Wall clock time and date at job start Mon Mar 30 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46860 * 2 1 4 4 C 1.52995 * 109.47316 * 120.00361 * 2 1 3 5 5 N 1.46894 * 109.47250 * 177.38043 * 4 2 1 6 6 C 1.46907 * 111.00038 * 159.90774 * 5 4 2 7 7 C 1.50697 * 109.47217 * 286.98495 * 6 5 4 8 8 H 1.08003 * 119.99843 * 354.87763 * 7 6 5 9 9 C 1.37878 * 120.00188 * 174.88473 * 7 6 5 10 10 N 1.31509 * 119.99720 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99983 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46867 * 60.00462 * 11 9 7 13 13 H 1.48503 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47508 * 300.00140 * 11 9 7 15 15 C 1.46901 * 111.00026 * 283.85878 * 5 4 2 16 16 H 1.09000 * 110.42934 * 38.68578 * 15 5 4 17 17 C 1.54882 * 110.48990 * 276.00308 * 15 5 4 18 18 C 1.54891 * 102.75223 * 203.37735 * 17 15 5 19 19 C 1.54382 * 104.21140 * 37.92615 * 18 17 15 20 20 C 1.53872 * 106.54548 * 336.42268 * 19 18 17 21 21 C 1.52995 * 110.03566 * 240.65402 * 20 19 18 22 22 O 1.42900 * 110.02802 * 119.27061 * 20 19 18 23 23 H 1.08997 * 109.46836 * 299.99683 * 1 2 3 24 24 H 1.08994 * 109.47234 * 59.99874 * 1 2 3 25 25 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46836 * 240.00317 * 2 1 3 27 27 H 1.08999 * 109.47672 * 304.75549 * 3 2 1 28 28 H 1.09003 * 109.47136 * 64.76032 * 3 2 1 29 29 H 1.09000 * 109.46911 * 184.75380 * 3 2 1 30 30 H 1.09001 * 109.47312 * 57.37589 * 4 2 1 31 31 H 1.09001 * 109.47341 * 297.38179 * 4 2 1 32 32 H 1.09004 * 109.47052 * 46.98409 * 6 5 4 33 33 H 1.09005 * 109.46986 * 166.98150 * 6 5 4 34 34 H 0.97006 * 120.00109 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.75695 * 321.69445 * 17 15 5 36 36 H 1.09003 * 110.75378 * 84.87984 * 17 15 5 37 37 H 1.08995 * 110.49131 * 156.61633 * 18 17 15 38 38 H 1.08998 * 110.48797 * 279.13806 * 18 17 15 39 39 H 1.09000 * 110.06824 * 217.15148 * 19 18 17 40 40 H 1.08994 * 110.04736 * 95.68941 * 19 18 17 41 41 H 1.08999 * 109.47057 * 297.91360 * 21 20 19 42 42 H 1.08998 * 109.47018 * 57.91169 * 21 20 19 43 43 H 1.08994 * 109.47126 * 177.91111 * 21 20 19 44 44 H 0.96699 * 114.00176 * 62.09751 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5076 -0.7763 1.2179 6 6 4.0544 -1.0119 2.5609 7 6 3.9113 0.2396 3.3882 8 1 3.5360 1.1458 2.9360 9 6 4.2595 0.2278 4.7222 10 7 4.7161 -0.8758 5.2728 11 14 4.0828 1.7793 5.7474 12 1 2.6618 2.2107 5.7514 13 1 4.5214 1.5053 7.1395 14 1 4.9252 2.8553 5.1662 15 6 3.9761 -1.7982 0.2722 16 1 3.3482 -1.8085 -0.6187 17 6 3.9908 -3.1933 0.9447 18 6 5.0256 -3.9717 0.0947 19 6 6.1178 -2.9277 -0.2224 20 6 5.4497 -1.5463 -0.1088 21 6 5.5265 -0.8149 -1.4504 22 8 6.0926 -0.7737 0.9070 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6088 1.9804 -0.8443 28 1 1.7479 1.9311 0.9296 29 1 3.1266 1.4437 -0.0852 30 1 1.6389 -1.7345 1.2730 31 1 1.7156 -0.1812 2.1386 32 1 3.5091 -1.8267 3.0374 33 1 5.1087 -1.2772 2.4826 34 1 4.9615 -0.8841 6.2113 35 1 4.3198 -3.1190 1.9812 36 1 3.0080 -3.6610 0.8855 37 1 5.4439 -4.7997 0.6670 38 1 4.5670 -4.3373 -0.8240 39 1 6.4960 -3.0775 -1.2336 40 1 6.9324 -3.0089 0.4972 41 1 6.5710 -0.6527 -1.7164 42 1 5.0448 -1.4172 -2.2206 43 1 5.0186 0.1461 -1.3700 44 1 7.0255 -0.5906 0.7306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304528496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:38 Heat of formation + Delta-G solvation = -79.434971 kcal Electronic energy + Delta-G solvation = -21178.353675 eV Core-core repulsion = 18322.264672 eV Total energy + Delta-G solvation = -2856.089004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79522 -37.90262 -35.69956 -35.21954 -33.85317 -31.14688 -29.39370 -28.22985 -27.83979 -26.26870 -25.28693 -23.26656 -21.52003 -20.92150 -19.88759 -18.44451 -17.39231 -16.89234 -16.29172 -15.83096 -15.69460 -15.37470 -15.07090 -14.82778 -14.53303 -14.17905 -14.01374 -13.51451 -13.39375 -13.24020 -12.98633 -12.81008 -12.71950 -12.60405 -12.34986 -12.18386 -12.10357 -11.96598 -11.80748 -11.70829 -11.61259 -11.51964 -11.28685 -11.04042 -10.78766 -10.56812 -10.32107 -8.65270 -8.06369 -6.12026 1.38940 1.42207 1.49515 2.45548 3.23711 3.32116 3.60671 3.72335 3.87760 4.02407 4.15082 4.24923 4.37755 4.42981 4.46484 4.54434 4.56922 4.69487 4.78700 4.90129 4.91553 4.94650 4.95949 5.04795 5.08089 5.13097 5.15973 5.18091 5.21539 5.30607 5.35704 5.39054 5.50602 5.53586 5.59484 5.68994 5.75222 5.87181 6.31623 6.66016 6.86860 7.06184 7.29520 7.54342 9.02942 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.009090 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.383697 B = 3079.680056 C = 4036.952417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.064 3.936 5 N -0.511 5.511 6 C 0.219 3.781 7 C -0.499 4.499 8 H 0.050 0.950 9 C -0.002 4.002 10 N -0.938 5.938 11 Si 0.956 3.044 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.088 3.912 16 H 0.097 0.903 17 C -0.166 4.166 18 C -0.109 4.109 19 C -0.146 4.146 20 C 0.126 3.874 21 C -0.158 4.158 22 O -0.547 6.547 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.044 0.956 32 H -0.056 1.056 33 H 0.043 0.957 34 H 0.258 0.742 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -2.474 -15.719 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.182 4.182 4 C -0.064 4.064 5 N -0.232 5.232 6 C 0.094 3.906 7 C -0.538 4.538 8 H 0.068 0.932 9 C -0.198 4.198 10 N -0.580 5.580 11 Si 0.782 3.218 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.021 4.021 16 H 0.115 0.885 17 C -0.205 4.205 18 C -0.147 4.147 19 C -0.184 4.184 20 C 0.085 3.915 21 C -0.215 4.215 22 O -0.353 6.353 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.063 0.937 32 H -0.039 1.039 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.758 -2.084 -15.446 15.684 hybrid contribution 0.265 -0.219 1.421 1.462 sum -1.492 -2.303 -14.025 14.291 Atomic orbital electron populations 1.21783 0.94222 1.01773 1.02033 1.21044 0.95634 0.96562 0.96706 1.21564 1.01021 0.95385 1.00193 1.22099 0.88846 0.97075 0.98400 1.61982 1.06666 1.45372 1.09215 1.19451 0.94889 0.92668 0.83620 1.21474 1.40615 0.97549 0.94181 0.93177 1.25759 0.95866 0.99037 0.99164 1.70093 1.46548 1.28627 1.12710 0.85643 0.78538 0.80131 0.77489 1.19775 1.21064 1.19674 1.22773 0.94772 0.88699 0.95864 0.88503 1.23204 0.99435 0.97989 0.99877 1.22192 0.95637 0.97157 0.99741 1.22931 0.98226 0.94522 1.02672 1.21936 0.91739 0.89909 0.87900 1.22342 1.02602 1.00765 0.95789 1.87092 1.27240 1.74810 1.46152 0.93623 0.90823 0.92597 0.90975 0.91827 0.95057 0.93437 0.96932 0.93732 1.03866 0.93917 0.93342 0.93860 0.92293 0.91940 0.89400 0.88716 0.92200 0.91272 0.90423 0.93133 0.78851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.19 71.98 0.66 -2.91 16 2 C -0.08 -2.49 2.96 -10.80 -0.03 -2.53 16 3 C -0.12 -4.00 9.00 71.98 0.65 -3.35 16 4 C 0.06 2.59 4.16 86.30 0.36 2.95 16 5 N -0.51 -22.26 3.46 -869.24 -3.01 -25.27 16 6 C 0.22 12.05 2.65 85.55 0.23 12.28 16 7 C -0.50 -29.72 8.35 25.60 0.21 -29.51 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 10 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 11 Si 0.96 46.92 29.54 68.60 2.03 48.95 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.09 3.13 2.24 45.99 0.10 3.23 16 16 H 0.10 2.99 6.27 -2.39 -0.01 2.97 16 17 C -0.17 -5.97 5.69 31.88 0.18 -5.79 16 18 C -0.11 -2.95 6.83 31.71 0.22 -2.74 16 19 C -0.15 -3.81 6.27 31.36 0.20 -3.62 16 20 C 0.13 3.94 1.25 -10.07 -0.01 3.93 16 21 C -0.16 -3.84 8.48 71.98 0.61 -3.23 16 22 O -0.55 -21.44 9.31 -148.98 -1.39 -22.83 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 2.03 6.76 -2.39 -0.02 2.02 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.72 7.82 -2.39 -0.02 1.70 16 30 H 0.01 0.50 7.74 -2.39 -0.02 0.48 16 31 H 0.04 2.09 7.17 -2.39 -0.02 2.07 16 32 H -0.06 -3.47 7.00 -2.39 -0.02 -3.48 16 33 H 0.04 2.53 5.12 -2.38 -0.01 2.52 16 34 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 35 H 0.04 1.98 5.54 -2.39 -0.01 1.96 16 36 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 1.86 7.67 -2.39 -0.02 1.84 16 40 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.36 11.13 9.07 -74.06 -0.67 10.46 16 Total: -1.00 -69.95 333.24 2.03 -67.93 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.28 Total: 20.97 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.84 Total: -30.93 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.72 Total: -84.08 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -1.39 Total: -22.83 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -69.95 2.03 -67.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.510 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds