Wall clock time and date at job start Mon Mar 30 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00072 * 2 1 4 4 H 1.09002 * 110.01879 * 331.39140 * 3 2 1 5 5 C 1.54266 * 110.03379 * 92.83128 * 3 2 1 6 6 C 1.54892 * 104.19530 * 142.89587 * 5 3 2 7 7 C 1.54961 * 102.77790 * 322.08313 * 6 5 3 8 8 C 1.53875 * 110.03549 * 209.99890 * 3 2 1 9 9 H 1.08997 * 110.03314 * 121.37755 * 8 3 2 10 10 N 1.46901 * 110.02917 * 359.97438 * 8 3 2 11 11 C 1.46902 * 110.99939 * 289.39106 * 10 8 3 12 12 C 1.50700 * 109.47206 * 163.43305 * 11 10 8 13 13 H 1.08005 * 119.99875 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00233 * 180.27327 * 12 11 10 15 15 N 1.31515 * 119.99474 * 359.73083 * 14 12 11 16 16 Si 1.86793 * 120.00152 * 179.72384 * 14 12 11 17 17 H 1.48504 * 109.47349 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46811 * 120.00165 * 16 14 12 19 19 H 1.48493 * 109.47458 * 240.00243 * 16 14 12 20 20 C 1.46901 * 111.00191 * 165.43894 * 10 8 3 21 21 C 1.53003 * 109.46761 * 293.95534 * 20 10 8 22 22 C 1.53005 * 109.46906 * 175.00106 * 21 20 10 23 23 C 1.52997 * 109.47170 * 294.99341 * 21 20 10 24 24 H 1.09006 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47402 * 299.99616 * 1 2 3 26 26 H 1.08999 * 109.47462 * 60.00420 * 1 2 3 27 27 H 1.09001 * 110.48575 * 261.57640 * 5 3 2 28 28 H 1.08994 * 110.48752 * 24.08821 * 5 3 2 29 29 H 1.09005 * 110.75830 * 80.37674 * 6 5 3 30 30 H 1.08998 * 110.75511 * 203.55927 * 6 5 3 31 31 H 1.08994 * 110.47899 * 279.23600 * 7 6 5 32 32 H 1.09003 * 110.52812 * 156.56793 * 7 6 5 33 33 H 1.09000 * 109.47233 * 43.43386 * 11 10 8 34 34 H 1.08996 * 109.46873 * 283.43437 * 11 10 8 35 35 H 0.97006 * 119.99604 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47304 * 53.94991 * 20 10 8 37 37 H 1.08997 * 109.47281 * 173.95181 * 20 10 8 38 38 H 1.08992 * 109.47492 * 54.99905 * 21 20 10 39 39 H 1.08996 * 109.47590 * 59.99300 * 22 21 20 40 40 H 1.09000 * 109.47219 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46920 * 299.99538 * 22 21 20 42 42 H 1.08997 * 109.47581 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.47460 * 300.00915 * 23 21 20 44 44 H 1.09002 * 109.46864 * 60.00195 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2905 1.7591 1.4475 6 6 3.6252 2.5389 1.3494 7 6 4.4273 1.7160 0.3098 8 6 3.3683 1.2778 -0.7228 9 1 3.3578 1.9708 -1.5640 10 7 3.6594 -0.0825 -1.1950 11 6 3.9597 -0.9775 -0.0695 12 6 3.8517 -2.4102 -0.5242 13 1 3.5869 -2.6335 -1.5472 14 6 4.0860 -3.4359 0.3669 15 7 4.4089 -3.1638 1.6124 16 14 3.9446 -5.2117 -0.1948 17 1 3.5718 -5.2482 -1.6319 18 1 5.2486 -5.8963 -0.0047 19 1 2.9016 -5.9024 0.6052 20 6 4.7573 -0.0773 -2.1710 21 6 4.3119 0.6596 -3.4357 22 6 5.4928 0.7740 -4.4018 23 6 3.1779 -0.1182 -4.1065 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.4931 2.4110 1.8042 28 1 2.3983 0.8956 2.1038 29 1 3.4543 3.5535 0.9895 30 1 4.1359 2.5531 2.3123 31 1 4.8829 0.8456 0.7818 32 1 5.1882 2.3363 -0.1639 33 1 3.2491 -0.7978 0.7373 34 1 4.9713 -0.7849 0.2878 35 1 4.5741 -3.8854 2.2393 36 1 5.6226 0.4279 -1.7418 37 1 5.0240 -1.1036 -2.4232 38 1 3.9613 1.6570 -3.1707 39 1 5.8435 -0.2234 -4.6669 40 1 5.1756 1.2994 -5.3027 41 1 6.3007 1.3281 -3.9240 42 1 2.8608 0.4065 -5.0077 43 1 3.5285 -1.1157 -4.3715 44 1 2.3366 -0.1998 -3.4182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309375956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:00 Heat of formation + Delta-G solvation = -48.233239 kcal Electronic energy + Delta-G solvation = -21105.590103 eV Core-core repulsion = 18250.854109 eV Total energy + Delta-G solvation = -2854.735995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.23334 -36.62102 -35.04105 -33.38469 -31.90967 -27.81708 -27.65150 -26.71082 -26.47848 -25.36481 -23.93644 -21.61857 -20.22170 -19.92711 -18.15231 -16.64923 -15.88878 -15.57501 -14.65908 -14.41030 -14.32007 -13.96921 -13.80107 -13.64096 -13.19440 -12.92784 -12.34918 -12.04784 -11.97555 -11.78682 -11.53924 -11.24375 -11.03121 -10.85998 -10.69485 -10.67457 -10.64068 -10.53678 -10.43646 -10.36511 -10.13646 -9.90241 -9.70104 -9.39261 -8.90366 -8.78390 -8.21088 -6.90943 -5.83945 -3.81003 3.39879 3.47195 3.52370 4.43954 4.59104 4.95605 5.04314 5.15983 5.32831 5.44524 5.49590 5.52178 5.60770 5.73316 5.81999 5.83901 5.87889 5.97987 6.02984 6.04861 6.09907 6.15795 6.20872 6.25240 6.31590 6.33578 6.39545 6.42455 6.51566 6.59128 6.64997 6.70913 6.81689 6.97677 7.00709 7.55748 7.64868 7.95180 8.04979 8.41167 8.52541 8.81708 9.26595 9.80370 11.26985 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.009474 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.370966 B = 2954.729819 C = 3870.709914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.326 6.326 3 C 0.095 3.905 4 H 0.051 0.949 5 C -0.148 4.148 6 C -0.116 4.116 7 C -0.165 4.165 8 C 0.080 3.920 9 H 0.074 0.926 10 N -0.507 5.507 11 C 0.199 3.801 12 C -0.485 4.485 13 H 0.059 0.941 14 C 0.052 3.948 15 N -0.902 5.902 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.287 1.287 20 C 0.065 3.935 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.132 4.132 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.051 0.949 34 H -0.016 1.016 35 H 0.256 0.744 36 H 0.015 0.985 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 11.237 -5.197 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.243 6.243 3 C 0.036 3.964 4 H 0.069 0.931 5 C -0.186 4.186 6 C -0.154 4.154 7 C -0.204 4.204 8 C -0.030 4.030 9 H 0.092 0.908 10 N -0.230 5.230 11 C 0.075 3.925 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.148 4.148 15 N -0.543 5.543 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.213 1.213 20 C -0.063 4.063 21 C -0.113 4.113 22 C -0.202 4.202 23 C -0.190 4.190 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.002 0.998 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.512 10.764 -5.284 12.495 hybrid contribution 0.465 -0.434 0.301 0.704 sum -3.047 10.330 -4.984 11.867 Atomic orbital electron populations 1.22693 0.83916 1.02046 0.98083 1.88471 1.16694 1.24840 1.94317 1.22699 0.94354 0.85418 0.93972 0.93126 1.22944 0.96950 1.00362 0.98373 1.22289 0.96083 0.97849 0.99189 1.23196 0.98593 1.00812 0.97839 1.22466 0.92535 0.93020 0.95006 0.90848 1.62170 1.39418 1.04995 1.16381 1.19766 0.94140 0.90311 0.88324 1.21206 1.44214 0.90455 0.96560 0.92263 1.24921 0.96176 0.98714 0.94960 1.69973 1.49164 1.31638 1.03563 0.86575 0.77273 0.85598 0.78724 1.19850 1.21493 1.21326 1.22064 0.91887 1.00612 0.91766 1.21174 0.95476 0.99088 0.95537 1.21817 0.98211 1.01444 0.98772 1.21659 0.99193 0.99193 0.98931 0.90189 0.95606 0.95269 0.92576 0.90042 0.92327 0.91957 0.89265 0.92692 0.93108 0.99835 0.93446 0.96699 0.90172 0.92229 0.92754 0.93403 0.93360 0.94774 0.93239 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.33 -6.62 7.29 -35.23 -0.26 -6.87 16 3 C 0.09 1.64 3.01 -25.61 -0.08 1.56 16 4 H 0.05 0.77 7.80 -51.93 -0.41 0.36 16 5 C -0.15 -2.38 6.39 -25.07 -0.16 -2.54 16 6 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 7 C -0.17 -2.86 5.62 -25.03 -0.14 -3.00 16 8 C 0.08 1.43 2.81 -66.59 -0.19 1.25 16 9 H 0.07 1.20 5.91 -51.93 -0.31 0.90 16 10 N -0.51 -10.72 3.26 -226.74 -0.74 -11.46 16 11 C 0.20 5.13 2.86 -4.97 -0.01 5.12 16 12 C -0.49 -13.78 8.47 -34.44 -0.29 -14.07 16 13 H 0.06 1.70 7.61 -52.48 -0.40 1.30 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.07 1.26 4.12 -3.82 -0.02 1.25 16 21 C -0.09 -1.48 2.87 -90.62 -0.26 -1.74 16 22 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 23 C -0.13 -2.12 9.08 37.16 0.34 -1.78 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.86 5.32 -51.93 -0.28 1.58 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.42 5.64 -51.93 -0.29 1.13 16 34 H -0.02 -0.44 6.52 -51.93 -0.34 -0.78 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.01 0.29 7.62 -51.93 -0.40 -0.11 16 37 H 0.08 1.74 7.16 -51.93 -0.37 1.37 16 38 H 0.06 0.91 6.11 -51.93 -0.32 0.59 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -30.10 333.60 -8.01 -38.12 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.12 Total: -1.06 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 0.36 Total: -14.48 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.00 Total: -37.97 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.26 Total: -6.87 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.10 -8.01 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds