Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46741 * 2 1 4 4 C 1.52996 * 109.47283 * 305.00256 * 3 2 1 5 5 C 1.53000 * 109.46947 * 184.99636 * 3 2 1 6 6 O 1.42901 * 109.47165 * 65.00388 * 3 2 1 7 7 C 1.42900 * 114.00324 * 179.97438 * 6 3 2 8 8 C 1.53001 * 109.47132 * 179.97438 * 7 6 3 9 9 N 1.46898 * 109.46844 * 65.00734 * 8 7 6 10 10 C 1.46902 * 110.99651 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46866 * 185.37362 * 10 9 8 12 12 C 1.50704 * 115.55169 * 294.79949 * 11 10 9 13 13 H 1.08003 * 120.00137 * 95.20107 * 12 11 10 14 14 C 1.37877 * 119.99772 * 274.92999 * 12 11 10 15 15 N 1.31508 * 120.00319 * 355.41935 * 14 12 11 16 16 Si 1.86804 * 119.99690 * 175.41526 * 14 12 11 17 17 H 1.48503 * 109.46535 * 90.00186 * 16 14 12 18 18 H 1.48497 * 109.47005 * 209.99611 * 16 14 12 19 19 H 1.48495 * 109.47372 * 330.00093 * 16 14 12 20 20 C 1.53004 * 117.50138 * 80.46976 * 11 10 9 21 21 C 1.52998 * 117.50158 * 149.12768 * 11 10 9 22 22 H 1.09004 * 109.46899 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47395 * 299.99644 * 1 2 3 24 24 H 1.08997 * 109.47019 * 60.00237 * 1 2 3 25 25 H 1.08996 * 109.46873 * 240.00327 * 2 1 3 26 26 H 1.08997 * 109.47019 * 119.99763 * 2 1 3 27 27 H 1.08998 * 109.47103 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46854 * 299.99964 * 4 3 2 29 29 H 1.08997 * 109.47573 * 60.00045 * 4 3 2 30 30 H 1.08998 * 109.47783 * 300.00335 * 5 3 2 31 31 H 1.09006 * 109.46848 * 60.00739 * 5 3 2 32 32 H 1.08998 * 109.47357 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.46847 * 59.99844 * 7 6 3 34 34 H 1.08993 * 109.47182 * 300.00386 * 7 6 3 35 35 H 1.08996 * 109.47366 * 305.00177 * 8 7 6 36 36 H 1.09005 * 109.46888 * 184.99721 * 8 7 6 37 37 H 1.00902 * 110.99737 * 303.94301 * 9 8 7 38 38 H 1.08995 * 109.47311 * 65.37944 * 10 9 8 39 39 H 1.08993 * 109.47076 * 305.37045 * 10 9 8 40 40 H 0.97004 * 120.00286 * 185.00248 * 15 14 12 41 41 H 1.08998 * 117.49727 * 215.00494 * 20 11 10 42 42 H 1.09000 * 117.49374 * 0.02562 * 20 11 10 43 43 H 1.09004 * 117.49634 * 359.97438 * 21 11 10 44 44 H 1.08994 * 117.50107 * 144.97003 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4298 2.1992 -1.1815 5 6 3.5648 1.4444 -0.1256 6 8 1.6619 2.0814 1.2211 7 6 2.0922 3.4402 1.3237 8 6 1.6341 4.0205 2.6632 9 7 2.3109 3.3149 3.7595 10 6 1.8950 3.8470 5.0641 11 6 2.7162 3.1829 6.1711 12 6 2.4969 1.7019 6.3437 13 1 3.1574 0.9981 5.8591 14 6 1.4564 1.2456 7.1249 15 7 0.7109 2.0997 7.7914 16 14 1.1057 -0.5858 7.2364 17 1 1.8789 -1.1701 8.3616 18 1 -0.3453 -0.7986 7.4696 19 1 1.5049 -1.2445 5.9668 20 6 4.1248 3.7229 6.4265 21 6 3.0029 4.0059 7.4286 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7934 3.2267 -1.1818 28 1 1.7182 1.7119 -2.1129 29 1 0.3435 2.1979 -1.0920 30 1 3.9995 0.9054 0.7161 31 1 3.8532 0.9572 -1.0571 32 1 3.9281 2.4721 -0.1261 33 1 1.6590 4.0209 0.5093 34 1 3.1795 3.4827 1.2617 35 1 0.5557 3.8974 2.7628 36 1 1.8842 5.0807 2.7044 37 1 2.1470 2.3207 3.7053 38 1 0.8369 3.6376 5.2213 39 1 2.0594 4.9242 5.0862 40 1 0.0259 1.7759 8.3972 41 1 4.8928 3.0070 6.7193 42 1 4.4662 4.5516 5.8062 43 1 2.6068 5.0206 7.4671 44 1 3.0324 3.4763 8.3808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308691134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -56.476292 kcal Electronic energy + Delta-G solvation = -19929.549576 eV Core-core repulsion = 17074.456135 eV Total energy + Delta-G solvation = -2855.093440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17546 -38.72100 -36.38311 -34.60535 -33.92526 -31.14071 -30.15082 -28.28792 -27.59221 -25.70685 -24.42791 -22.87508 -22.45012 -20.93453 -20.60926 -17.94452 -17.45784 -16.71673 -16.64897 -16.36140 -16.00811 -15.63064 -15.18439 -14.92616 -14.64142 -14.39850 -14.08306 -13.64503 -13.27300 -13.04903 -12.99775 -12.86128 -12.84688 -12.76568 -12.69352 -12.59672 -12.32285 -12.17615 -11.98421 -11.87193 -11.62546 -11.24803 -11.07240 -10.82263 -10.36294 -10.31635 -9.90154 -9.09829 -8.07122 -6.18813 1.38844 1.41238 1.50860 2.42980 2.84314 3.20263 3.33569 3.77954 3.84351 3.96278 4.09999 4.27075 4.36391 4.39982 4.44013 4.50927 4.60605 4.65060 4.68243 4.71763 4.74036 4.75906 4.87542 4.92984 4.95616 5.04812 5.05322 5.07561 5.11334 5.18583 5.20665 5.32171 5.33832 5.40169 5.53475 5.67014 5.72640 5.82491 6.36724 6.49097 6.52156 6.66601 6.90219 7.48974 8.99702 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005984 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.246130 B = 4678.282424 C = 5614.092056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.103 3.897 4 C -0.174 4.174 5 C -0.174 4.174 6 O -0.398 6.398 7 C 0.069 3.931 8 C 0.058 3.942 9 N -0.675 5.675 10 C 0.120 3.880 11 C 0.020 3.980 12 C -0.499 4.499 13 H 0.049 0.951 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.944 3.056 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.269 1.269 20 C -0.177 4.177 21 C -0.160 4.160 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.015 0.985 36 H 0.091 0.909 37 H 0.342 0.658 38 H -0.005 1.005 39 H 0.051 0.949 40 H 0.258 0.742 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 0.542 -18.351 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.064 3.936 4 C -0.231 4.231 5 C -0.231 4.231 6 O -0.318 6.318 7 C -0.008 4.008 8 C -0.071 4.071 9 N -0.306 5.306 10 C -0.010 4.010 11 C 0.019 3.981 12 C -0.537 4.537 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.548 5.548 16 Si 0.770 3.230 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.215 4.215 21 C -0.198 4.198 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.109 0.891 37 H 0.160 0.840 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.872 0.855 -18.183 18.300 hybrid contribution -1.163 -1.114 0.707 1.758 sum 0.710 -0.259 -17.477 17.493 Atomic orbital electron populations 1.21760 0.95505 1.01616 1.01726 1.21548 0.96654 0.93925 1.02624 1.21681 0.94054 0.93406 0.84468 1.22433 1.01669 1.00834 0.98176 1.22384 0.95299 1.02680 1.02777 1.87983 1.78552 1.25818 1.39492 1.22533 0.99256 0.82956 0.96019 1.22068 0.95585 0.98821 0.90664 1.60488 1.59751 1.09026 1.01378 1.21188 0.94976 0.96080 0.88750 1.18925 0.93100 0.93197 0.92858 1.20675 1.12023 0.90928 1.30110 0.93279 1.25644 0.95587 1.00961 0.95392 1.70109 1.22234 1.35004 1.27414 0.85766 0.77059 0.81601 0.78557 1.20206 1.21228 1.19342 1.22832 0.92599 1.02491 1.03534 1.22392 1.03873 0.98773 0.94797 0.92319 0.94509 0.91239 0.88588 0.93093 0.91933 0.89874 0.91868 0.93324 0.89807 0.91960 0.91118 0.92252 0.96638 0.89063 0.84022 0.98660 0.93010 0.93318 0.91196 0.89493 0.91137 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.32 71.98 0.67 -2.61 16 2 C -0.11 -2.43 5.23 30.60 0.16 -2.27 16 3 C 0.10 2.34 0.82 -10.79 -0.01 2.33 16 4 C -0.17 -3.05 7.76 71.98 0.56 -2.49 16 5 C -0.17 -3.62 8.25 71.98 0.59 -3.03 16 6 O -0.40 -12.07 9.04 -148.98 -1.35 -13.42 16 7 C 0.07 1.87 5.48 71.98 0.39 2.26 16 8 C 0.06 1.89 6.10 86.30 0.53 2.42 16 9 N -0.68 -27.61 6.47 -513.90 -3.32 -30.93 16 10 C 0.12 5.54 5.54 86.30 0.48 6.02 16 11 C 0.02 1.01 1.65 -52.92 -0.09 0.92 16 12 C -0.50 -27.94 8.33 25.60 0.21 -27.73 16 13 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 14 C 0.02 1.35 5.43 84.66 0.46 1.80 16 15 N -0.91 -53.32 12.65 21.45 0.27 -53.05 16 16 Si 0.94 44.75 29.54 68.60 2.03 46.78 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 C -0.18 -8.00 9.96 30.62 0.30 -7.70 16 21 C -0.16 -7.87 9.14 30.62 0.28 -7.59 16 22 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.04 1.00 7.82 -2.39 -0.02 0.99 16 24 H 0.07 1.28 6.34 -2.39 -0.02 1.26 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.03 6.55 -2.39 -0.02 1.02 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.16 6.34 -2.39 -0.02 1.15 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.06 1.25 6.54 -2.39 -0.02 1.24 16 33 H 0.07 1.55 6.42 -2.39 -0.02 1.53 16 34 H 0.06 1.59 6.42 -2.39 -0.02 1.58 16 35 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.34 15.53 7.87 -89.69 -0.71 14.83 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 39 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 40 H 0.26 14.49 8.32 -92.70 -0.77 13.72 16 41 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -61.70 346.39 2.41 -59.29 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.24 Total: 28.98 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.54 Total: -37.65 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.05 Total: -83.99 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.35 Total: -13.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.70 2.41 -59.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308691134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.819 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds