Wall clock time and date at job start Mon Mar 30 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00072 * 2 1 4 4 H 1.09002 * 110.01879 * 331.39140 * 3 2 1 5 5 C 1.54266 * 110.03379 * 92.83128 * 3 2 1 6 6 C 1.54892 * 104.19530 * 142.89587 * 5 3 2 7 7 C 1.54961 * 102.77790 * 322.08313 * 6 5 3 8 8 C 1.53875 * 110.03549 * 209.99890 * 3 2 1 9 9 H 1.08997 * 110.03314 * 121.37755 * 8 3 2 10 10 N 1.46901 * 110.02917 * 359.97438 * 8 3 2 11 11 C 1.46902 * 110.99939 * 289.39106 * 10 8 3 12 12 C 1.50700 * 109.47206 * 163.43305 * 11 10 8 13 13 H 1.08005 * 119.99875 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00233 * 180.27327 * 12 11 10 15 15 N 1.31515 * 119.99474 * 359.73083 * 14 12 11 16 16 Si 1.86793 * 120.00152 * 179.72384 * 14 12 11 17 17 H 1.48504 * 109.47349 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46811 * 120.00165 * 16 14 12 19 19 H 1.48493 * 109.47458 * 240.00243 * 16 14 12 20 20 C 1.46901 * 111.00191 * 165.43894 * 10 8 3 21 21 C 1.53003 * 109.46761 * 293.95534 * 20 10 8 22 22 C 1.53005 * 109.46906 * 175.00106 * 21 20 10 23 23 C 1.52997 * 109.47170 * 294.99341 * 21 20 10 24 24 H 1.09006 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47402 * 299.99616 * 1 2 3 26 26 H 1.08999 * 109.47462 * 60.00420 * 1 2 3 27 27 H 1.09001 * 110.48575 * 261.57640 * 5 3 2 28 28 H 1.08994 * 110.48752 * 24.08821 * 5 3 2 29 29 H 1.09005 * 110.75830 * 80.37674 * 6 5 3 30 30 H 1.08998 * 110.75511 * 203.55927 * 6 5 3 31 31 H 1.08994 * 110.47899 * 279.23600 * 7 6 5 32 32 H 1.09003 * 110.52812 * 156.56793 * 7 6 5 33 33 H 1.09000 * 109.47233 * 43.43386 * 11 10 8 34 34 H 1.08996 * 109.46873 * 283.43437 * 11 10 8 35 35 H 0.97006 * 119.99604 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47304 * 53.94991 * 20 10 8 37 37 H 1.08997 * 109.47281 * 173.95181 * 20 10 8 38 38 H 1.08992 * 109.47492 * 54.99905 * 21 20 10 39 39 H 1.08996 * 109.47590 * 59.99300 * 22 21 20 40 40 H 1.09000 * 109.47219 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46920 * 299.99538 * 22 21 20 42 42 H 1.08997 * 109.47581 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.47460 * 300.00915 * 23 21 20 44 44 H 1.09002 * 109.46864 * 60.00195 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2905 1.7591 1.4475 6 6 3.6252 2.5389 1.3494 7 6 4.4273 1.7160 0.3098 8 6 3.3683 1.2778 -0.7228 9 1 3.3578 1.9708 -1.5640 10 7 3.6594 -0.0825 -1.1950 11 6 3.9597 -0.9775 -0.0695 12 6 3.8517 -2.4102 -0.5242 13 1 3.5869 -2.6335 -1.5472 14 6 4.0860 -3.4359 0.3669 15 7 4.4089 -3.1638 1.6124 16 14 3.9446 -5.2117 -0.1948 17 1 3.5718 -5.2482 -1.6319 18 1 5.2486 -5.8963 -0.0047 19 1 2.9016 -5.9024 0.6052 20 6 4.7573 -0.0773 -2.1710 21 6 4.3119 0.6596 -3.4357 22 6 5.4928 0.7740 -4.4018 23 6 3.1779 -0.1182 -4.1065 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.4931 2.4110 1.8042 28 1 2.3983 0.8956 2.1038 29 1 3.4543 3.5535 0.9895 30 1 4.1359 2.5531 2.3123 31 1 4.8829 0.8456 0.7818 32 1 5.1882 2.3363 -0.1639 33 1 3.2491 -0.7978 0.7373 34 1 4.9713 -0.7849 0.2878 35 1 4.5741 -3.8854 2.2393 36 1 5.6226 0.4279 -1.7418 37 1 5.0240 -1.1036 -2.4232 38 1 3.9613 1.6570 -3.1707 39 1 5.8435 -0.2234 -4.6669 40 1 5.1756 1.2994 -5.3027 41 1 6.3007 1.3281 -3.9240 42 1 2.8608 0.4065 -5.0077 43 1 3.5285 -1.1157 -4.3715 44 1 2.3366 -0.1998 -3.4182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309375956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:59 Heat of formation + Delta-G solvation = -66.141234 kcal Electronic energy + Delta-G solvation = -21106.366652 eV Core-core repulsion = 18250.854109 eV Total energy + Delta-G solvation = -2855.512544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69475 -38.07242 -36.38291 -35.22733 -33.77573 -29.53865 -29.06548 -28.14318 -27.83086 -26.69683 -25.78195 -23.34768 -21.58141 -21.31118 -19.65087 -18.48392 -17.63007 -17.09024 -16.39879 -15.98092 -15.65419 -15.45487 -15.29386 -15.03268 -14.51007 -14.48769 -14.12105 -13.61486 -13.49991 -13.06833 -12.97494 -12.83832 -12.68756 -12.54152 -12.36875 -12.22200 -12.03896 -11.92638 -11.88793 -11.67926 -11.60814 -11.57254 -11.29510 -10.97263 -10.89424 -10.44287 -10.13662 -8.65003 -8.07261 -6.12936 1.38993 1.39822 1.52875 2.45450 3.09746 3.24222 3.51131 3.73456 3.81168 4.00523 4.19088 4.24318 4.35531 4.44898 4.49543 4.56900 4.58984 4.66452 4.75057 4.80525 4.81424 4.92700 4.93153 4.96759 5.02618 5.07006 5.10902 5.14264 5.16981 5.21647 5.24510 5.33613 5.42332 5.53257 5.59611 5.67451 5.71097 5.80654 6.28467 6.60339 6.70010 6.97894 7.04964 7.53822 9.02699 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.009474 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.370966 B = 2954.729819 C = 3870.709914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.090 3.910 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.164 4.164 8 C 0.073 3.927 9 H 0.099 0.901 10 N -0.510 5.510 11 C 0.227 3.773 12 C -0.498 4.498 13 H 0.051 0.949 14 C -0.001 4.001 15 N -0.937 5.937 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.067 3.933 21 C -0.085 4.085 22 C -0.140 4.140 23 C -0.127 4.127 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.026 0.974 34 H -0.052 1.052 35 H 0.258 0.742 36 H 0.010 0.990 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 13.056 -6.829 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.100 0.900 5 C -0.183 4.183 6 C -0.144 4.144 7 C -0.203 4.203 8 C -0.036 4.036 9 H 0.117 0.883 10 N -0.233 5.233 11 C 0.101 3.899 12 C -0.537 4.537 13 H 0.069 0.931 14 C -0.198 4.198 15 N -0.579 5.579 16 Si 0.782 3.218 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.061 4.061 21 C -0.103 4.103 22 C -0.198 4.198 23 C -0.185 4.185 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.044 0.956 34 H -0.034 1.034 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.348 12.599 -6.931 15.022 hybrid contribution 0.716 -0.961 0.806 1.444 sum -3.632 11.638 -6.126 13.644 Atomic orbital electron populations 1.22801 0.82074 1.02142 0.99905 1.88398 1.18996 1.26941 1.94642 1.22897 0.94232 0.85046 0.94712 0.90043 1.22895 0.98754 0.99536 0.97115 1.22294 0.94661 0.98893 0.98575 1.23096 0.99056 0.99752 0.98404 1.22697 0.93378 0.91372 0.96143 0.88282 1.62037 1.39706 1.06601 1.14915 1.19242 0.91223 0.90372 0.89081 1.21504 1.43835 0.92204 0.96142 0.93104 1.25756 0.95842 1.03157 0.95006 1.70106 1.50105 1.32979 1.04688 0.85528 0.77481 0.80237 0.78519 1.19117 1.20753 1.20737 1.22058 0.91528 0.99301 0.93205 1.21116 0.96419 0.98889 0.93923 1.21776 0.97302 1.01585 0.99101 1.21595 0.98283 0.98981 0.99592 0.91127 0.93873 0.93139 0.89490 0.94050 0.88689 0.91841 0.93920 0.90905 0.95592 1.03439 0.93330 0.97185 0.93483 0.90745 0.93460 0.90860 0.92722 0.91771 0.94627 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.85 113.37 1.23 2.08 16 2 O -0.37 -15.20 7.29 -148.98 -1.09 -16.29 16 3 C 0.09 2.98 3.01 31.32 0.09 3.08 16 4 H 0.08 2.18 7.80 -2.39 -0.02 2.17 16 5 C -0.15 -4.50 6.39 31.67 0.20 -4.30 16 6 C -0.11 -2.96 6.91 31.91 0.22 -2.74 16 7 C -0.16 -5.64 5.62 31.69 0.18 -5.46 16 8 C 0.07 2.58 2.81 45.64 0.13 2.71 16 9 H 0.10 2.96 5.91 -2.39 -0.01 2.94 16 10 N -0.51 -22.10 3.26 -871.28 -2.84 -24.94 16 11 C 0.23 12.36 2.86 85.56 0.24 12.60 16 12 C -0.50 -29.52 8.47 25.60 0.22 -29.30 16 13 H 0.05 3.03 7.61 -2.91 -0.02 3.00 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 16 Si 0.96 46.80 29.54 68.60 2.03 48.82 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 20 C 0.07 2.66 4.12 86.30 0.36 3.02 16 21 C -0.08 -2.53 2.87 -10.79 -0.03 -2.56 16 22 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 23 C -0.13 -3.87 9.08 71.98 0.65 -3.22 16 24 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.60 7.86 -2.39 -0.02 1.59 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.88 5.32 -2.39 -0.01 1.86 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.03 1.55 5.64 -2.39 -0.01 1.54 16 34 H -0.05 -3.13 6.52 -2.39 -0.02 -3.14 16 35 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.01 0.40 7.62 -2.39 -0.02 0.38 16 37 H 0.05 2.14 7.16 -2.39 -0.02 2.12 16 38 H 0.07 2.02 6.11 -2.39 -0.01 2.01 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 Total: -1.00 -68.78 333.60 3.93 -64.85 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.93 Total: 12.53 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.62 Total: -26.47 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.56 Total: -83.43 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.09 Total: -16.29 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -68.78 3.93 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.291 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds