Wall clock time and date at job start Mon Mar 30 2020 07:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.53007 * 109.47012 * 119.99668 * 2 1 3 5 5 N 1.46894 * 109.47401 * 175.00246 * 4 2 1 6 6 C 1.46894 * 110.99981 * 170.00152 * 5 4 2 7 7 C 1.50702 * 109.47038 * 286.28043 * 6 5 4 8 8 H 1.07997 * 119.99711 * 0.27893 * 7 6 5 9 9 C 1.37873 * 120.00060 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00177 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00219 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47032 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47340 * 119.99937 * 11 9 7 14 14 H 1.48496 * 109.47353 * 240.00029 * 11 9 7 15 15 C 1.46904 * 110.99616 * 293.95201 * 5 4 2 16 16 H 1.08998 * 110.01753 * 36.28441 * 15 5 4 17 17 C 1.54266 * 110.03381 * 274.84361 * 15 5 4 18 18 C 1.54892 * 104.19490 * 217.10601 * 17 15 5 19 19 C 1.54886 * 102.74802 * 37.94290 * 18 17 15 20 20 C 1.53878 * 110.03057 * 157.67647 * 15 5 4 21 21 C 1.52996 * 110.03084 * 0.02562 * 20 15 5 22 22 O 1.42904 * 110.03149 * 238.57035 * 20 15 5 23 23 H 1.08999 * 109.47230 * 300.00457 * 1 2 3 24 24 H 1.09008 * 109.46734 * 60.00239 * 1 2 3 25 25 H 1.08994 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47230 * 239.99543 * 2 1 3 27 27 H 1.08996 * 109.46844 * 299.99271 * 3 2 1 28 28 H 1.08999 * 109.47421 * 59.99659 * 3 2 1 29 29 H 1.09005 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46693 * 54.99529 * 4 2 1 31 31 H 1.09007 * 109.46989 * 295.00415 * 4 2 1 32 32 H 1.09007 * 109.47243 * 166.28683 * 6 5 4 33 33 H 1.08996 * 109.47807 * 46.28517 * 6 5 4 34 34 H 0.96992 * 120.00300 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.48391 * 335.78353 * 17 15 5 36 36 H 1.08994 * 110.48723 * 98.42731 * 17 15 5 37 37 H 1.09000 * 110.75596 * 279.62497 * 18 17 15 38 38 H 1.09003 * 110.91103 * 156.32753 * 18 17 15 39 39 H 1.08999 * 110.48261 * 203.37661 * 19 18 17 40 40 H 1.09006 * 110.59867 * 80.79290 * 19 18 17 41 41 H 1.08991 * 109.47707 * 69.44955 * 21 20 15 42 42 H 1.09008 * 109.46931 * 189.45193 * 21 20 15 43 43 H 1.09001 * 109.47404 * 309.44563 * 21 20 15 44 44 H 0.96701 * 113.99694 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0497 -1.2965 2.4710 7 6 3.9779 -0.1847 3.4858 8 1 3.5638 0.7734 3.2087 9 6 4.4362 -0.3925 4.7695 10 7 4.9355 -1.5611 5.1085 11 14 4.3466 0.9853 6.0277 12 1 3.7462 2.1900 5.4006 13 1 3.5073 0.5545 7.1746 14 1 5.7144 1.3064 6.5083 15 6 3.9250 -1.6997 0.0868 16 1 3.2610 -1.5676 -0.7675 17 6 3.9126 -3.1730 0.5440 18 6 5.1402 -3.8002 -0.1621 19 6 6.1920 -2.6654 -0.0912 20 6 5.3743 -1.3770 -0.3172 21 6 5.9232 -0.2483 0.5578 22 8 5.4261 -0.9995 -1.6945 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6768 1.9562 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6052 -1.7197 1.2953 31 1 1.7515 -0.1582 2.1371 32 1 5.0885 -1.5974 2.3347 33 1 3.4679 -2.1482 2.8233 34 1 5.2582 -1.7071 6.0114 35 1 4.0212 -3.2373 1.6267 36 1 2.9948 -3.6647 0.2219 37 1 4.9062 -4.0459 -1.1980 38 1 5.4881 -4.6834 0.3737 39 1 6.9376 -2.7868 -0.8770 40 1 6.6706 -2.6468 0.8879 41 1 6.0603 -0.6117 1.5761 42 1 6.8809 0.0871 0.1596 43 1 5.2195 0.5842 0.5608 44 1 6.3144 -0.7838 -2.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304528493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:35 Heat of formation + Delta-G solvation = -71.881881 kcal Electronic energy + Delta-G solvation = -21234.882791 eV Core-core repulsion = 18379.121314 eV Total energy + Delta-G solvation = -2855.761477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08834 -38.01971 -36.00912 -35.10765 -33.78233 -31.13109 -29.60491 -28.28536 -27.86257 -25.89885 -25.79401 -23.26146 -21.71054 -21.24867 -19.33867 -18.48949 -17.68985 -16.79660 -16.56915 -16.29476 -15.74939 -15.41055 -15.12632 -14.87290 -14.46126 -14.12264 -13.94528 -13.69674 -13.37841 -13.23989 -13.02273 -12.83262 -12.71514 -12.61966 -12.53657 -12.26206 -12.02692 -11.95207 -11.85427 -11.71455 -11.59879 -11.40478 -11.32893 -11.06653 -10.90043 -10.62757 -10.48936 -8.80648 -8.13631 -6.20968 1.39087 1.41200 1.53117 2.42277 3.11901 3.18876 3.46011 3.72607 3.90109 4.00902 4.11503 4.21054 4.35740 4.40023 4.48070 4.51007 4.64749 4.72795 4.78251 4.87128 4.89623 4.92923 4.98648 5.01418 5.06176 5.11499 5.12044 5.17823 5.18789 5.27224 5.31437 5.37581 5.44649 5.51779 5.57561 5.62538 5.73613 5.85181 6.19146 6.50131 6.76247 6.96042 7.03506 7.47612 8.95892 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.009082 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.472289 B = 3082.146382 C = 4030.952212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.127 4.127 4 C 0.070 3.930 5 N -0.519 5.519 6 C 0.211 3.789 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.087 3.913 16 H 0.086 0.914 17 C -0.166 4.166 18 C -0.109 4.109 19 C -0.146 4.146 20 C 0.143 3.857 21 C -0.155 4.155 22 O -0.566 6.566 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.012 0.988 31 H 0.056 0.944 32 H 0.027 0.973 33 H -0.041 1.041 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 0.055 -12.583 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.184 4.184 4 C -0.058 4.058 5 N -0.241 5.241 6 C 0.085 3.915 7 C -0.546 4.546 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.206 1.206 15 C -0.022 4.022 16 H 0.104 0.896 17 C -0.205 4.205 18 C -0.146 4.146 19 C -0.184 4.184 20 C 0.102 3.898 21 C -0.213 4.213 22 O -0.374 6.374 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.045 0.955 33 H -0.023 1.023 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.939 0.360 -12.476 12.631 hybrid contribution 0.355 -0.323 1.478 1.554 sum -1.584 0.037 -10.998 11.112 Atomic orbital electron populations 1.21768 0.93977 1.01753 1.02209 1.21125 0.95947 0.96805 0.96691 1.21595 1.01094 0.95130 1.00583 1.22038 0.87850 0.97400 0.98523 1.62155 1.09078 1.48835 1.04079 1.19535 0.93943 0.92662 0.85324 1.21476 1.39062 0.98913 0.95162 0.92612 1.25726 0.95447 0.97729 1.00325 1.70073 1.43258 1.24080 1.19879 0.85543 0.77682 0.79778 0.78890 1.19085 1.20913 1.20640 1.22230 0.95629 0.89808 0.94526 0.89606 1.23128 0.99379 0.96934 1.01016 1.22315 0.94289 0.97345 1.00697 1.23051 0.98253 0.95123 1.01972 1.21578 0.94377 0.92807 0.81056 1.22361 0.99585 0.99520 0.99819 1.86458 1.35563 1.90185 1.25217 0.92990 0.91064 0.92780 0.91585 0.92089 0.94049 0.93423 0.96988 0.92590 0.95530 1.02347 0.93037 0.92461 0.91589 0.90055 0.91389 0.89044 0.92594 0.92883 0.92810 0.92149 0.76352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.19 71.98 0.66 -2.87 16 2 C -0.09 -2.70 2.86 -10.79 -0.03 -2.73 16 3 C -0.13 -3.95 9.08 71.98 0.65 -3.29 16 4 C 0.07 2.72 4.13 86.31 0.36 3.08 16 5 N -0.52 -21.65 2.28 -871.27 -1.99 -23.64 16 6 C 0.21 10.71 2.23 85.56 0.19 10.90 16 7 C -0.51 -28.08 8.50 25.60 0.22 -27.86 16 8 H 0.06 3.10 7.67 -2.91 -0.02 3.08 16 9 C 0.01 0.30 5.46 84.65 0.46 0.77 16 10 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 11 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.09 3.18 2.55 45.64 0.12 3.30 16 16 H 0.09 3.05 5.64 -2.39 -0.01 3.04 16 17 C -0.17 -5.89 5.87 31.67 0.19 -5.71 16 18 C -0.11 -3.19 6.91 31.89 0.22 -2.97 16 19 C -0.15 -4.38 5.98 31.67 0.19 -4.20 16 20 C 0.14 4.71 1.14 -10.07 -0.01 4.70 16 21 C -0.16 -5.76 7.61 71.98 0.55 -5.21 16 22 O -0.57 -16.26 12.90 -148.98 -1.92 -18.18 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 2.05 6.10 -2.39 -0.01 2.03 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.68 7.48 -2.38 -0.02 1.66 16 30 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 31 H 0.06 2.43 7.24 -2.38 -0.02 2.42 16 32 H 0.03 1.44 5.00 -2.38 -0.01 1.43 16 33 H -0.04 -2.32 6.73 -2.39 -0.02 -2.34 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.06 2.47 5.04 -2.39 -0.01 2.45 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 40 H 0.06 1.91 7.63 -2.38 -0.02 1.90 16 41 H 0.05 2.35 5.02 -2.39 -0.01 2.34 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 2.46 7.08 -2.39 -0.02 2.44 16 44 H 0.39 7.70 9.07 -74.06 -0.67 7.03 16 Total: -1.00 -61.77 328.14 2.45 -59.32 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.29 Total: 22.96 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.76 Total: -32.09 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.70 Total: -78.48 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.92 Total: -18.18 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.77 2.45 -59.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.562 kcal (2) G-P(sol) polarization free energy of solvation -61.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds