Wall clock time and date at job start Mon Mar 30 2020 07:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00191 * 2 1 4 4 H 1.09000 * 110.01042 * 28.60534 * 3 2 1 5 5 C 1.54266 * 110.03089 * 267.16766 * 3 2 1 6 6 C 1.54888 * 104.19619 * 264.32732 * 5 3 2 7 7 C 1.54892 * 102.74650 * 322.05705 * 6 5 3 8 8 C 1.53870 * 110.03214 * 150.00014 * 3 2 1 9 9 H 1.09003 * 110.03511 * 359.95167 * 8 3 2 10 10 N 1.46903 * 110.03261 * 238.56746 * 8 3 2 11 11 C 1.46908 * 110.99711 * 50.32945 * 10 8 3 12 12 C 1.50695 * 109.46894 * 190.00097 * 11 10 8 13 13 H 1.08007 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00059 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99961 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99784 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46786 * 90.00664 * 16 14 12 18 18 H 1.48502 * 109.46800 * 210.00367 * 16 14 12 19 19 H 1.48502 * 109.47043 * 330.00554 * 16 14 12 20 20 C 1.46900 * 110.99957 * 174.28179 * 10 8 3 21 21 C 1.52999 * 109.46893 * 78.25466 * 20 10 8 22 22 C 1.53000 * 109.47259 * 62.59735 * 21 20 10 23 23 C 1.52999 * 109.47130 * 182.59870 * 21 20 10 24 24 H 1.08996 * 109.46912 * 60.00013 * 1 2 3 25 25 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46781 * 300.00209 * 1 2 3 27 27 H 1.09009 * 110.48777 * 23.00198 * 5 3 2 28 28 H 1.08998 * 110.48912 * 145.50953 * 5 3 2 29 29 H 1.08994 * 110.75609 * 80.36784 * 6 5 3 30 30 H 1.08997 * 110.75465 * 203.56173 * 6 5 3 31 31 H 1.09001 * 110.48529 * 279.26614 * 7 6 5 32 32 H 1.08998 * 110.48816 * 156.62205 * 7 6 5 33 33 H 1.08997 * 109.47102 * 310.00123 * 11 10 8 34 34 H 1.08995 * 109.46818 * 70.00220 * 11 10 8 35 35 H 0.96998 * 119.99736 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46802 * 198.25389 * 20 10 8 37 37 H 1.09002 * 109.47250 * 318.25386 * 20 10 8 38 38 H 1.09003 * 109.47332 * 302.59648 * 21 20 10 39 39 H 1.09003 * 109.47294 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.46901 * 299.99834 * 22 21 20 41 41 H 1.09003 * 109.47020 * 59.99722 * 22 21 20 42 42 H 1.08992 * 109.47352 * 59.99587 * 23 21 20 43 43 H 1.08994 * 109.47494 * 179.97438 * 23 21 20 44 44 H 1.09003 * 109.46831 * 300.00084 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0119 0.4904 5 6 2.2907 1.7590 -1.4476 6 6 3.7775 1.3921 -1.6794 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2777 0.7228 9 1 3.5838 0.2687 1.0744 10 7 3.3547 2.2127 1.8558 11 6 2.1726 1.9979 2.7012 12 6 2.0600 3.1195 3.7014 13 1 2.7933 3.9124 3.7086 14 6 1.0213 3.1330 4.6080 15 7 0.9227 4.1121 5.4805 16 14 -0.2467 1.7613 4.5960 17 1 0.1977 0.6685 5.4980 18 1 -1.5526 2.2903 5.0654 19 1 -0.3933 1.2347 3.2152 20 6 4.5909 2.1053 2.6420 21 6 5.7185 2.8489 1.9235 22 6 5.3681 4.3350 1.8256 23 6 7.0208 2.6826 2.7091 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6513 1.2201 -2.1469 28 1 2.1411 2.8342 -1.5462 29 1 3.8817 0.3332 -1.9158 30 1 4.2085 2.0070 -2.4694 31 1 4.6244 2.7839 -0.2252 32 1 5.3462 1.1447 -0.1803 33 1 1.2790 1.9761 2.0776 34 1 2.2709 1.0492 3.2288 35 1 0.1917 4.1217 6.1181 36 1 4.4346 2.5460 3.6267 37 1 4.8610 1.0551 2.7527 38 1 5.8437 2.4384 0.9215 39 1 6.1717 4.8649 1.3141 40 1 4.4403 4.4535 1.2659 41 1 5.2428 4.7455 2.8276 42 1 7.2704 1.6240 2.7789 43 1 7.8242 3.2120 2.1970 44 1 6.8955 3.0931 3.7111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309375955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:57 Heat of formation + Delta-G solvation = -65.493313 kcal Electronic energy + Delta-G solvation = -20952.061033 eV Core-core repulsion = 18096.576585 eV Total energy + Delta-G solvation = -2855.484448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83502 -38.43046 -36.20407 -35.57054 -34.16113 -30.26293 -29.20301 -28.28906 -27.84441 -27.23272 -25.53389 -23.11012 -21.74638 -20.71694 -20.47554 -18.94085 -18.02664 -17.07011 -16.56979 -16.21752 -15.78616 -15.77344 -15.34324 -15.03186 -14.69587 -14.50795 -14.33896 -13.95548 -13.79997 -13.17037 -13.05709 -12.91665 -12.72536 -12.68679 -12.47275 -12.36056 -12.04056 -11.98018 -11.89905 -11.74905 -11.63374 -11.43436 -11.42265 -11.12711 -10.87960 -10.74880 -10.46590 -9.02281 -8.30165 -6.31187 1.27838 1.28455 1.39166 2.29690 2.67403 3.02609 3.32360 3.63060 3.75226 4.03619 4.13809 4.22485 4.33892 4.38011 4.42419 4.47381 4.54823 4.58308 4.64816 4.71660 4.76327 4.83615 4.87207 4.92183 4.94841 5.01052 5.02822 5.09512 5.11423 5.17935 5.20645 5.22512 5.23161 5.35740 5.47906 5.55350 5.60829 5.72263 6.00257 6.26839 6.39605 6.69149 6.75612 7.31376 8.86053 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.010310 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.149686 B = 2715.049199 C = 4294.816405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.110 4.110 8 C 0.077 3.923 9 H 0.030 0.970 10 N -0.521 5.521 11 C 0.171 3.829 12 C -0.506 4.506 13 H 0.045 0.955 14 C 0.012 3.988 15 N -0.944 5.944 16 Si 0.935 3.065 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.252 1.252 20 C 0.069 3.931 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.142 4.142 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.032 0.968 34 H -0.032 1.032 35 H 0.266 0.734 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -6.827 -14.728 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.016 3.984 4 H 0.075 0.925 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.032 4.032 9 H 0.048 0.952 10 N -0.245 5.245 11 C 0.043 3.957 12 C -0.544 4.544 13 H 0.064 0.936 14 C -0.186 4.186 15 N -0.585 5.585 16 Si 0.760 3.240 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.176 1.176 20 C -0.059 4.059 21 C -0.118 4.118 22 C -0.184 4.184 23 C -0.200 4.200 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.049 0.951 34 H -0.014 1.014 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.079 -6.456 -14.765 17.223 hybrid contribution -1.214 -0.885 1.407 2.058 sum 4.865 -7.341 -13.358 16.000 Atomic orbital electron populations 1.22927 0.80444 1.03661 1.00044 1.87829 1.20613 1.28459 1.95180 1.23045 0.94483 0.84050 0.96871 0.92531 1.22750 0.98570 1.01404 0.94455 1.22432 0.93860 1.01771 0.96771 1.22657 0.96505 1.02501 0.93121 1.22480 0.94940 0.93480 0.92297 0.95170 1.62063 1.02361 1.50306 1.09767 1.19991 0.90728 0.93338 0.91593 1.21233 1.10679 1.08157 1.14344 0.93644 1.25725 0.99832 0.98089 0.94919 1.70034 1.33419 1.34107 1.20950 0.85897 0.78899 0.79669 0.79545 1.19890 1.20360 1.17631 1.22091 0.89696 0.97258 0.96846 1.21515 0.93257 0.96080 1.00946 1.21598 1.01080 0.95467 1.00297 1.21794 0.96693 1.01751 0.99734 0.92279 0.87876 0.95970 0.90333 0.90466 0.91171 0.89193 0.89557 0.90256 0.95051 1.01390 0.92523 0.93271 0.96059 0.88103 0.91626 0.93175 0.95756 0.92392 0.90762 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.85 113.37 1.23 1.94 16 2 O -0.40 -13.50 10.25 -148.98 -1.53 -15.03 16 3 C 0.07 2.46 2.44 31.32 0.08 2.53 16 4 H 0.06 2.22 5.37 -2.39 -0.01 2.21 16 5 C -0.13 -3.41 6.57 31.67 0.21 -3.20 16 6 C -0.11 -2.41 6.91 31.89 0.22 -2.19 16 7 C -0.11 -2.88 4.36 31.67 0.14 -2.74 16 8 C 0.08 2.66 2.47 45.64 0.11 2.77 16 9 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 10 N -0.52 -21.65 3.66 -871.27 -3.18 -24.83 16 11 C 0.17 8.46 3.47 85.55 0.30 8.76 16 12 C -0.51 -29.52 8.76 25.60 0.22 -29.30 16 13 H 0.05 2.93 7.59 -2.91 -0.02 2.91 16 14 C 0.01 0.70 5.47 84.65 0.46 1.16 16 15 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 16 Si 0.94 45.26 27.47 68.60 1.88 47.15 16 17 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 20 C 0.07 2.70 4.21 86.30 0.36 3.06 16 21 C -0.10 -3.02 2.42 -10.79 -0.03 -3.05 16 22 C -0.13 -4.14 8.69 71.98 0.63 -3.52 16 23 C -0.14 -3.65 9.19 71.98 0.66 -2.99 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.02 0.71 8.10 -2.39 -0.02 0.69 16 27 H 0.08 1.79 8.07 -2.38 -0.02 1.77 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 2.32 5.87 -2.39 -0.01 2.31 16 32 H 0.08 1.82 7.30 -2.39 -0.02 1.80 16 33 H 0.03 1.57 4.53 -2.39 -0.01 1.56 16 34 H -0.03 -1.63 7.55 -2.39 -0.02 -1.65 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.05 2.30 6.58 -2.39 -0.02 2.28 16 37 H 0.02 0.80 7.82 -2.39 -0.02 0.78 16 38 H 0.10 2.66 3.96 -2.39 -0.01 2.65 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -66.76 329.41 2.95 -63.80 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.89 Total: 14.81 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.59 Total: -26.75 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.89 Total: -83.99 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.53 Total: -15.03 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -66.76 2.95 -63.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.689 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds