23311 7.38848 7.48767 7.86000 8.12261 8.17213 8.27240 8.59680 9.07494 9.62521 11.08635 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.009082 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.472289 B = 3082.146382 C = 4030.952212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.132 4.132 4 C 0.069 3.931 5 N -0.520 5.520 6 C 0.187 3.813 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.091 3.909 16 H 0.081 0.919 17 C -0.166 4.166 18 C -0.115 4.115 19 C -0.150 4.150 20 C 0.137 3.863 21 C -0.165 4.165 22 O -0.564 6.564 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.041 0.959 33 H -0.007 1.007 34 H 0.259 0.741 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.028 0.972 43 H 0.080 0.920 44 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -0.477 -10.732 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.189 4.189 4 C -0.059 4.059 5 N -0.243 5.243 6 C 0.062 3.938 7 C -0.538 4.538 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.018 4.018 16 H 0.099 0.901 17 C -0.205 4.205 18 C -0.153 4.153 19 C -0.188 4.188 20 C 0.096 3.904 21 C -0.222 4.222 22 O -0.370 6.370 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.809 -0.181 -10.602 10.756 hybrid contribution 0.313 -0.161 0.957 1.020 sum -1.496 -0.342 -9.645 9.766 Atomic orbital electron populations 1.21811 0.96216 1.00994 1.01199 1.21191 0.94154 0.97366 0.98706 1.21655 1.02566 0.94952 0.99720 1.22027 0.88564 0.97625 0.97696 1.62208 1.08309 1.48494 1.05271 1.19955 0.95206 0.94687 0.83939 1.21218 1.39633 0.98686 0.94266 0.91887 1.24957 0.95693 0.95554 0.98387 1.69957 1.42282 1.22284 1.19400 0.86529 0.77586 0.82458 0.81379 1.19694 1.21293 1.21165 1.22127 0.94458 0.89832 0.95406 0.90129 1.23215 0.97466 0.96763 1.03041 1.22316 0.95830 0.97386 0.99811 1.23099 0.97760 0.95880 1.02013 1.21791 0.95309 0.92788 0.80511 1.22526 0.98675 0.99721 1.01259 1.86502 1.33590 1.90200 1.26663 0.92797 0.93296 0.93346 0.91803 0.94592 0.93332 0.91227 0.96480 0.90053 0.94088 0.98961 0.93118 0.88903 0.92614 0.92158 0.92157 0.92116 0.90532 0.89351 0.95338 0.90143 0.78708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 2 C -0.10 -1.53 2.86 -90.62 -0.26 -1.79 16 3 C -0.13 -2.12 9.08 37.16 0.34 -1.78 16 4 C 0.07 1.31 4.13 -3.82 -0.02 1.30 16 5 N -0.52 -10.53 2.28 -226.74 -0.52 -11.04 16 6 C 0.19 4.51 2.23 -4.98 -0.01 4.49 16 7 C -0.50 -13.31 8.50 -34.44 -0.29 -13.60 16 8 H 0.06 1.70 7.67 -52.49 -0.40 1.29 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 11 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.09 1.67 2.55 -66.59 -0.17 1.50 16 16 H 0.08 1.49 5.64 -51.93 -0.29 1.20 16 17 C -0.17 -2.94 5.87 -25.07 -0.15 -3.09 16 18 C -0.12 -1.79 6.91 -24.74 -0.17 -1.96 16 19 C -0.15 -2.36 5.98 -25.07 -0.15 -2.51 16 20 C 0.14 2.33 1.14 -89.50 -0.10 2.23 16 21 C -0.16 -3.05 7.61 37.16 0.28 -2.76 16 22 O -0.56 -8.92 12.90 -35.23 -0.45 -9.37 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.05 6.10 -51.93 -0.32 0.73 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.24 7.48 -51.93 -0.39 0.86 16 30 H 0.02 0.33 7.95 -51.93 -0.41 -0.09 16 31 H 0.08 1.70 7.24 -51.92 -0.38 1.32 16 32 H 0.04 1.05 5.00 -51.93 -0.26 0.79 16 33 H -0.01 -0.19 6.73 -51.93 -0.35 -0.54 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.09 1.91 5.04 -51.93 -0.26 1.64 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.82 8.06 -51.93 -0.42 0.41 16 40 H 0.08 1.31 7.63 -51.93 -0.40 0.91 16 41 H 0.09 1.90 5.02 -51.93 -0.26 1.64 16 42 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.08 1.62 7.08 -51.93 -0.37 1.25 16 44 H 0.37 4.31 9.07 45.56 0.41 4.73 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -28.03 328.14 -7.80 -35.83 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.03 Total: 6.61 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.45 Total: -18.19 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.22 Total: -36.11 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.45 Total: -9.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.03 -7.80 -35.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.929 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds