Wall clock time and date at job start Mon Mar 30 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.53001 * 109.47316 * 119.99893 * 2 1 3 5 5 N 1.46908 * 109.46674 * 62.90697 * 4 2 1 6 6 C 1.46895 * 110.99861 * 75.47976 * 5 4 2 7 7 C 1.50705 * 109.46808 * 198.30369 * 6 5 4 8 8 H 1.07991 * 120.00036 * 355.13291 * 7 6 5 9 9 C 1.37884 * 119.99644 * 175.13959 * 7 6 5 10 10 N 1.31512 * 119.99400 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00250 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46884 * 269.99945 * 11 9 7 13 13 H 1.48500 * 109.46911 * 150.00464 * 11 9 7 14 14 H 1.48497 * 109.46961 * 29.99986 * 11 9 7 15 15 C 1.46900 * 110.99837 * 199.42953 * 5 4 2 16 16 H 1.08995 * 110.02145 * 197.49465 * 15 5 4 17 17 C 1.54268 * 110.03502 * 318.93678 * 15 5 4 18 18 C 1.54883 * 104.20110 * 142.89311 * 17 15 5 19 19 C 1.54891 * 102.74711 * 322.06104 * 18 17 15 20 20 C 1.53880 * 110.03272 * 76.10167 * 15 5 4 21 21 C 1.52996 * 110.03135 * 359.97438 * 20 15 5 22 22 O 1.42897 * 110.03263 * 121.38027 * 20 15 5 23 23 H 1.08992 * 109.47197 * 64.86239 * 1 2 3 24 24 H 1.08999 * 109.47209 * 184.86786 * 1 2 3 25 25 H 1.09008 * 109.46953 * 304.86687 * 1 2 3 26 26 H 1.09001 * 109.46850 * 239.99784 * 2 1 3 27 27 H 1.08999 * 109.46848 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46592 * 299.99956 * 3 2 1 29 29 H 1.09003 * 109.46590 * 60.00247 * 3 2 1 30 30 H 1.08997 * 109.47224 * 302.91070 * 4 2 1 31 31 H 1.08998 * 109.47405 * 182.90545 * 4 2 1 32 32 H 1.09000 * 109.47599 * 78.30309 * 6 5 4 33 33 H 1.09000 * 109.47464 * 318.29816 * 6 5 4 34 34 H 0.97004 * 119.99944 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.48977 * 261.57454 * 17 15 5 36 36 H 1.09011 * 110.48526 * 24.21594 * 17 15 5 37 37 H 1.08997 * 110.76511 * 203.74621 * 18 17 15 38 38 H 1.09006 * 110.75571 * 80.36870 * 18 17 15 39 39 H 1.09006 * 110.48495 * 279.25924 * 19 18 17 40 40 H 1.09002 * 110.48995 * 156.62335 * 19 18 17 41 41 H 1.09005 * 109.47131 * 50.24444 * 21 20 15 42 42 H 1.08999 * 109.47456 * 170.23963 * 21 20 15 43 43 H 1.08998 * 109.47397 * 290.24674 * 21 20 15 44 44 H 0.96698 * 113.99868 * 179.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6085 -2.1251 1.2146 6 6 2.4109 -2.8990 0.2580 7 6 1.6865 -4.1740 -0.0895 8 1 0.7649 -4.4257 0.4139 9 6 2.2006 -5.0191 -1.0500 10 7 1.5687 -6.1320 -1.3528 11 14 3.7945 -4.5833 -1.9211 12 1 3.4920 -3.7879 -3.1382 13 1 4.5039 -5.8293 -2.3079 14 1 4.6547 -3.7863 -1.0100 15 6 1.6626 -2.7256 2.5541 16 1 1.6457 -3.8127 2.4767 17 6 2.9397 -2.2669 3.2878 18 6 2.4907 -2.0938 4.7600 19 6 1.0669 -1.5013 4.6157 20 6 0.4717 -2.2388 3.3985 21 6 -0.3953 -1.2813 2.5787 22 8 -0.3080 -3.3543 3.8340 23 1 -0.3633 0.4365 -0.9303 24 1 -0.3633 -1.0239 0.0872 25 1 -0.3633 0.5875 0.8432 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6348 -0.2384 2.1385 31 1 3.1288 -0.6763 1.2757 32 1 3.3760 -3.1394 0.7040 33 1 2.5651 -2.3107 -0.6466 34 1 1.9301 -6.7264 -2.0289 35 1 3.7168 -3.0276 3.2130 36 1 3.2926 -1.3184 2.8826 37 1 3.1466 -1.3994 5.2850 38 1 2.4585 -3.0568 5.2698 39 1 1.1173 -0.4293 4.4250 40 1 0.4772 -1.7033 5.5099 41 1 -0.6270 -1.7354 1.6152 42 1 -1.3213 -1.0785 3.1167 43 1 0.1446 -0.3478 2.4198 44 1 -1.0743 -3.1125 4.3719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304528504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:43 Heat of formation + Delta-G solvation = -44.109415 kcal Electronic energy + Delta-G solvation = -21302.850891 eV Core-core repulsion = 18448.293718 eV Total energy + Delta-G solvation = -2854.557172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90019 -36.68607 -34.69468 -33.50203 -32.06088 -30.09621 -28.12734 -27.07885 -26.79434 -24.98476 -23.52685 -21.48593 -20.87987 -19.20906 -18.39153 -16.70168 -16.25149 -15.49888 -15.33214 -14.92406 -14.28057 -14.07773 -13.77285 -13.24202 -13.15746 -12.61856 -12.57292 -12.34467 -12.16220 -12.05164 -11.85782 -11.61375 -11.21783 -11.17306 -10.92157 -10.86559 -10.65464 -10.53677 -10.50273 -10.19922 -10.12244 -9.83967 -9.76971 -9.65055 -9.32355 -9.17838 -8.49730 -7.26396 -5.97907 -3.93759 3.30761 3.38603 3.40200 4.42549 4.47331 4.68669 4.90170 5.11443 5.18736 5.25050 5.33695 5.37717 5.55913 5.58568 5.70421 5.76001 5.81449 5.84522 5.94109 5.94877 6.00502 6.01670 6.09902 6.15705 6.20359 6.27909 6.37645 6.38628 6.40479 6.50979 6.51330 6.72470 6.78386 6.82867 6.94304 7.02686 7.13643 7.70142 7.99036 8.10499 8.14713 8.73776 9.15340 9.64271 11.15554 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.008911 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.497849 B = 3141.472971 C = 3861.142380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.048 3.952 5 N -0.510 5.510 6 C 0.162 3.838 7 C -0.501 4.501 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.101 3.899 16 H 0.106 0.894 17 C -0.161 4.161 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.133 3.867 21 C -0.175 4.175 22 O -0.552 6.552 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.025 0.975 32 H -0.012 1.012 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 13.515 9.391 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.080 4.080 5 N -0.232 5.232 6 C 0.036 3.964 7 C -0.540 4.540 8 H 0.100 0.900 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.009 4.009 16 H 0.124 0.876 17 C -0.200 4.200 18 C -0.155 4.155 19 C -0.189 4.189 20 C 0.092 3.908 21 C -0.232 4.232 22 O -0.357 6.357 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.005 0.995 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.232 13.000 8.746 15.670 hybrid contribution 1.379 0.469 0.012 1.457 sum 1.147 13.469 8.758 16.107 Atomic orbital electron populations 1.21994 0.94918 1.03374 0.99621 1.21119 0.96766 0.94443 0.98984 1.21830 1.00472 0.96788 1.01149 1.22416 0.96734 0.91076 0.97776 1.62024 1.55094 1.00123 1.05966 1.20206 0.91560 0.93931 0.90678 1.21059 1.09894 1.01994 1.21015 0.89979 1.24889 0.96753 0.94998 0.96693 1.69901 1.39376 1.11889 1.32830 0.86936 0.84771 0.77974 0.80486 1.20290 1.21339 1.19423 1.22077 0.89793 1.01544 0.87463 0.87633 1.23152 0.99386 1.01872 0.95604 1.22358 0.95755 1.00583 0.96827 1.23129 0.97356 0.99778 0.98595 1.21844 0.91518 0.85695 0.91757 1.22940 0.97867 0.99785 1.02603 1.86658 1.42449 1.33717 1.72827 0.94313 0.89873 0.93666 0.90918 0.93297 0.92960 0.93196 0.91006 0.95709 0.99462 0.95747 0.92831 0.91598 0.90954 0.92298 0.91414 0.91421 0.91749 0.88695 0.94772 0.91093 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.65 37.16 0.28 -1.83 16 2 C -0.09 -1.45 2.96 -90.62 -0.27 -1.72 16 3 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 4 C 0.05 0.78 2.21 -3.82 -0.01 0.77 16 5 N -0.51 -10.08 2.21 -226.74 -0.50 -10.58 16 6 C 0.16 3.87 3.55 -4.98 -0.02 3.85 16 7 C -0.50 -14.24 9.04 -34.44 -0.31 -14.56 16 8 H 0.08 2.59 7.97 -52.49 -0.42 2.17 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 11 Si 0.87 21.72 27.38 -169.99 -4.65 17.07 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.27 -6.49 6.68 56.52 0.38 -6.11 16 15 C 0.10 1.91 2.56 -66.59 -0.17 1.74 16 16 H 0.11 2.46 7.01 -51.93 -0.36 2.10 16 17 C -0.16 -2.61 5.73 -25.07 -0.14 -2.75 16 18 C -0.12 -1.58 6.91 -24.74 -0.17 -1.76 16 19 C -0.15 -1.95 5.90 -25.07 -0.15 -2.10 16 20 C 0.13 2.11 1.13 -89.50 -0.10 2.01 16 21 C -0.18 -2.61 6.28 37.16 0.23 -2.38 16 22 O -0.55 -9.31 12.90 -35.23 -0.45 -9.76 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.45 5.49 -51.93 -0.29 1.17 16 25 H 0.04 0.59 6.70 -51.92 -0.35 0.24 16 26 H 0.07 1.29 6.67 -51.93 -0.35 0.94 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.05 4.64 -51.93 -0.24 0.81 16 31 H 0.02 0.41 6.77 -51.93 -0.35 0.06 16 32 H -0.01 -0.30 7.11 -51.93 -0.37 -0.67 16 33 H 0.02 0.59 5.61 -51.93 -0.29 0.29 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.12 5.16 -51.92 -0.27 0.85 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 40 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.09 1.69 5.09 -51.93 -0.26 1.42 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.98 3.37 -51.93 -0.18 0.81 16 44 H 0.36 4.39 9.07 45.56 0.41 4.80 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -30.80 315.61 -7.32 -38.11 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.66 Total: 5.85 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -0.58 Total: -18.28 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.27 Total: -37.75 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.45 Total: -9.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.65 Total: 17.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.80 -7.32 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304528504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.997 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds