Wall clock time and date at job start Mon Mar 30 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00140 * 2 1 4 4 H 1.08997 * 110.01401 * 29.93031 * 3 2 1 5 5 C 1.54261 * 110.02891 * 268.54238 * 3 2 1 6 6 C 1.54891 * 104.19696 * 217.05625 * 5 3 2 7 7 C 1.54894 * 102.74408 * 37.94270 * 6 5 3 8 8 C 1.53874 * 110.07155 * 151.35401 * 3 2 1 9 9 H 1.09005 * 110.02880 * 238.59093 * 8 3 2 10 10 N 1.46900 * 110.03365 * 0.02562 * 8 3 2 11 11 C 1.46900 * 110.99760 * 69.44474 * 10 8 3 12 12 C 1.50702 * 109.47225 * 196.26950 * 11 10 8 13 13 H 1.08001 * 119.99476 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99436 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99983 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.46752 * 90.00305 * 16 14 12 18 18 H 1.48501 * 109.47186 * 209.99769 * 16 14 12 19 19 H 1.48493 * 109.47492 * 330.00054 * 16 14 12 20 20 C 1.46901 * 110.99677 * 193.39649 * 10 8 3 21 21 C 1.53005 * 109.47080 * 76.15124 * 20 10 8 22 22 C 1.53001 * 109.47020 * 63.59047 * 21 20 10 23 23 C 1.53001 * 109.46754 * 183.59265 * 21 20 10 24 24 H 1.09004 * 109.47269 * 300.00746 * 1 2 3 25 25 H 1.09007 * 109.46725 * 60.00300 * 1 2 3 26 26 H 1.08996 * 109.47425 * 179.97438 * 1 2 3 27 27 H 1.09005 * 110.48889 * 98.37469 * 5 3 2 28 28 H 1.09001 * 110.49076 * 335.73396 * 5 3 2 29 29 H 1.09000 * 110.75717 * 279.63237 * 6 5 3 30 30 H 1.08996 * 110.75493 * 156.25401 * 6 5 3 31 31 H 1.08996 * 110.48841 * 80.74028 * 7 6 5 32 32 H 1.09006 * 110.48368 * 203.37914 * 7 6 5 33 33 H 1.09001 * 109.47289 * 316.27301 * 11 10 8 34 34 H 1.09007 * 109.47159 * 76.27057 * 11 10 8 35 35 H 0.97001 * 119.99473 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46865 * 196.14240 * 20 10 8 37 37 H 1.08993 * 109.47250 * 316.14712 * 20 10 8 38 38 H 1.09004 * 109.46590 * 303.59260 * 21 20 10 39 39 H 1.09004 * 109.47265 * 60.00627 * 22 21 20 40 40 H 1.09003 * 109.46633 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47516 * 300.00137 * 22 21 20 42 42 H 1.09004 * 109.46951 * 64.93707 * 23 21 20 43 43 H 1.09005 * 109.46614 * 184.93032 * 23 21 20 44 44 H 1.08988 * 109.47276 * 304.92857 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3512 2.0073 0.5110 5 6 2.2588 1.7731 -1.4488 6 6 3.5948 2.5531 -1.3723 7 6 4.4190 1.7205 -0.3591 8 6 3.3838 1.2720 0.6929 9 1 3.3913 1.9576 1.5402 10 7 3.6857 -0.0924 1.1460 11 6 3.9349 -0.9830 0.0047 12 6 3.8442 -2.4175 0.4577 13 1 3.6231 -2.6447 1.4901 14 6 4.0435 -3.4397 -0.4459 15 7 3.9638 -4.6915 -0.0505 16 14 4.4266 -3.0465 -2.2313 17 1 5.8969 -2.9364 -2.4094 18 1 3.9027 -4.1307 -3.1004 19 1 3.7852 -1.7601 -2.6037 20 6 4.8223 -0.0985 2.0766 21 6 4.3627 0.4050 3.4464 22 6 3.3240 -0.5597 4.0221 23 6 5.5643 0.4836 4.3903 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.4534 2.4278 -1.7820 28 1 2.3552 0.9160 -2.1152 29 1 3.4311 3.5640 -0.9989 30 1 4.0861 2.5742 -2.3451 31 1 4.8643 0.8549 -0.8494 32 1 5.1902 2.3368 0.1032 33 1 3.1901 -0.7987 -0.7695 34 1 4.9304 -0.7907 -0.3957 35 1 4.1036 -5.4107 -0.6863 36 1 5.2073 -1.1137 2.1732 37 1 5.6080 0.5532 1.6948 38 1 3.9192 1.3950 3.3394 39 1 3.7674 -1.5496 4.1291 40 1 2.9969 -0.2011 4.9981 41 1 2.4680 -0.6157 3.3496 42 1 6.2642 1.2354 4.0255 43 1 5.2243 0.7578 5.3890 44 1 6.0600 -0.4863 4.4288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309375958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:02 Heat of formation + Delta-G solvation = -45.456377 kcal Electronic energy + Delta-G solvation = -21182.830683 eV Core-core repulsion = 18328.215101 eV Total energy + Delta-G solvation = -2854.615581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38102 -36.68681 -35.15328 -33.41956 -31.97695 -28.22508 -27.88693 -26.86981 -26.52068 -25.46391 -23.88038 -21.48870 -20.31553 -19.86351 -18.27203 -16.89208 -16.23788 -15.65395 -14.76096 -14.44291 -14.37158 -14.06928 -13.76450 -13.55347 -13.28347 -13.16095 -12.56919 -12.18100 -12.10235 -11.78157 -11.72453 -11.35396 -11.16040 -10.97693 -10.83590 -10.75859 -10.68716 -10.55264 -10.40061 -10.29448 -10.24809 -9.89081 -9.61628 -9.57090 -8.99199 -8.91520 -8.38357 -7.06908 -5.88335 -3.80691 3.36955 3.44632 3.48744 4.32189 4.56681 4.79497 4.87807 5.00755 5.26682 5.40464 5.45587 5.48296 5.51737 5.70701 5.72874 5.75162 5.76363 5.83091 5.90704 5.98298 6.04526 6.09220 6.14895 6.17242 6.21628 6.26477 6.28681 6.38577 6.48972 6.53332 6.58734 6.61405 6.68358 6.98114 7.09368 7.13722 7.28750 7.79210 7.95247 8.16303 8.33095 8.88698 9.24003 9.76056 11.25661 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.010660 C = 0.007878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.910280 B = 2625.957145 C = 3553.155895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.329 6.329 3 C 0.093 3.907 4 H 0.055 0.945 5 C -0.151 4.151 6 C -0.117 4.117 7 C -0.166 4.166 8 C 0.081 3.919 9 H 0.076 0.924 10 N -0.497 5.497 11 C 0.167 3.833 12 C -0.486 4.486 13 H 0.079 0.921 14 C 0.065 3.935 15 N -0.908 5.908 16 Si 0.868 3.132 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.061 3.939 21 C -0.088 4.088 22 C -0.132 4.132 23 C -0.145 4.145 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.049 0.951 34 H -0.025 1.025 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 14.722 1.704 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.246 6.246 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.189 4.189 6 C -0.155 4.155 7 C -0.205 4.205 8 C -0.029 4.029 9 H 0.094 0.906 10 N -0.219 5.219 11 C 0.041 3.959 12 C -0.524 4.524 13 H 0.097 0.903 14 C -0.135 4.135 15 N -0.549 5.549 16 Si 0.697 3.303 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.067 4.067 21 C -0.107 4.107 22 C -0.190 4.190 23 C -0.203 4.203 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.067 0.933 34 H -0.007 1.007 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.563 14.160 1.896 14.515 hybrid contribution 0.731 0.667 -1.531 1.823 sum -1.833 14.827 0.365 14.944 Atomic orbital electron populations 1.22721 0.83561 1.02316 0.98215 1.88451 1.17065 1.24780 1.94329 1.22716 0.94440 0.85617 0.93875 0.92738 1.22979 0.97205 1.00241 0.98460 1.22298 0.95890 0.98112 0.99206 1.23189 0.98744 1.00542 0.98069 1.22474 0.92459 0.92795 0.95177 0.90574 1.61969 1.38016 1.04610 1.17278 1.20250 0.93417 0.92685 0.89538 1.21055 1.45608 0.87848 0.97936 0.90309 1.24845 0.95730 0.95015 0.97919 1.69905 1.51800 0.98550 1.34613 0.86961 0.78479 0.78324 0.86573 1.20807 1.21535 1.19076 1.22131 0.91420 1.01535 0.91592 1.21075 0.95640 0.98891 0.95069 1.21655 0.99840 0.98697 0.98775 1.21824 0.98180 1.01492 0.98818 0.95031 0.95573 0.89928 0.92223 0.90454 0.91921 0.91968 0.89963 0.92240 0.93345 1.00739 0.93089 0.89617 0.96527 0.92567 0.92993 0.94905 0.90934 0.93557 0.93291 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.54 16 2 O -0.33 -6.41 7.18 -35.23 -0.25 -6.67 16 3 C 0.09 1.51 3.00 -25.62 -0.08 1.44 16 4 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 5 C -0.15 -2.24 6.39 -25.07 -0.16 -2.40 16 6 C -0.12 -1.58 6.91 -24.73 -0.17 -1.76 16 7 C -0.17 -2.65 5.48 -25.07 -0.14 -2.79 16 8 C 0.08 1.38 2.82 -66.60 -0.19 1.19 16 9 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 10 N -0.50 -10.17 3.16 -226.74 -0.72 -10.89 16 11 C 0.17 4.04 1.97 -4.98 -0.01 4.03 16 12 C -0.49 -13.89 8.91 -34.44 -0.31 -14.20 16 13 H 0.08 2.47 7.97 -52.49 -0.42 2.05 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.37 13.96 55.43 0.77 -27.59 16 16 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 20 C 0.06 1.17 4.13 -3.82 -0.02 1.15 16 21 C -0.09 -1.40 2.97 -90.62 -0.27 -1.67 16 22 C -0.13 -2.25 9.07 37.16 0.34 -1.91 16 23 C -0.15 -1.99 9.19 37.16 0.34 -1.65 16 24 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.54 5.36 -51.93 -0.28 1.26 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.23 4.57 -51.93 -0.24 0.99 16 34 H -0.02 -0.61 5.92 -51.93 -0.31 -0.92 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.09 1.88 7.07 -51.93 -0.37 1.51 16 37 H 0.02 0.30 7.40 -51.93 -0.38 -0.08 16 38 H 0.06 0.86 6.72 -51.93 -0.35 0.51 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -30.78 330.63 -7.67 -38.45 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.13 Total: -0.60 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 0.34 Total: -15.20 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.06 Total: -38.49 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.25 Total: -6.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.78 -7.67 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.002 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds