Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00261 * 2 1 4 4 H 1.09006 * 110.01791 * 331.38998 * 3 2 1 5 5 C 1.53880 * 110.07488 * 92.80221 * 3 2 1 6 6 C 1.54269 * 106.59286 * 119.30812 * 5 3 2 7 7 C 1.54890 * 104.19944 * 23.61404 * 6 5 3 8 8 C 1.54262 * 110.03573 * 210.00057 * 3 2 1 9 9 H 1.09007 * 110.48474 * 335.85939 * 8 3 2 10 10 N 1.46900 * 110.49096 * 98.37326 * 8 3 2 11 11 C 1.46901 * 110.99891 * 296.19241 * 10 8 3 12 12 C 1.50697 * 109.46989 * 158.25666 * 11 10 8 13 13 H 1.08000 * 119.99800 * 355.06942 * 12 11 10 14 14 C 1.37876 * 120.00038 * 175.06544 * 12 11 10 15 15 N 1.31517 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47193 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46599 * 120.00516 * 16 14 12 19 19 H 1.48499 * 109.46947 * 240.00138 * 16 14 12 20 20 C 1.46892 * 110.99921 * 172.23402 * 10 8 3 21 21 C 1.53003 * 109.47224 * 200.16527 * 20 10 8 22 22 C 1.53006 * 109.46887 * 62.59690 * 21 20 10 23 23 C 1.52997 * 109.47547 * 182.59523 * 21 20 10 24 24 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47363 * 300.00292 * 1 2 3 26 26 H 1.09002 * 109.47149 * 59.99931 * 1 2 3 27 27 H 1.08993 * 110.03586 * 238.59217 * 5 3 2 28 28 H 1.08998 * 110.02974 * 0.02586 * 5 3 2 29 29 H 1.09006 * 110.48102 * 142.29410 * 6 5 3 30 30 H 1.08999 * 110.48672 * 264.93251 * 6 5 3 31 31 H 1.08996 * 110.75473 * 203.74064 * 7 6 5 32 32 H 1.08997 * 110.75345 * 80.36686 * 7 6 5 33 33 H 1.09003 * 109.46421 * 278.25804 * 11 10 8 34 34 H 1.08998 * 109.47221 * 38.25350 * 11 10 8 35 35 H 0.96993 * 120.00288 * 180.02562 * 15 14 12 36 36 H 1.09008 * 109.47214 * 80.16833 * 20 10 8 37 37 H 1.08997 * 109.47782 * 320.16963 * 20 10 8 38 38 H 1.08999 * 109.47207 * 302.59958 * 21 20 10 39 39 H 1.09002 * 109.46991 * 64.59817 * 22 21 20 40 40 H 1.08997 * 109.47085 * 184.60113 * 22 21 20 41 41 H 1.08995 * 109.47113 * 304.60333 * 22 21 20 42 42 H 1.09004 * 109.46664 * 60.00207 * 23 21 20 43 43 H 1.09002 * 109.47422 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.47222 * 300.00426 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2896 1.7591 1.4436 6 6 3.8114 1.9912 1.5457 7 6 4.2536 2.2599 0.0858 8 6 3.3718 1.2776 -0.7246 9 1 3.7957 0.2736 -0.7018 10 7 3.2261 1.7414 -2.1109 11 6 2.3639 0.8353 -2.8813 12 6 1.8047 1.5671 -4.0740 13 1 1.9988 2.6221 -4.2000 14 6 1.0453 0.8900 -5.0045 15 7 0.8086 -0.3946 -4.8509 16 14 0.3516 1.7973 -6.4826 17 1 0.7584 3.2243 -6.4232 18 1 0.8757 1.1851 -7.7299 19 1 -1.1304 1.7037 -6.4700 20 6 4.5372 1.8952 -2.7551 21 6 4.4058 2.8240 -3.9638 22 6 3.9625 4.2114 -3.4951 23 6 5.7573 2.9329 -4.6727 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7557 2.6858 1.6537 28 1 1.9823 0.9834 2.1449 29 1 4.0240 2.8561 2.1741 30 1 4.3072 1.1030 1.9372 31 1 5.3106 2.0291 -0.0463 32 1 4.0438 3.2912 -0.1977 33 1 2.9477 -0.0203 -3.2208 34 1 1.5451 0.4892 -2.2506 35 1 0.2748 -0.8710 -5.5056 36 1 4.8973 0.9202 -3.0835 37 1 5.2438 2.3226 -2.0436 38 1 3.6651 2.4197 -4.6538 39 1 4.7407 4.6496 -2.8702 40 1 3.7900 4.8497 -4.3617 41 1 3.0412 4.1232 -2.9196 42 1 6.0730 1.9445 -5.0066 43 1 5.6637 3.5949 -5.5336 44 1 6.4979 3.3371 -3.9828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309375960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -76.312974 kcal Electronic energy + Delta-G solvation = -20924.830890 eV Core-core repulsion = 18068.877266 eV Total energy + Delta-G solvation = -2855.953624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55776 -38.35538 -36.58741 -35.04266 -34.03190 -29.82410 -29.12856 -28.04749 -27.77361 -27.04762 -25.64335 -23.27088 -21.46632 -20.69801 -20.48781 -18.40974 -17.91418 -17.02354 -16.59630 -16.32172 -15.91566 -15.47579 -15.15869 -14.76063 -14.73726 -14.43382 -14.09228 -13.77920 -13.42883 -13.08005 -12.98631 -12.88496 -12.77639 -12.56992 -12.38338 -12.28778 -12.20817 -11.94667 -11.85137 -11.65373 -11.57487 -11.44420 -11.25876 -11.08870 -10.84251 -10.47055 -10.35528 -8.96281 -8.10882 -6.16091 1.39055 1.40442 1.52934 2.42428 2.85757 3.20007 3.39013 3.65833 3.83739 4.13144 4.20997 4.32759 4.40955 4.43565 4.48781 4.51804 4.60037 4.62306 4.71229 4.79473 4.81235 4.88135 4.92527 4.96196 5.03572 5.07689 5.13169 5.15989 5.19427 5.22379 5.27078 5.35411 5.37587 5.49155 5.51935 5.70201 5.83173 5.90361 6.19886 6.36472 6.50123 6.75310 6.99095 7.49185 8.99606 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.008987 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.485604 B = 3114.746844 C = 4401.599964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.408 6.408 3 C 0.089 3.911 4 H 0.054 0.946 5 C -0.135 4.135 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.073 3.927 9 H 0.017 0.983 10 N -0.524 5.524 11 C 0.206 3.794 12 C -0.499 4.499 13 H 0.080 0.920 14 C -0.003 4.003 15 N -0.937 5.937 16 Si 0.954 3.046 17 H -0.259 1.259 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.078 3.922 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.136 4.136 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.082 0.918 33 H -0.054 1.054 34 H 0.015 0.985 35 H 0.258 0.742 36 H -0.005 1.005 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 7.719 10.534 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.328 6.328 3 C 0.031 3.969 4 H 0.072 0.928 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.036 4.036 9 H 0.035 0.965 10 N -0.248 5.248 11 C 0.080 3.920 12 C -0.537 4.537 13 H 0.098 0.902 14 C -0.200 4.200 15 N -0.579 5.579 16 Si 0.780 3.220 17 H -0.182 1.182 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.050 4.050 21 C -0.130 4.130 22 C -0.177 4.177 23 C -0.194 4.194 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.101 0.899 33 H -0.036 1.036 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.013 0.987 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.776 7.878 10.472 14.321 hybrid contribution -0.604 -1.140 -1.273 1.813 sum 5.172 6.738 9.199 12.520 Atomic orbital electron populations 1.22737 0.80526 1.02855 0.99777 1.87867 1.20679 1.29231 1.95015 1.22864 0.94215 0.83740 0.96034 0.92785 1.22580 0.98257 1.01843 0.94661 1.22247 0.94107 1.02527 0.95886 1.22485 0.98293 0.99084 0.94415 1.22651 0.95044 0.96402 0.89526 0.96470 1.62238 1.12910 1.48830 1.00781 1.19486 0.91137 0.88906 0.92455 1.21692 1.29311 0.96649 1.06065 0.90197 1.25851 0.97301 0.95525 1.01302 1.70138 1.40907 1.09669 1.37176 0.85548 0.77900 0.79389 0.79173 1.18227 1.21046 1.20903 1.22020 0.90081 0.96521 0.96391 1.21415 0.98078 0.96406 0.97147 1.21531 1.01229 0.94800 1.00129 1.21754 0.96426 1.00840 1.00377 0.89468 0.91940 0.96023 0.89957 0.90753 0.88818 0.91359 0.90589 0.89949 1.03644 0.96692 0.93300 0.98656 0.89888 0.91066 0.92129 0.93880 0.93269 0.94189 0.92284 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.62 113.37 1.20 2.49 16 2 O -0.41 -16.41 9.19 -148.98 -1.37 -17.78 16 3 C 0.09 3.21 2.12 31.32 0.07 3.28 16 4 H 0.05 2.16 7.70 -2.38 -0.02 2.14 16 5 C -0.14 -3.50 6.62 31.32 0.21 -3.29 16 6 C -0.11 -2.43 6.83 31.67 0.22 -2.21 16 7 C -0.11 -2.83 5.16 31.89 0.16 -2.66 16 8 C 0.07 2.73 2.31 45.99 0.11 2.83 16 9 H 0.02 0.74 8.08 -2.38 -0.02 0.72 16 10 N -0.52 -22.58 3.52 -869.24 -3.06 -25.64 16 11 C 0.21 11.25 4.65 85.56 0.40 11.64 16 12 C -0.50 -27.91 7.09 25.60 0.18 -27.73 16 13 H 0.08 4.31 5.35 -2.91 -0.02 4.29 16 14 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 15 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 16 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 C 0.08 3.02 4.28 86.31 0.37 3.39 16 21 C -0.11 -4.17 2.43 -10.79 -0.03 -4.20 16 22 C -0.12 -3.94 8.57 71.98 0.62 -3.33 16 23 C -0.14 -4.09 9.19 71.98 0.66 -3.43 16 24 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.02 0.84 7.93 -2.39 -0.02 0.82 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.86 7.96 -2.39 -0.02 1.84 16 29 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.85 7.50 -2.39 -0.02 1.83 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H -0.05 -3.40 7.68 -2.39 -0.02 -3.42 16 34 H 0.02 0.88 5.51 -2.39 -0.01 0.87 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.00 -0.21 7.70 -2.38 -0.02 -0.23 16 37 H 0.08 2.67 6.11 -2.39 -0.01 2.65 16 38 H 0.07 3.30 4.88 -2.39 -0.01 3.29 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.83 7.18 -2.39 -0.02 1.81 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.32 333.61 3.44 -62.88 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.93 Total: 14.04 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.63 Total: -22.91 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.78 Total: -83.16 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.37 Total: -17.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.32 3.44 -62.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309375960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.437 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds