Wall clock time and date at job start Mon Mar 30 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47244 * 2 1 4 4 C 1.53001 * 109.47176 * 120.00531 * 2 1 3 5 5 N 1.46897 * 109.46737 * 173.00759 * 4 2 1 6 6 C 1.46905 * 110.99616 * 165.73124 * 5 4 2 7 7 C 1.50704 * 109.46950 * 194.77252 * 6 5 4 8 8 H 1.08001 * 120.00300 * 355.23973 * 7 6 5 9 9 C 1.37880 * 119.99879 * 175.23475 * 7 6 5 10 10 N 1.31514 * 119.99845 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99828 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47011 * 60.00528 * 11 9 7 13 13 H 1.48499 * 109.46854 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47105 * 300.00313 * 11 9 7 15 15 C 1.46901 * 111.00409 * 289.68385 * 5 4 2 16 16 H 1.08997 * 110.01769 * 221.35248 * 15 5 4 17 17 C 1.54264 * 110.02686 * 342.74406 * 15 5 4 18 18 C 1.54893 * 104.19606 * 142.89430 * 17 15 5 19 19 C 1.54889 * 102.74509 * 322.05770 * 18 17 15 20 20 C 1.53876 * 110.03058 * 99.90789 * 15 5 4 21 21 C 1.52996 * 110.02899 * 121.43530 * 20 15 5 22 22 O 1.42895 * 110.03380 * 0.02562 * 20 15 5 23 23 H 1.09004 * 109.46512 * 299.99780 * 1 2 3 24 24 H 1.08996 * 109.47613 * 59.99441 * 1 2 3 25 25 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46512 * 240.00220 * 2 1 3 27 27 H 1.08999 * 109.47596 * 177.56277 * 3 2 1 28 28 H 1.09003 * 109.47379 * 297.57046 * 3 2 1 29 29 H 1.09004 * 109.47513 * 57.56467 * 3 2 1 30 30 H 1.09000 * 109.47152 * 53.00598 * 4 2 1 31 31 H 1.08998 * 109.46722 * 293.00737 * 4 2 1 32 32 H 1.08996 * 109.47295 * 314.77029 * 6 5 4 33 33 H 1.08997 * 109.47318 * 74.77640 * 6 5 4 34 34 H 0.97000 * 119.99296 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.48745 * 261.57056 * 17 15 5 36 36 H 1.08999 * 110.49039 * 24.21593 * 17 15 5 37 37 H 1.09003 * 110.75629 * 80.36937 * 18 17 15 38 38 H 1.08996 * 110.75979 * 203.55770 * 18 17 15 39 39 H 1.09000 * 110.48789 * 156.61929 * 19 18 17 40 40 H 1.08998 * 110.48852 * 279.12850 * 19 18 17 41 41 H 1.09001 * 109.47342 * 59.99738 * 21 20 15 42 42 H 1.08999 * 109.47383 * 179.97438 * 21 20 15 43 43 H 1.09005 * 109.47354 * 299.99556 * 21 20 15 44 44 H 0.96696 * 114.00035 * 184.90433 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.4993 -0.8690 1.1677 6 6 4.0642 -1.2420 2.4715 7 6 5.5566 -1.0332 2.4506 8 1 6.0473 -0.7345 1.5361 9 6 6.2954 -1.2233 3.5991 10 7 5.6978 -1.5874 4.7127 11 14 8.1451 -0.9638 3.5734 12 1 8.4429 0.4377 3.1833 13 1 8.7012 -1.2309 4.9242 14 1 8.7616 -1.8925 2.5922 15 6 3.8731 -1.8435 0.1339 16 1 4.6863 -2.4744 0.4925 17 6 2.6542 -2.7129 -0.2380 18 6 2.7950 -2.9312 -1.7649 19 6 3.3247 -1.5619 -2.2585 20 6 4.2994 -1.1116 -1.1508 21 6 5.7317 -1.4989 -1.5237 22 8 4.2076 0.3019 -0.9623 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1292 1.4428 0.0437 28 1 1.7127 1.9436 -0.9110 29 1 1.6415 1.9688 0.8674 30 1 1.5782 -1.7065 1.3139 31 1 1.7825 -0.1404 2.1347 32 1 3.6214 -0.6212 3.2504 33 1 3.8469 -2.2905 2.6752 34 1 6.2178 -1.7216 5.5205 35 1 2.6909 -3.6665 0.2887 36 1 1.7269 -2.1865 -0.0118 37 1 3.5137 -3.7227 -1.9773 38 1 1.8281 -3.1589 -2.2135 39 1 3.8508 -1.6755 -3.2063 40 1 2.5055 -0.8503 -2.3609 41 1 5.7858 -2.5749 -1.6896 42 1 6.0241 -0.9762 -2.4344 43 1 6.4058 -1.2219 -0.7131 44 1 4.3911 0.8177 -1.7593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304528500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:40 Heat of formation + Delta-G solvation = -54.117546 kcal Electronic energy + Delta-G solvation = -21539.705059 eV Core-core repulsion = 18684.713901 eV Total energy + Delta-G solvation = -2854.991158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25549 -37.54998 -35.72226 -35.40679 -33.97436 -30.89608 -29.46744 -28.23875 -27.71266 -26.53723 -25.48138 -23.04856 -21.41877 -20.86729 -20.02079 -18.38471 -17.49918 -16.98369 -16.51827 -16.22461 -15.42076 -15.28595 -15.00832 -14.71193 -14.41614 -14.22237 -13.85595 -13.63347 -13.36498 -13.18011 -12.97936 -12.87442 -12.74005 -12.61454 -12.30545 -12.21329 -12.10192 -11.89057 -11.86493 -11.56959 -11.47032 -11.29608 -10.98925 -10.93519 -10.81774 -10.57059 -10.34228 -8.65741 -8.16183 -6.25512 1.37213 1.41190 1.48881 2.40307 3.13318 3.28134 3.66582 3.80780 3.81986 4.08598 4.18191 4.32964 4.38525 4.47187 4.52291 4.55509 4.68884 4.73088 4.79154 4.82196 4.94649 4.99010 5.01464 5.06815 5.10543 5.16784 5.18845 5.21171 5.25211 5.29981 5.38570 5.39834 5.42800 5.50905 5.57587 5.72967 5.81176 6.14501 6.21493 6.55350 6.82607 6.91917 7.37583 7.43701 8.93677 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.007973 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.141256 B = 3511.041195 C = 3993.093287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.052 3.948 5 N -0.503 5.503 6 C 0.209 3.791 7 C -0.504 4.504 8 H 0.061 0.939 9 C -0.003 4.003 10 N -0.939 5.939 11 Si 0.965 3.035 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.093 3.907 16 H 0.044 0.956 17 C -0.177 4.177 18 C -0.110 4.110 19 C -0.142 4.142 20 C 0.138 3.862 21 C -0.167 4.167 22 O -0.529 6.529 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.031 0.969 31 H 0.035 0.965 32 H -0.007 1.007 33 H -0.050 1.050 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 0.575 -17.020 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.190 4.190 4 C -0.076 4.076 5 N -0.225 5.225 6 C 0.082 3.918 7 C -0.543 4.543 8 H 0.079 0.921 9 C -0.200 4.200 10 N -0.580 5.580 11 Si 0.790 3.210 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.016 4.016 16 H 0.062 0.938 17 C -0.215 4.215 18 C -0.148 4.148 19 C -0.180 4.180 20 C 0.097 3.903 21 C -0.225 4.225 22 O -0.333 6.333 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.011 0.989 33 H -0.033 1.033 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.962 0.815 -16.336 17.776 hybrid contribution 0.865 -0.761 0.867 1.442 sum -6.097 0.054 -15.469 16.627 Atomic orbital electron populations 1.21864 0.95085 1.01487 1.01884 1.21313 0.94458 0.97324 0.97636 1.21813 1.03788 0.94429 0.98922 1.22413 0.88808 0.97763 0.98627 1.62032 1.08773 1.46381 1.05327 1.19418 0.94793 0.90816 0.86763 1.21394 0.92742 1.44245 0.95900 0.92090 1.25910 1.03692 0.95348 0.95069 1.70097 1.37626 1.49153 1.01131 0.85501 0.79389 0.78941 0.77172 1.19515 1.20850 1.19277 1.22319 0.96353 0.91104 0.91835 0.93765 1.23463 1.00542 0.99201 0.98280 1.22328 1.01924 0.97314 0.93240 1.23147 0.99258 0.97459 0.98121 1.21744 0.93268 0.82495 0.92821 1.22428 0.96955 1.01862 1.01249 1.87005 1.92574 1.15769 1.37984 0.93748 0.91096 0.92806 0.88493 0.89873 0.92718 0.96306 0.95158 0.94669 0.98873 1.03255 0.92931 0.93602 0.88045 0.91339 0.89580 0.89397 0.89543 0.91930 0.90312 0.94835 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.18 71.98 0.66 -2.81 16 2 C -0.09 -2.62 1.57 -10.79 -0.02 -2.63 16 3 C -0.13 -4.04 8.35 71.98 0.60 -3.44 16 4 C 0.05 2.00 3.86 86.30 0.33 2.33 16 5 N -0.50 -22.45 3.02 -871.28 -2.63 -25.08 16 6 C 0.21 11.81 4.58 85.56 0.39 12.20 16 7 C -0.50 -29.90 8.45 25.60 0.22 -29.68 16 8 H 0.06 3.58 7.47 -2.91 -0.02 3.56 16 9 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 10 N -0.94 -58.99 13.29 21.45 0.28 -58.70 16 11 Si 0.97 46.26 29.54 68.60 2.03 48.29 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 C 0.09 3.58 2.32 45.64 0.11 3.68 16 16 H 0.04 2.04 6.65 -2.39 -0.02 2.02 16 17 C -0.18 -5.51 5.09 31.67 0.16 -5.35 16 18 C -0.11 -2.48 6.89 31.89 0.22 -2.26 16 19 C -0.14 -3.03 5.40 31.67 0.17 -2.86 16 20 C 0.14 4.10 0.95 -10.07 -0.01 4.09 16 21 C -0.17 -4.83 8.50 71.98 0.61 -4.22 16 22 O -0.53 -16.17 7.18 -148.98 -1.07 -17.24 16 23 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 26 H 0.10 2.63 2.47 -2.38 -0.01 2.63 16 27 H 0.08 2.97 4.87 -2.39 -0.01 2.95 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.03 1.15 5.61 -2.39 -0.01 1.14 16 31 H 0.03 1.49 7.77 -2.39 -0.02 1.47 16 32 H -0.01 -0.43 7.77 -2.39 -0.02 -0.45 16 33 H -0.05 -3.07 8.07 -2.39 -0.02 -3.09 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 3.10 3.49 -2.39 -0.01 3.09 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.47 7.84 -2.39 -0.02 1.46 16 40 H 0.09 1.73 6.15 -2.39 -0.01 1.72 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.03 1.20 7.88 -2.38 -0.02 1.19 16 44 H 0.37 7.81 9.07 -74.06 -0.67 7.14 16 Total: -1.00 -69.18 319.74 2.82 -66.37 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.30 Total: 17.05 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.91 Total: -30.68 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -2.35 Total: -83.78 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.07 Total: -17.24 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.18 2.82 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.252 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds