Wall clock time and date at job start Mon Mar 30 2020 07:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00191 * 2 1 4 4 H 1.09000 * 110.01042 * 28.60534 * 3 2 1 5 5 C 1.54266 * 110.03089 * 267.16766 * 3 2 1 6 6 C 1.54888 * 104.19619 * 264.32732 * 5 3 2 7 7 C 1.54892 * 102.74650 * 322.05705 * 6 5 3 8 8 C 1.53870 * 110.03214 * 150.00014 * 3 2 1 9 9 H 1.09003 * 110.03511 * 359.95167 * 8 3 2 10 10 N 1.46903 * 110.03261 * 238.56746 * 8 3 2 11 11 C 1.46908 * 110.99711 * 50.32945 * 10 8 3 12 12 C 1.50695 * 109.46894 * 190.00097 * 11 10 8 13 13 H 1.08007 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99961 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99784 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46786 * 90.00664 * 16 14 12 18 18 H 1.48502 * 109.46800 * 210.00367 * 16 14 12 19 19 H 1.48502 * 109.47043 * 330.00554 * 16 14 12 20 20 C 1.46900 * 110.99957 * 174.28179 * 10 8 3 21 21 C 1.52999 * 109.46893 * 78.25466 * 20 10 8 22 22 C 1.53000 * 109.47259 * 62.59735 * 21 20 10 23 23 C 1.52999 * 109.47130 * 182.59870 * 21 20 10 24 24 H 1.08996 * 109.46912 * 60.00013 * 1 2 3 25 25 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46781 * 300.00209 * 1 2 3 27 27 H 1.09009 * 110.48777 * 23.00198 * 5 3 2 28 28 H 1.08998 * 110.48912 * 145.50953 * 5 3 2 29 29 H 1.08994 * 110.75609 * 80.36784 * 6 5 3 30 30 H 1.08997 * 110.75465 * 203.56173 * 6 5 3 31 31 H 1.09001 * 110.48529 * 279.26614 * 7 6 5 32 32 H 1.08998 * 110.48816 * 156.62205 * 7 6 5 33 33 H 1.08997 * 109.47102 * 310.00123 * 11 10 8 34 34 H 1.08995 * 109.46818 * 70.00220 * 11 10 8 35 35 H 0.96998 * 119.99736 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46802 * 198.25389 * 20 10 8 37 37 H 1.09002 * 109.47250 * 318.25386 * 20 10 8 38 38 H 1.09003 * 109.47332 * 302.59648 * 21 20 10 39 39 H 1.09003 * 109.47294 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.46901 * 299.99834 * 22 21 20 41 41 H 1.09003 * 109.47020 * 59.99722 * 22 21 20 42 42 H 1.08992 * 109.47352 * 59.99587 * 23 21 20 43 43 H 1.08994 * 109.47494 * 179.97438 * 23 21 20 44 44 H 1.09003 * 109.46831 * 300.00084 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0119 0.4904 5 6 2.2907 1.7590 -1.4476 6 6 3.7775 1.3921 -1.6794 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2777 0.7228 9 1 3.5838 0.2687 1.0744 10 7 3.3547 2.2127 1.8558 11 6 2.1726 1.9979 2.7012 12 6 2.0600 3.1195 3.7014 13 1 2.7933 3.9124 3.7086 14 6 1.0213 3.1330 4.6080 15 7 0.9227 4.1121 5.4805 16 14 -0.2467 1.7613 4.5960 17 1 0.1977 0.6685 5.4980 18 1 -1.5526 2.2903 5.0654 19 1 -0.3933 1.2347 3.2152 20 6 4.5909 2.1053 2.6420 21 6 5.7185 2.8489 1.9235 22 6 5.3681 4.3350 1.8256 23 6 7.0208 2.6826 2.7091 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6513 1.2201 -2.1469 28 1 2.1411 2.8342 -1.5462 29 1 3.8817 0.3332 -1.9158 30 1 4.2085 2.0070 -2.4694 31 1 4.6244 2.7839 -0.2252 32 1 5.3462 1.1447 -0.1803 33 1 1.2790 1.9761 2.0776 34 1 2.2709 1.0492 3.2288 35 1 0.1917 4.1217 6.1181 36 1 4.4346 2.5460 3.6267 37 1 4.8610 1.0551 2.7527 38 1 5.8437 2.4384 0.9215 39 1 6.1717 4.8649 1.3141 40 1 4.4403 4.4535 1.2659 41 1 5.2428 4.7455 2.8276 42 1 7.2704 1.6240 2.7789 43 1 7.8242 3.2120 2.1970 44 1 6.8955 3.0931 3.7111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309375955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:57 Heat of formation + Delta-G solvation = -46.941613 kcal Electronic energy + Delta-G solvation = -20951.256571 eV Core-core repulsion = 18096.576585 eV Total energy + Delta-G solvation = -2854.679986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45712 -37.03220 -34.95584 -33.88941 -32.16463 -28.59092 -27.91028 -26.78402 -26.59312 -25.94918 -23.91781 -21.32405 -20.54829 -19.36661 -18.97701 -16.90400 -16.68029 -15.60553 -14.99879 -14.61931 -14.44802 -14.35354 -13.78736 -13.67520 -13.33644 -13.08396 -12.64937 -12.34597 -12.26393 -11.78251 -11.62499 -11.55892 -11.26643 -11.19117 -11.05610 -10.84240 -10.78721 -10.53658 -10.48672 -10.31388 -10.23708 -9.81320 -9.74488 -9.57177 -9.22352 -9.12424 -8.56287 -7.34291 -6.05496 -4.01702 3.26542 3.34374 3.35525 3.98146 4.41016 4.78658 4.84899 4.97804 5.25159 5.26823 5.42097 5.50038 5.50917 5.60571 5.64776 5.74849 5.78860 5.84923 5.87972 5.92811 6.01182 6.09924 6.12287 6.13326 6.24040 6.27132 6.29425 6.34467 6.39150 6.47303 6.56932 6.62126 6.67217 6.85773 6.98353 7.01808 7.10380 7.49282 7.65099 7.97257 8.10895 8.67145 9.04798 9.56960 11.07453 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.010310 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.149686 B = 2715.049199 C = 4294.816405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.077 3.923 4 H 0.087 0.913 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.082 3.918 9 H 0.044 0.956 10 N -0.517 5.517 11 C 0.157 3.843 12 C -0.505 4.505 13 H 0.083 0.917 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.871 3.129 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.067 3.933 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.145 4.145 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.031 0.969 34 H -0.018 1.018 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.018 0.982 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -5.352 -12.061 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.019 3.981 4 H 0.105 0.895 5 C -0.177 4.177 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.027 4.027 9 H 0.062 0.938 10 N -0.241 5.241 11 C 0.031 3.969 12 C -0.544 4.544 13 H 0.101 0.899 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.061 4.061 21 C -0.126 4.126 22 C -0.190 4.190 23 C -0.203 4.203 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.000 1.000 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.036 0.964 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.358 -4.978 -12.079 14.120 hybrid contribution -1.028 -1.385 0.558 1.813 sum 4.329 -6.362 -11.521 13.855 Atomic orbital electron populations 1.22768 0.81734 1.02087 1.00133 1.87862 1.19168 1.28482 1.94995 1.23038 0.95565 0.84575 0.94910 0.89543 1.22781 0.97119 1.01108 0.96731 1.22450 0.95286 1.00796 0.97318 1.22688 0.96872 1.02495 0.93294 1.22297 0.92932 0.94855 0.92645 0.93791 1.62071 1.03275 1.49094 1.09623 1.20279 0.88710 0.95798 0.92092 1.21057 1.11760 1.08155 1.13380 0.89863 1.24886 0.97523 0.95560 0.95315 1.69892 1.32264 1.31889 1.19848 0.86931 0.81565 0.82863 0.78728 1.20384 1.21249 1.19260 1.22102 0.88869 0.96917 0.98217 1.21536 0.93844 0.97248 1.00015 1.21665 1.00863 0.94533 1.01956 1.21820 0.97270 1.00666 1.00585 0.94399 0.90228 0.93696 0.91744 0.90775 0.91847 0.91902 0.89345 0.91968 0.95167 1.00033 0.92739 0.89213 0.96399 0.90305 0.94735 0.91216 0.92972 0.93518 0.93301 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.85 101.05 1.10 1.54 16 2 O -0.39 -6.78 10.25 -35.23 -0.36 -7.14 16 3 C 0.08 1.33 2.44 -25.62 -0.06 1.27 16 4 H 0.09 1.69 5.37 -51.93 -0.28 1.41 16 5 C -0.14 -1.97 6.57 -25.07 -0.16 -2.13 16 6 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 7 C -0.12 -1.67 4.36 -25.07 -0.11 -1.78 16 8 C 0.08 1.46 2.47 -66.59 -0.16 1.29 16 9 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 10 N -0.52 -10.53 3.66 -226.74 -0.83 -11.35 16 11 C 0.16 3.79 3.47 -4.97 -0.02 3.77 16 12 C -0.51 -14.05 8.76 -34.44 -0.30 -14.35 16 13 H 0.08 2.50 7.59 -52.48 -0.40 2.11 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 16 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.07 1.28 4.21 -3.82 -0.02 1.26 16 21 C -0.11 -1.69 2.42 -90.62 -0.22 -1.91 16 22 C -0.13 -2.18 8.69 37.16 0.32 -1.85 16 23 C -0.15 -2.00 9.19 37.16 0.34 -1.66 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.06 0.84 8.07 -51.92 -0.42 0.43 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.31 5.87 -51.93 -0.31 1.01 16 32 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 33 H 0.03 0.74 4.53 -51.93 -0.24 0.51 16 34 H -0.02 -0.45 7.55 -51.93 -0.39 -0.85 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 37 H 0.02 0.33 7.82 -51.93 -0.41 -0.07 16 38 H 0.08 1.15 3.96 -51.93 -0.21 0.94 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.25 7.30 -51.93 -0.38 0.87 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -29.47 329.41 -7.64 -37.11 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.96 Total: 0.51 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 0.44 Total: -14.41 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.06 Total: -37.87 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.36 Total: -7.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.47 -7.64 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.835 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds