Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46741 * 2 1 4 4 C 1.52996 * 109.47283 * 305.00256 * 3 2 1 5 5 C 1.53000 * 109.46947 * 184.99636 * 3 2 1 6 6 O 1.42901 * 109.47165 * 65.00388 * 3 2 1 7 7 C 1.42900 * 114.00324 * 179.97438 * 6 3 2 8 8 C 1.53001 * 109.47132 * 179.97438 * 7 6 3 9 9 N 1.46898 * 109.46844 * 65.00734 * 8 7 6 10 10 C 1.46902 * 110.99651 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46866 * 185.37362 * 10 9 8 12 12 C 1.50704 * 115.55169 * 294.79949 * 11 10 9 13 13 H 1.08003 * 120.00137 * 95.20107 * 12 11 10 14 14 C 1.37877 * 119.99772 * 274.92999 * 12 11 10 15 15 N 1.31508 * 120.00319 * 355.41935 * 14 12 11 16 16 Si 1.86804 * 119.99690 * 175.41526 * 14 12 11 17 17 H 1.48503 * 109.46535 * 90.00186 * 16 14 12 18 18 H 1.48497 * 109.47005 * 209.99611 * 16 14 12 19 19 H 1.48495 * 109.47372 * 330.00093 * 16 14 12 20 20 C 1.53004 * 117.50138 * 80.46976 * 11 10 9 21 21 C 1.52998 * 117.50158 * 149.12768 * 11 10 9 22 22 H 1.09004 * 109.46899 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47395 * 299.99644 * 1 2 3 24 24 H 1.08997 * 109.47019 * 60.00237 * 1 2 3 25 25 H 1.08996 * 109.46873 * 240.00327 * 2 1 3 26 26 H 1.08997 * 109.47019 * 119.99763 * 2 1 3 27 27 H 1.08998 * 109.47103 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46854 * 299.99964 * 4 3 2 29 29 H 1.08997 * 109.47573 * 60.00045 * 4 3 2 30 30 H 1.08998 * 109.47783 * 300.00335 * 5 3 2 31 31 H 1.09006 * 109.46848 * 60.00739 * 5 3 2 32 32 H 1.08998 * 109.47357 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.46847 * 59.99844 * 7 6 3 34 34 H 1.08993 * 109.47182 * 300.00386 * 7 6 3 35 35 H 1.08996 * 109.47366 * 305.00177 * 8 7 6 36 36 H 1.09005 * 109.46888 * 184.99721 * 8 7 6 37 37 H 1.00902 * 110.99737 * 303.94301 * 9 8 7 38 38 H 1.08995 * 109.47311 * 65.37944 * 10 9 8 39 39 H 1.08993 * 109.47076 * 305.37045 * 10 9 8 40 40 H 0.97004 * 120.00286 * 185.00248 * 15 14 12 41 41 H 1.08998 * 117.49727 * 215.00494 * 20 11 10 42 42 H 1.09000 * 117.49374 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49634 * 359.97438 * 21 11 10 44 44 H 1.08994 * 117.50107 * 144.97003 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4298 2.1992 -1.1815 5 6 3.5648 1.4444 -0.1256 6 8 1.6619 2.0814 1.2211 7 6 2.0922 3.4402 1.3237 8 6 1.6341 4.0205 2.6632 9 7 2.3109 3.3149 3.7595 10 6 1.8950 3.8470 5.0641 11 6 2.7162 3.1829 6.1711 12 6 2.4969 1.7019 6.3437 13 1 3.1574 0.9981 5.8591 14 6 1.4564 1.2456 7.1249 15 7 0.7109 2.0997 7.7914 16 14 1.1057 -0.5858 7.2364 17 1 1.8789 -1.1701 8.3616 18 1 -0.3453 -0.7986 7.4696 19 1 1.5049 -1.2445 5.9668 20 6 4.1248 3.7229 6.4265 21 6 3.0029 4.0059 7.4286 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7934 3.2267 -1.1818 28 1 1.7182 1.7119 -2.1129 29 1 0.3435 2.1979 -1.0920 30 1 3.9995 0.9054 0.7161 31 1 3.8532 0.9572 -1.0571 32 1 3.9281 2.4721 -0.1261 33 1 1.6590 4.0209 0.5093 34 1 3.1795 3.4827 1.2617 35 1 0.5557 3.8974 2.7628 36 1 1.8842 5.0807 2.7044 37 1 2.1470 2.3207 3.7053 38 1 0.8369 3.6376 5.2213 39 1 2.0594 4.9242 5.0862 40 1 0.0259 1.7759 8.3972 41 1 4.8928 3.0070 6.7193 42 1 4.4662 4.5516 5.8062 43 1 2.6068 5.0206 7.4671 44 1 3.0324 3.4763 8.3808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308691134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -39.763962 kcal Electronic energy + Delta-G solvation = -19928.824875 eV Core-core repulsion = 17074.456135 eV Total energy + Delta-G solvation = -2854.368739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.14714 -36.87690 -35.00988 -33.30659 -31.80980 -30.23125 -28.74007 -27.45859 -25.52586 -24.15556 -23.29833 -21.32335 -20.78354 -19.62882 -18.94583 -16.44645 -15.91691 -15.46768 -15.20420 -14.72929 -14.54359 -13.95323 -13.83009 -13.78352 -13.49199 -12.96494 -12.61100 -12.19617 -12.16341 -11.97290 -11.75166 -11.56169 -11.42783 -11.31051 -11.07661 -10.88209 -10.80777 -10.73788 -10.68598 -10.36982 -10.17048 -10.01267 -9.31114 -9.19489 -8.76506 -8.31117 -7.96503 -7.39014 -5.93606 -4.00247 3.33652 3.40685 3.45092 3.85735 4.47046 4.73833 4.81668 4.96386 4.98834 5.29987 5.34580 5.45116 5.46259 5.54226 5.55458 5.57355 5.62360 5.67668 5.73851 5.85479 5.90323 5.96514 6.08029 6.16500 6.18893 6.27541 6.31247 6.33719 6.43916 6.56650 6.66052 6.92201 6.93940 7.00790 7.28004 7.51256 7.60332 7.69086 7.96694 8.09959 8.43756 8.59037 9.03076 9.65129 11.13697 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005984 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.246130 B = 4678.282424 C = 5614.092056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.112 3.888 4 C -0.179 4.179 5 C -0.177 4.177 6 O -0.368 6.368 7 C 0.062 3.938 8 C 0.060 3.940 9 N -0.678 5.678 10 C 0.105 3.895 11 C 0.047 3.953 12 C -0.488 4.488 13 H 0.059 0.941 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.355 0.645 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 0.468 -16.248 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.072 3.928 4 C -0.237 4.237 5 C -0.235 4.235 6 O -0.288 6.288 7 C -0.015 4.015 8 C -0.070 4.070 9 N -0.311 5.311 10 C -0.023 4.023 11 C 0.046 3.954 12 C -0.526 4.526 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.239 4.239 21 C -0.195 4.195 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.175 0.825 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.295 0.775 -16.067 16.138 hybrid contribution -1.008 -1.094 0.085 1.490 sum 0.286 -0.319 -15.982 15.988 Atomic orbital electron populations 1.21790 0.95470 1.01261 1.02376 1.21494 0.96665 0.93986 1.02472 1.21423 0.93333 0.93191 0.84803 1.22485 1.02103 1.00676 0.98397 1.22411 0.96046 1.02577 1.02445 1.88010 1.78068 1.25277 1.37414 1.22611 0.99146 0.82841 0.96907 1.21911 0.96484 0.97985 0.90594 1.60480 1.59392 1.09718 1.01493 1.21437 0.97458 0.95482 0.87969 1.18750 0.90992 0.93866 0.91746 1.20464 1.12171 0.89581 1.30424 0.92261 1.24993 0.95679 0.97155 0.95533 1.70008 1.21732 1.33400 1.26757 0.86689 0.77324 0.86129 0.78503 1.20822 1.21375 1.19674 1.22859 0.93778 1.02426 1.04791 1.22492 1.02514 0.98542 0.95903 0.93133 0.91641 0.92895 0.91212 0.90835 0.92417 0.91970 0.91473 0.91294 0.92140 0.92173 0.93741 0.92400 0.95493 0.90887 0.82530 0.95254 0.94524 0.93231 0.91011 0.91854 0.92428 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.32 37.16 0.35 -1.40 16 2 C -0.11 -1.26 5.23 -26.73 -0.14 -1.40 16 3 C 0.11 1.37 0.82 -90.62 -0.07 1.29 16 4 C -0.18 -1.83 7.76 37.16 0.29 -1.54 16 5 C -0.18 -2.01 8.25 37.16 0.31 -1.70 16 6 O -0.37 -5.69 9.04 -35.23 -0.32 -6.01 16 7 C 0.06 0.88 5.48 37.16 0.20 1.09 16 8 C 0.06 1.01 6.10 -3.82 -0.02 0.99 16 9 N -0.68 -13.93 6.47 -113.78 -0.74 -14.67 16 10 C 0.11 2.44 5.54 -3.82 -0.02 2.42 16 11 C 0.05 1.19 1.65 -155.66 -0.26 0.94 16 12 C -0.49 -13.48 8.33 -34.44 -0.29 -13.77 16 13 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 14 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 15 N -0.88 -25.41 12.65 55.43 0.70 -24.70 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.20 -4.66 9.96 -26.69 -0.27 -4.92 16 21 C -0.16 -3.84 9.14 -26.70 -0.24 -4.09 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 24 H 0.05 0.54 6.34 -51.93 -0.33 0.21 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 33 H 0.04 0.55 6.42 -51.93 -0.33 0.21 16 34 H 0.06 0.83 6.42 -51.93 -0.33 0.50 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.36 7.93 7.87 -39.29 -0.31 7.62 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -28.66 346.39 -8.60 -37.26 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.18 Total: 6.69 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.26 Total: -20.27 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.04 Total: -39.37 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.32 Total: -6.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.66 -8.60 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308691134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.503 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds