Wall clock time and date at job start Mon Mar 30 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46860 * 2 1 4 4 C 1.52995 * 109.47316 * 120.00361 * 2 1 3 5 5 N 1.46894 * 109.47250 * 177.38043 * 4 2 1 6 6 C 1.46907 * 111.00038 * 159.90774 * 5 4 2 7 7 C 1.50697 * 109.47217 * 286.98495 * 6 5 4 8 8 H 1.08003 * 119.99843 * 354.87763 * 7 6 5 9 9 C 1.37878 * 120.00188 * 174.88473 * 7 6 5 10 10 N 1.31509 * 119.99720 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99983 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46867 * 60.00462 * 11 9 7 13 13 H 1.48503 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47508 * 300.00140 * 11 9 7 15 15 C 1.46901 * 111.00026 * 283.85878 * 5 4 2 16 16 H 1.09000 * 110.42934 * 38.68578 * 15 5 4 17 17 C 1.54882 * 110.48990 * 276.00308 * 15 5 4 18 18 C 1.54891 * 102.75223 * 203.37735 * 17 15 5 19 19 C 1.54382 * 104.21140 * 37.92615 * 18 17 15 20 20 C 1.53872 * 106.54548 * 336.42268 * 19 18 17 21 21 C 1.52995 * 110.03566 * 240.65402 * 20 19 18 22 22 O 1.42900 * 110.02802 * 119.27061 * 20 19 18 23 23 H 1.08997 * 109.46836 * 299.99683 * 1 2 3 24 24 H 1.08994 * 109.47234 * 59.99874 * 1 2 3 25 25 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46836 * 240.00317 * 2 1 3 27 27 H 1.08999 * 109.47672 * 304.75549 * 3 2 1 28 28 H 1.09003 * 109.47136 * 64.76032 * 3 2 1 29 29 H 1.09000 * 109.46911 * 184.75380 * 3 2 1 30 30 H 1.09001 * 109.47312 * 57.37589 * 4 2 1 31 31 H 1.09001 * 109.47341 * 297.38179 * 4 2 1 32 32 H 1.09004 * 109.47052 * 46.98409 * 6 5 4 33 33 H 1.09005 * 109.46986 * 166.98150 * 6 5 4 34 34 H 0.97006 * 120.00109 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.75695 * 321.69445 * 17 15 5 36 36 H 1.09003 * 110.75378 * 84.87984 * 17 15 5 37 37 H 1.08995 * 110.49131 * 156.61633 * 18 17 15 38 38 H 1.08998 * 110.48797 * 279.13806 * 18 17 15 39 39 H 1.09000 * 110.06824 * 217.15148 * 19 18 17 40 40 H 1.08994 * 110.04736 * 95.68941 * 19 18 17 41 41 H 1.08999 * 109.47057 * 297.91360 * 21 20 19 42 42 H 1.08998 * 109.47018 * 57.91169 * 21 20 19 43 43 H 1.08994 * 109.47126 * 177.91111 * 21 20 19 44 44 H 0.96699 * 114.00176 * 62.09751 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5076 -0.7763 1.2179 6 6 4.0544 -1.0119 2.5609 7 6 3.9113 0.2396 3.3882 8 1 3.5360 1.1458 2.9360 9 6 4.2595 0.2278 4.7222 10 7 4.7161 -0.8758 5.2728 11 14 4.0828 1.7793 5.7474 12 1 2.6618 2.2107 5.7514 13 1 4.5214 1.5053 7.1395 14 1 4.9252 2.8553 5.1662 15 6 3.9761 -1.7982 0.2722 16 1 3.3482 -1.8085 -0.6187 17 6 3.9908 -3.1933 0.9447 18 6 5.0256 -3.9717 0.0947 19 6 6.1178 -2.9277 -0.2224 20 6 5.4497 -1.5463 -0.1088 21 6 5.5265 -0.8149 -1.4504 22 8 6.0926 -0.7737 0.9070 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6088 1.9804 -0.8443 28 1 1.7479 1.9311 0.9296 29 1 3.1266 1.4437 -0.0852 30 1 1.6389 -1.7345 1.2730 31 1 1.7156 -0.1812 2.1386 32 1 3.5091 -1.8267 3.0374 33 1 5.1087 -1.2772 2.4826 34 1 4.9615 -0.8841 6.2113 35 1 4.3198 -3.1190 1.9812 36 1 3.0080 -3.6610 0.8855 37 1 5.4439 -4.7997 0.6670 38 1 4.5670 -4.3373 -0.8240 39 1 6.4960 -3.0775 -1.2336 40 1 6.9324 -3.0089 0.4972 41 1 6.5710 -0.6527 -1.7164 42 1 5.0448 -1.4172 -2.2206 43 1 5.0186 0.1461 -1.3700 44 1 7.0255 -0.5906 0.7306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304528496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:38 Heat of formation + Delta-G solvation = -59.238001 kcal Electronic energy + Delta-G solvation = -21177.477869 eV Core-core repulsion = 18322.264672 eV Total energy + Delta-G solvation = -2855.213197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37884 -36.44149 -34.29338 -33.44025 -31.94568 -29.92512 -27.60292 -26.68257 -26.52191 -24.89227 -23.53155 -21.61541 -20.12922 -19.57819 -18.36108 -16.51024 -15.73175 -15.30429 -14.50846 -14.43872 -14.30584 -13.84633 -13.66143 -13.48663 -13.01601 -12.80357 -12.20245 -12.08861 -12.07492 -11.76900 -11.69761 -11.27493 -10.95365 -10.90954 -10.84727 -10.73142 -10.60395 -10.47410 -10.38909 -10.32230 -10.13096 -9.86157 -9.70683 -9.38393 -9.21856 -8.81908 -8.16737 -6.89812 -5.82129 -3.79074 3.43144 3.46694 3.50245 4.56080 4.75775 4.90983 4.97978 5.17869 5.34742 5.43322 5.50748 5.53753 5.56093 5.65385 5.77804 5.82779 5.87014 5.92491 6.04755 6.08939 6.14672 6.18800 6.19765 6.24083 6.34860 6.38328 6.43538 6.52456 6.56865 6.62981 6.67246 6.74488 6.85747 7.01302 7.06125 7.59559 7.74849 8.03783 8.32307 8.48065 8.63276 8.84532 9.29102 9.81868 11.28498 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.009090 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.383697 B = 3079.680056 C = 4036.952417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.063 3.937 5 N -0.509 5.509 6 C 0.193 3.807 7 C -0.486 4.486 8 H 0.058 0.942 9 C 0.051 3.949 10 N -0.904 5.904 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.096 3.904 16 H 0.075 0.925 17 C -0.165 4.165 18 C -0.117 4.117 19 C -0.152 4.152 20 C 0.133 3.867 21 C -0.167 4.167 22 O -0.509 6.509 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.080 0.920 32 H -0.015 1.015 33 H 0.063 0.937 34 H 0.257 0.743 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -2.824 -13.119 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.187 4.187 4 C -0.066 4.066 5 N -0.231 5.231 6 C 0.069 3.931 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.148 4.148 10 N -0.545 5.545 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.217 1.217 14 H -0.204 1.204 15 C -0.014 4.014 16 H 0.093 0.907 17 C -0.204 4.204 18 C -0.155 4.155 19 C -0.190 4.190 20 C 0.091 3.909 21 C -0.224 4.224 22 O -0.312 6.312 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.002 0.998 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.456 -2.436 -12.819 13.130 hybrid contribution 0.183 -0.071 0.632 0.661 sum -1.273 -2.507 -12.188 12.508 Atomic orbital electron populations 1.21823 0.96404 1.00882 1.01190 1.21104 0.93903 0.97356 0.98492 1.21632 1.02287 0.94869 0.99941 1.22093 0.89603 0.97163 0.97713 1.62081 1.05883 1.43772 1.11346 1.19941 0.96407 0.95208 0.81549 1.21167 1.41017 0.96989 0.93389 0.92414 1.24920 0.96199 0.95813 0.97871 1.69951 1.45580 1.26510 1.12425 0.86699 0.78216 0.84060 0.79164 1.20631 1.21684 1.20436 1.22521 0.92900 0.89706 0.96259 0.90699 1.23311 0.98182 0.96920 1.01973 1.22185 0.96590 0.97457 0.99242 1.22978 0.98877 0.96139 1.01015 1.21746 0.93148 0.88643 0.87317 1.22442 1.01158 1.01756 0.97091 1.87181 1.25833 1.74039 1.44114 0.92743 0.93403 0.93442 0.92547 0.94903 0.93079 0.91307 0.96763 0.90108 0.99771 0.91932 0.93366 0.89026 0.92625 0.92195 0.92439 0.92135 0.91090 0.93255 0.92747 0.91379 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.19 37.16 0.34 -1.67 16 2 C -0.09 -1.45 2.96 -90.62 -0.27 -1.71 16 3 C -0.13 -2.16 9.00 37.16 0.33 -1.82 16 4 C 0.06 1.23 4.16 -3.83 -0.02 1.22 16 5 N -0.51 -10.75 3.46 -226.10 -0.78 -11.54 16 6 C 0.19 5.01 2.65 -4.97 -0.01 4.99 16 7 C -0.49 -13.86 8.35 -34.44 -0.29 -14.15 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 11 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.10 1.72 2.24 -66.06 -0.15 1.58 16 16 H 0.07 1.24 6.27 -51.93 -0.33 0.92 16 17 C -0.16 -2.92 5.69 -24.74 -0.14 -3.06 16 18 C -0.12 -1.68 6.83 -25.01 -0.17 -1.85 16 19 C -0.15 -2.16 6.27 -25.55 -0.16 -2.32 16 20 C 0.13 2.16 1.25 -89.50 -0.11 2.05 16 21 C -0.17 -2.28 8.48 37.16 0.32 -1.96 16 22 O -0.51 -9.78 9.31 -35.23 -0.33 -10.11 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.26 7.82 -51.93 -0.41 0.85 16 30 H 0.01 0.28 7.74 -51.93 -0.40 -0.13 16 31 H 0.08 1.80 7.17 -51.93 -0.37 1.43 16 32 H -0.02 -0.44 7.00 -51.93 -0.36 -0.80 16 33 H 0.06 1.74 5.12 -51.93 -0.27 1.47 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.96 5.54 -51.93 -0.29 1.67 16 36 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 40 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.35 5.27 9.07 45.56 0.41 5.69 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -30.64 333.24 -8.16 -38.81 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.37 Total: 4.47 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.42 Total: -17.32 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.05 Total: -38.21 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.33 Total: -10.11 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.64 -8.16 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.432 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds