Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00261 * 2 1 4 4 H 1.09006 * 110.01791 * 331.38998 * 3 2 1 5 5 C 1.53880 * 110.07488 * 92.80221 * 3 2 1 6 6 C 1.54269 * 106.59286 * 119.30812 * 5 3 2 7 7 C 1.54890 * 104.19944 * 23.61404 * 6 5 3 8 8 C 1.54262 * 110.03573 * 210.00057 * 3 2 1 9 9 H 1.09007 * 110.48474 * 335.85939 * 8 3 2 10 10 N 1.46900 * 110.49096 * 98.37326 * 8 3 2 11 11 C 1.46901 * 110.99891 * 296.19241 * 10 8 3 12 12 C 1.50697 * 109.46989 * 158.25666 * 11 10 8 13 13 H 1.08000 * 119.99800 * 355.06942 * 12 11 10 14 14 C 1.37876 * 120.00038 * 175.06544 * 12 11 10 15 15 N 1.31517 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47193 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46599 * 120.00516 * 16 14 12 19 19 H 1.48499 * 109.46947 * 240.00138 * 16 14 12 20 20 C 1.46892 * 110.99921 * 172.23402 * 10 8 3 21 21 C 1.53003 * 109.47224 * 200.16527 * 20 10 8 22 22 C 1.53006 * 109.46887 * 62.59690 * 21 20 10 23 23 C 1.52997 * 109.47547 * 182.59523 * 21 20 10 24 24 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47363 * 300.00292 * 1 2 3 26 26 H 1.09002 * 109.47149 * 59.99931 * 1 2 3 27 27 H 1.08993 * 110.03586 * 238.59217 * 5 3 2 28 28 H 1.08998 * 110.02974 * 0.02586 * 5 3 2 29 29 H 1.09006 * 110.48102 * 142.29410 * 6 5 3 30 30 H 1.08999 * 110.48672 * 264.93251 * 6 5 3 31 31 H 1.08996 * 110.75473 * 203.74064 * 7 6 5 32 32 H 1.08997 * 110.75345 * 80.36686 * 7 6 5 33 33 H 1.09003 * 109.46421 * 278.25804 * 11 10 8 34 34 H 1.08998 * 109.47221 * 38.25350 * 11 10 8 35 35 H 0.96993 * 120.00288 * 180.02562 * 15 14 12 36 36 H 1.09008 * 109.47214 * 80.16833 * 20 10 8 37 37 H 1.08997 * 109.47782 * 320.16963 * 20 10 8 38 38 H 1.08999 * 109.47207 * 302.59958 * 21 20 10 39 39 H 1.09002 * 109.46991 * 64.59817 * 22 21 20 40 40 H 1.08997 * 109.47085 * 184.60113 * 22 21 20 41 41 H 1.08995 * 109.47113 * 304.60333 * 22 21 20 42 42 H 1.09004 * 109.46664 * 60.00207 * 23 21 20 43 43 H 1.09002 * 109.47422 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.47222 * 300.00426 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2896 1.7591 1.4436 6 6 3.8114 1.9912 1.5457 7 6 4.2536 2.2599 0.0858 8 6 3.3718 1.2776 -0.7246 9 1 3.7957 0.2736 -0.7018 10 7 3.2261 1.7414 -2.1109 11 6 2.3639 0.8353 -2.8813 12 6 1.8047 1.5671 -4.0740 13 1 1.9988 2.6221 -4.2000 14 6 1.0453 0.8900 -5.0045 15 7 0.8086 -0.3946 -4.8509 16 14 0.3516 1.7973 -6.4826 17 1 0.7584 3.2243 -6.4232 18 1 0.8757 1.1851 -7.7299 19 1 -1.1304 1.7037 -6.4700 20 6 4.5372 1.8952 -2.7551 21 6 4.4058 2.8240 -3.9638 22 6 3.9625 4.2114 -3.4951 23 6 5.7573 2.9329 -4.6727 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7557 2.6858 1.6537 28 1 1.9823 0.9834 2.1449 29 1 4.0240 2.8561 2.1741 30 1 4.3072 1.1030 1.9372 31 1 5.3106 2.0291 -0.0463 32 1 4.0438 3.2912 -0.1977 33 1 2.9477 -0.0203 -3.2208 34 1 1.5451 0.4892 -2.2506 35 1 0.2748 -0.8710 -5.5056 36 1 4.8973 0.9202 -3.0835 37 1 5.2438 2.3226 -2.0436 38 1 3.6651 2.4197 -4.6538 39 1 4.7407 4.6496 -2.8702 40 1 3.7900 4.8497 -4.3617 41 1 3.0412 4.1232 -2.9196 42 1 6.0730 1.9445 -5.0066 43 1 5.6637 3.5949 -5.5336 44 1 6.4979 3.3371 -3.9828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309375960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -59.125437 kcal Electronic energy + Delta-G solvation = -20924.085582 eV Core-core repulsion = 18068.877266 eV Total energy + Delta-G solvation = -2855.208316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10306 -36.79134 -35.22546 -33.25526 -32.18122 -28.18495 -27.69726 -26.48512 -26.38358 -25.61809 -23.92652 -21.45135 -20.23605 -19.24378 -18.89910 -16.58732 -16.28174 -15.49560 -14.86131 -14.71914 -14.36891 -14.04903 -13.53762 -13.39922 -13.30040 -13.02778 -12.19149 -12.14207 -12.02677 -11.66256 -11.61499 -11.26190 -11.08822 -11.05661 -10.91015 -10.84166 -10.52535 -10.42996 -10.32556 -10.21426 -10.11817 -10.03857 -9.79392 -9.22553 -9.02459 -8.91360 -8.30514 -7.15649 -5.94629 -3.93168 3.32433 3.40734 3.44747 4.24391 4.47199 4.84417 4.91829 5.16826 5.30332 5.37854 5.67461 5.71204 5.73411 5.79004 5.83181 5.88045 5.89837 5.93380 6.00110 6.11862 6.14087 6.19554 6.26389 6.28731 6.33630 6.34969 6.36960 6.46135 6.48852 6.59172 6.66434 6.76425 6.88033 7.20612 7.38447 7.48178 7.55009 7.78133 7.94412 8.25569 8.32587 8.66078 9.14479 9.67737 11.15238 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.008987 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.485604 B = 3114.746844 C = 4401.599964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.094 3.906 4 H 0.077 0.923 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.115 4.115 8 C 0.084 3.916 9 H 0.044 0.956 10 N -0.529 5.529 11 C 0.187 3.813 12 C -0.500 4.500 13 H 0.074 0.926 14 C 0.053 3.947 15 N -0.896 5.896 16 Si 0.887 3.113 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.077 3.923 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.077 0.923 33 H -0.007 1.007 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.021 0.979 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 5.210 9.302 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.036 3.964 4 H 0.095 0.905 5 C -0.182 4.182 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.025 4.025 9 H 0.061 0.939 10 N -0.253 5.253 11 C 0.062 3.938 12 C -0.539 4.539 13 H 0.092 0.908 14 C -0.148 4.148 15 N -0.536 5.536 16 Si 0.715 3.285 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.051 4.051 21 C -0.128 4.128 22 C -0.186 4.186 23 C -0.201 4.201 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.011 0.989 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.628 5.345 9.226 11.624 hybrid contribution -0.276 -0.321 -0.918 1.011 sum 4.352 5.025 8.308 10.640 Atomic orbital electron populations 1.22687 0.81601 1.02126 0.99665 1.87911 1.19338 1.27967 1.94745 1.22738 0.95358 0.84835 0.93508 0.90477 1.22636 0.96756 1.01009 0.97801 1.22247 0.95550 1.00877 0.97022 1.22518 0.98498 1.00356 0.93910 1.22405 0.93332 0.96412 0.90374 0.93851 1.62241 1.12433 1.50776 0.99852 1.19879 0.91682 0.89748 0.92499 1.21410 1.30113 0.96423 1.05908 0.90785 1.24996 0.96740 0.94812 0.98218 1.69990 1.39734 1.07938 1.35940 0.86611 0.78770 0.80133 0.82979 1.19578 1.21253 1.21241 1.21937 0.90489 0.97367 0.95344 1.21501 0.97291 0.95847 0.98163 1.21633 1.01478 0.95736 0.99706 1.21830 0.97852 1.00698 0.99708 0.90387 0.95208 0.93155 0.91776 0.91368 0.91988 0.91898 0.91969 0.90410 0.98893 0.94481 0.93240 0.96091 0.93130 0.86733 0.94902 0.94647 0.91031 0.93442 0.93425 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.62 101.05 1.07 1.67 16 2 O -0.38 -7.39 9.19 -35.23 -0.32 -7.72 16 3 C 0.09 1.67 2.12 -25.61 -0.05 1.62 16 4 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 5 C -0.14 -2.03 6.62 -25.61 -0.17 -2.20 16 6 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 7 C -0.11 -1.69 5.16 -24.74 -0.13 -1.82 16 8 C 0.08 1.56 2.31 -66.05 -0.15 1.41 16 9 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 10 N -0.53 -11.08 3.52 -226.10 -0.80 -11.88 16 11 C 0.19 4.79 4.65 -4.98 -0.02 4.77 16 12 C -0.50 -13.46 7.09 -34.44 -0.24 -13.70 16 13 H 0.07 1.95 5.35 -52.49 -0.28 1.67 16 14 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 15 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.08 1.49 4.28 -3.83 -0.02 1.47 16 21 C -0.11 -2.08 2.43 -90.62 -0.22 -2.30 16 22 C -0.13 -2.25 8.57 37.16 0.32 -1.93 16 23 C -0.14 -2.29 9.19 37.16 0.34 -1.95 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.86 7.50 -51.93 -0.39 0.47 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H -0.01 -0.20 7.68 -51.93 -0.40 -0.60 16 34 H 0.04 1.01 5.51 -51.93 -0.29 0.72 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.02 0.44 7.70 -51.92 -0.40 0.04 16 37 H 0.05 0.86 6.11 -51.93 -0.32 0.55 16 38 H 0.11 2.61 4.88 -51.93 -0.25 2.35 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.38 7.18 -51.93 -0.37 1.01 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -28.83 333.61 -8.05 -36.88 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.13 Total: 0.26 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 0.46 Total: -13.27 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.06 Total: -37.57 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.32 Total: -7.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.83 -8.05 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.248 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds