Wall clock time and date at job start Mon Mar 30 2020 07:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47386 * 2 1 4 4 H 1.08999 * 109.48266 * 305.02645 * 3 2 1 5 5 C 1.53092 * 109.48397 * 184.99836 * 3 2 1 6 6 C 1.53178 * 109.16581 * 182.40981 * 5 3 2 7 7 H 1.08995 * 109.54026 * 297.02597 * 6 5 3 8 8 C 1.53000 * 109.54188 * 176.84980 * 6 5 3 9 9 N 1.46907 * 109.46848 * 175.00138 * 8 6 5 10 10 C 1.46896 * 110.99733 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47208 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47600 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47460 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.53173 * 109.03321 * 56.98202 * 6 5 3 22 22 C 1.53088 * 109.16647 * 303.01910 * 21 6 5 23 23 O 1.42896 * 109.41612 * 57.61081 * 22 21 6 24 24 H 1.09004 * 109.47053 * 59.99624 * 1 2 3 25 25 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47023 * 300.00145 * 1 2 3 27 27 H 1.09000 * 109.47023 * 239.99855 * 2 1 3 28 28 H 1.09004 * 109.47053 * 120.00376 * 2 1 3 29 29 H 1.09002 * 109.51880 * 62.50081 * 5 3 2 30 30 H 1.08999 * 109.52272 * 302.31783 * 5 3 2 31 31 H 1.08992 * 109.47322 * 55.00028 * 8 6 5 32 32 H 1.09001 * 109.47120 * 294.99965 * 8 6 5 33 33 H 1.00896 * 110.99821 * 303.94838 * 9 8 6 34 34 H 1.09002 * 109.47668 * 59.99704 * 10 9 8 35 35 H 1.09006 * 109.47173 * 299.99617 * 10 9 8 36 36 H 1.09003 * 109.47604 * 59.99508 * 11 10 9 37 37 H 1.08999 * 109.47292 * 299.99873 * 11 10 9 38 38 H 1.09005 * 109.46800 * 60.00280 * 12 11 10 39 39 H 1.08998 * 109.47382 * 300.00079 * 12 11 10 40 40 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.52211 * 62.92570 * 21 6 5 42 42 H 1.09004 * 109.52122 * 183.11610 * 21 6 5 43 43 H 1.09004 * 109.47787 * 297.62863 * 22 21 6 44 44 H 1.09004 * 109.49064 * 177.59932 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4445 -0.1257 6 6 4.0735 2.8884 -0.0644 7 1 3.6805 3.4493 -0.9124 8 6 5.6028 2.8956 -0.1104 9 7 6.0842 4.2822 -0.1723 10 6 7.5518 4.3282 -0.2183 11 6 8.0146 5.7852 -0.2814 12 6 9.5430 5.8333 -0.3287 13 6 9.9988 7.2682 -0.3914 14 1 9.2711 8.0662 -0.3974 15 6 11.3449 7.5625 -0.4423 16 7 12.2310 6.5908 -0.4355 17 14 11.9099 9.3413 -0.5207 18 1 12.0173 9.7644 -1.9401 19 1 10.9255 10.2046 0.1800 20 1 13.2359 9.4689 0.1356 21 6 3.5970 3.5304 1.2421 22 6 2.0701 3.4478 1.3151 23 8 1.6633 2.0812 1.2217 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8534 0.9973 -1.0773 30 1 3.9996 0.8708 0.6933 31 1 5.9423 2.3534 -0.9928 32 1 5.9955 2.4143 0.7853 33 1 5.6827 4.7696 -0.9591 34 1 7.9045 3.7960 -1.1018 35 1 7.9584 3.8567 0.6764 36 1 7.6619 6.3171 0.6023 37 1 7.6080 6.2572 -1.1758 38 1 9.8961 5.3014 -1.2123 39 1 9.9493 5.3614 0.5659 40 1 13.1781 6.7978 -0.4717 41 1 4.0314 2.9988 2.0888 42 1 3.9069 4.5751 1.2688 43 1 1.6357 4.0136 0.4909 44 1 1.7282 3.8649 2.2624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309718207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:04 Heat of formation + Delta-G solvation = -90.033912 kcal Electronic energy + Delta-G solvation = -18797.296703 eV Core-core repulsion = 15940.748094 eV Total energy + Delta-G solvation = -2856.548608 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83338 -36.79883 -34.48627 -34.17613 -32.92539 -30.86069 -30.01084 -27.40031 -25.46244 -23.84864 -23.11610 -22.11465 -21.07265 -20.44518 -19.77205 -16.64920 -16.36124 -16.09723 -15.47812 -15.14392 -14.77758 -14.54255 -14.33698 -13.92679 -13.82457 -13.46006 -13.33601 -12.57875 -12.39432 -12.11020 -11.98291 -11.79924 -11.54415 -11.42928 -11.31775 -11.21092 -10.91578 -10.85388 -10.60993 -10.55836 -10.49361 -10.31300 -9.68414 -9.58494 -9.29633 -9.03333 -8.33261 -8.15445 -5.98355 -4.00389 3.32967 3.38995 3.42898 3.60427 4.18538 4.47413 4.56544 4.68090 4.70667 4.77966 4.90161 5.03376 5.12073 5.17413 5.26442 5.37306 5.37984 5.48735 5.53461 5.60029 5.63772 5.66809 5.78488 5.78925 5.84206 5.87231 5.92769 5.99433 6.06179 6.17373 6.29260 6.33270 6.72845 6.77820 7.10117 7.14992 7.34826 7.63229 7.70085 7.85137 8.02184 8.45478 9.06857 9.63457 11.13123 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.061741 B = 0.002691 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.395475 B =10402.749572 C =10684.231078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.055 0.945 5 C -0.145 4.145 6 C -0.086 4.086 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.690 5.690 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.287 1.287 21 C -0.141 4.141 22 C 0.060 3.940 23 O -0.381 6.381 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.335 0.665 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.036 -12.144 0.319 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.184 4.184 6 C -0.105 4.105 7 H 0.086 0.914 8 C -0.066 4.066 9 N -0.320 5.320 10 C -0.069 4.069 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.212 1.212 21 C -0.179 4.179 22 C -0.017 4.017 23 O -0.300 6.300 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.968 -12.185 1.152 25.147 hybrid contribution 0.897 0.808 -1.227 1.722 sum -21.070 -11.377 -0.075 23.946 Atomic orbital electron populations 1.21718 0.95352 1.01397 1.02235 1.21553 0.96617 0.94579 1.02676 1.22101 0.93482 0.93815 0.87185 0.92708 1.22257 0.96070 0.97260 1.02781 1.21191 0.95426 0.95455 0.98406 0.91387 1.21968 0.93660 0.90496 1.00449 1.60555 1.08747 1.13639 1.49073 1.22120 0.85531 0.99467 0.99820 1.21615 0.99581 0.92626 1.00607 1.19067 0.88495 0.96966 0.97079 1.21258 0.91668 0.92569 1.50169 0.92677 1.25043 0.96957 0.97194 0.95423 1.69971 1.01239 1.31420 1.50996 0.86585 0.78038 0.85236 0.78097 1.20714 1.19851 1.21235 1.22133 0.95203 1.02980 0.97565 1.22625 0.94652 0.82650 1.01757 1.87898 1.78689 1.25016 1.38411 0.93037 0.92883 0.91926 0.90766 0.91118 0.91128 0.90899 0.95610 0.91143 0.84740 0.95875 0.91555 0.92580 0.93722 0.96861 0.96585 0.93048 0.91308 0.89502 0.93547 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.09 0.83 2.64 -26.69 -0.07 0.76 16 4 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.33 4.70 -26.59 -0.13 -1.45 16 6 C -0.09 -0.88 2.42 -90.44 -0.22 -1.10 16 7 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 8 C 0.06 0.78 5.08 -3.82 -0.02 0.76 16 9 N -0.69 -9.95 6.04 -113.78 -0.69 -10.64 16 10 C 0.06 1.04 5.68 -3.83 -0.02 1.01 16 11 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 12 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.14 -1.48 5.27 -26.60 -0.14 -1.62 16 22 C 0.06 0.57 6.84 37.20 0.25 0.83 16 23 O -0.38 -4.09 9.94 -35.23 -0.35 -4.44 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.34 4.54 8.73 -39.29 -0.34 4.20 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.98 7.87 -51.93 -0.41 0.58 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -30.32 348.36 -9.63 -39.95 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.73 Total: -2.13 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.82 Total: -18.31 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.05 Total: -37.24 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.35 Total: -4.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.32 -9.63 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.083 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds