Wall clock time and date at job start Mon Mar 30 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00140 * 2 1 4 4 H 1.08997 * 110.01401 * 29.93031 * 3 2 1 5 5 C 1.54261 * 110.02891 * 268.54238 * 3 2 1 6 6 C 1.54891 * 104.19696 * 217.05625 * 5 3 2 7 7 C 1.54894 * 102.74408 * 37.94270 * 6 5 3 8 8 C 1.53874 * 110.07155 * 151.35401 * 3 2 1 9 9 H 1.09005 * 110.02880 * 238.59093 * 8 3 2 10 10 N 1.46900 * 110.03365 * 0.02562 * 8 3 2 11 11 C 1.46900 * 110.99760 * 69.44474 * 10 8 3 12 12 C 1.50702 * 109.47225 * 196.26950 * 11 10 8 13 13 H 1.08001 * 119.99476 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99436 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99983 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.46752 * 90.00305 * 16 14 12 18 18 H 1.48501 * 109.47186 * 209.99769 * 16 14 12 19 19 H 1.48493 * 109.47492 * 330.00054 * 16 14 12 20 20 C 1.46901 * 110.99677 * 193.39649 * 10 8 3 21 21 C 1.53005 * 109.47080 * 76.15124 * 20 10 8 22 22 C 1.53001 * 109.47020 * 63.59047 * 21 20 10 23 23 C 1.53001 * 109.46754 * 183.59265 * 21 20 10 24 24 H 1.09004 * 109.47269 * 300.00746 * 1 2 3 25 25 H 1.09007 * 109.46725 * 60.00300 * 1 2 3 26 26 H 1.08996 * 109.47425 * 179.97438 * 1 2 3 27 27 H 1.09005 * 110.48889 * 98.37469 * 5 3 2 28 28 H 1.09001 * 110.49076 * 335.73396 * 5 3 2 29 29 H 1.09000 * 110.75717 * 279.63237 * 6 5 3 30 30 H 1.08996 * 110.75493 * 156.25401 * 6 5 3 31 31 H 1.08996 * 110.48841 * 80.74028 * 7 6 5 32 32 H 1.09006 * 110.48368 * 203.37914 * 7 6 5 33 33 H 1.09001 * 109.47289 * 316.27301 * 11 10 8 34 34 H 1.09007 * 109.47159 * 76.27057 * 11 10 8 35 35 H 0.97001 * 119.99473 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46865 * 196.14240 * 20 10 8 37 37 H 1.08993 * 109.47250 * 316.14712 * 20 10 8 38 38 H 1.09004 * 109.46590 * 303.59260 * 21 20 10 39 39 H 1.09004 * 109.47265 * 60.00627 * 22 21 20 40 40 H 1.09003 * 109.46633 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47516 * 300.00137 * 22 21 20 42 42 H 1.09004 * 109.46951 * 64.93707 * 23 21 20 43 43 H 1.09005 * 109.46614 * 184.93032 * 23 21 20 44 44 H 1.08988 * 109.47276 * 304.92857 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3512 2.0073 0.5110 5 6 2.2588 1.7731 -1.4488 6 6 3.5948 2.5531 -1.3723 7 6 4.4190 1.7205 -0.3591 8 6 3.3838 1.2720 0.6929 9 1 3.3913 1.9576 1.5402 10 7 3.6857 -0.0924 1.1460 11 6 3.9349 -0.9830 0.0047 12 6 3.8442 -2.4175 0.4577 13 1 3.6231 -2.6447 1.4901 14 6 4.0435 -3.4397 -0.4459 15 7 3.9638 -4.6915 -0.0505 16 14 4.4266 -3.0465 -2.2313 17 1 5.8969 -2.9364 -2.4094 18 1 3.9027 -4.1307 -3.1004 19 1 3.7852 -1.7601 -2.6037 20 6 4.8223 -0.0985 2.0766 21 6 4.3627 0.4050 3.4464 22 6 3.3240 -0.5597 4.0221 23 6 5.5643 0.4836 4.3903 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.4534 2.4278 -1.7820 28 1 2.3552 0.9160 -2.1152 29 1 3.4311 3.5640 -0.9989 30 1 4.0861 2.5742 -2.3451 31 1 4.8643 0.8549 -0.8494 32 1 5.1902 2.3368 0.1032 33 1 3.1901 -0.7987 -0.7695 34 1 4.9304 -0.7907 -0.3957 35 1 4.1036 -5.4107 -0.6863 36 1 5.2073 -1.1137 2.1732 37 1 5.6080 0.5532 1.6948 38 1 3.9192 1.3950 3.3394 39 1 3.7674 -1.5496 4.1291 40 1 2.9969 -0.2011 4.9981 41 1 2.4680 -0.6157 3.3496 42 1 6.2642 1.2354 4.0255 43 1 5.2243 0.7578 5.3890 44 1 6.0600 -0.4863 4.4288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309375958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:02 Heat of formation + Delta-G solvation = -64.633902 kcal Electronic energy + Delta-G solvation = -21183.662282 eV Core-core repulsion = 18328.215101 eV Total energy + Delta-G solvation = -2855.447181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74434 -38.09776 -36.42820 -35.18457 -33.91192 -30.05991 -29.09750 -28.25084 -27.84147 -26.72523 -25.61825 -23.14829 -21.56751 -21.25655 -19.71965 -18.88999 -17.72353 -17.08748 -16.36386 -15.96888 -15.66010 -15.40891 -15.26304 -15.13244 -14.77439 -14.52763 -14.33663 -13.81949 -13.54436 -13.14815 -13.00590 -12.88526 -12.73356 -12.49631 -12.33423 -12.10892 -11.96582 -11.92234 -11.87302 -11.70831 -11.62955 -11.58915 -11.32996 -11.09240 -10.96556 -10.65236 -10.18219 -8.67336 -8.19077 -6.15662 1.31030 1.33805 1.45277 2.38875 3.02296 3.15491 3.45022 3.70967 3.77817 4.00088 4.18491 4.23753 4.34644 4.43183 4.48215 4.54130 4.55581 4.63858 4.70916 4.76242 4.80167 4.89867 4.91878 4.94585 4.99123 5.02999 5.07022 5.10083 5.15879 5.16394 5.20930 5.29397 5.34689 5.39329 5.51193 5.58940 5.69185 5.78658 6.16983 6.53573 6.72328 6.89362 6.93776 7.45378 8.98552 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.010660 C = 0.007878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.910280 B = 2625.957145 C = 3553.155895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.166 4.166 8 C 0.075 3.925 9 H 0.098 0.902 10 N -0.509 5.509 11 C 0.189 3.811 12 C -0.485 4.485 13 H 0.034 0.966 14 C 0.004 3.996 15 N -0.955 5.955 16 Si 0.936 3.064 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.253 1.253 20 C 0.065 3.935 21 C -0.080 4.080 22 C -0.126 4.126 23 C -0.140 4.140 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.043 0.957 34 H -0.031 1.031 35 H 0.261 0.739 36 H 0.041 0.959 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 18.372 1.198 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.293 6.293 3 C 0.027 3.973 4 H 0.099 0.901 5 C -0.186 4.186 6 C -0.145 4.145 7 C -0.205 4.205 8 C -0.035 4.035 9 H 0.116 0.884 10 N -0.231 5.231 11 C 0.062 3.938 12 C -0.524 4.524 13 H 0.052 0.948 14 C -0.191 4.191 15 N -0.598 5.598 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.177 1.177 20 C -0.063 4.063 21 C -0.099 4.099 22 C -0.183 4.183 23 C -0.198 4.198 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.061 0.939 34 H -0.014 1.014 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.653 17.839 1.399 18.089 hybrid contribution 0.712 -0.471 -1.254 1.517 sum -1.940 17.368 0.146 17.476 Atomic orbital electron populations 1.22801 0.81948 1.02124 1.00052 1.88366 1.19121 1.27086 1.94689 1.22946 0.94214 0.85009 0.95094 0.90128 1.22948 0.99072 0.99778 0.96814 1.22304 0.94368 0.98880 0.98937 1.23129 0.99100 0.99997 0.98293 1.22698 0.93514 0.90723 0.96515 0.88360 1.61815 1.38528 1.06638 1.16156 1.19837 0.92615 0.90795 0.90563 1.21306 1.44407 0.90711 0.95951 0.94787 1.25703 0.95859 0.94725 1.02828 1.70066 1.53640 0.99740 1.36350 0.85868 0.78732 0.78598 0.80659 1.19784 1.21067 1.17687 1.22089 0.91504 0.99412 0.93342 1.21034 0.96322 0.99037 0.93462 1.21575 0.99055 0.97938 0.99778 1.21778 0.97286 1.01367 0.99358 0.93313 0.93426 0.91301 0.89417 0.93488 0.88813 0.91293 0.93347 0.90360 0.93928 1.01391 0.93004 0.93994 0.95339 0.90521 0.95661 0.91978 0.93601 0.91915 0.91136 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.85 113.37 1.23 2.05 16 2 O -0.37 -14.40 7.18 -148.98 -1.07 -15.47 16 3 C 0.09 2.60 3.00 31.32 0.09 2.69 16 4 H 0.08 1.99 7.82 -2.39 -0.02 1.97 16 5 C -0.15 -3.96 6.39 31.67 0.20 -3.76 16 6 C -0.11 -2.49 6.91 31.89 0.22 -2.26 16 7 C -0.17 -4.87 5.48 31.67 0.17 -4.69 16 8 C 0.07 2.39 2.82 45.64 0.13 2.51 16 9 H 0.10 2.69 6.58 -2.38 -0.02 2.67 16 10 N -0.51 -20.99 3.16 -871.27 -2.75 -23.74 16 11 C 0.19 9.36 1.97 85.56 0.17 9.53 16 12 C -0.48 -29.18 8.91 25.60 0.23 -28.95 16 13 H 0.03 2.29 7.97 -2.91 -0.02 2.27 16 14 C 0.00 0.26 5.47 84.65 0.46 0.72 16 15 N -0.96 -62.30 13.96 21.45 0.30 -62.00 16 16 Si 0.94 46.93 27.47 68.60 1.88 48.82 16 17 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 19 H -0.25 -12.03 6.54 99.48 0.65 -11.38 16 20 C 0.06 2.48 4.13 86.30 0.36 2.83 16 21 C -0.08 -2.44 2.97 -10.79 -0.03 -2.47 16 22 C -0.13 -4.31 9.07 71.98 0.65 -3.65 16 23 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 24 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 25 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.05 1.54 7.86 -2.39 -0.02 1.52 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.76 5.36 -2.39 -0.01 1.74 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.04 2.19 4.57 -2.39 -0.01 2.18 16 34 H -0.03 -1.58 5.92 -2.38 -0.01 -1.59 16 35 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.04 1.95 7.07 -2.39 -0.02 1.93 16 37 H 0.03 1.01 7.40 -2.39 -0.02 0.99 16 38 H 0.08 2.08 6.72 -2.39 -0.02 2.06 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.79 7.71 -2.39 -0.02 1.77 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.81 330.63 3.79 -67.02 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.88 Total: 13.72 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.55 Total: -28.35 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.45 Total: -85.74 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.07 Total: -15.47 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.82 kcal Total: -70.81 3.79 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.390 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds