Wall clock time and date at job start Mon Mar 30 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47386 * 2 1 4 4 H 1.08999 * 109.48266 * 305.02645 * 3 2 1 5 5 C 1.53092 * 109.48397 * 184.99836 * 3 2 1 6 6 C 1.53178 * 109.16581 * 182.40981 * 5 3 2 7 7 H 1.08995 * 109.54026 * 297.02597 * 6 5 3 8 8 C 1.53000 * 109.54188 * 176.84980 * 6 5 3 9 9 N 1.46907 * 109.46848 * 175.00138 * 8 6 5 10 10 C 1.46896 * 110.99733 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47208 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47600 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47460 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.53173 * 109.03321 * 56.98202 * 6 5 3 22 22 C 1.53088 * 109.16647 * 303.01910 * 21 6 5 23 23 O 1.42896 * 109.41612 * 57.61081 * 22 21 6 24 24 H 1.09004 * 109.47053 * 59.99624 * 1 2 3 25 25 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47023 * 300.00145 * 1 2 3 27 27 H 1.09000 * 109.47023 * 239.99855 * 2 1 3 28 28 H 1.09004 * 109.47053 * 120.00376 * 2 1 3 29 29 H 1.09002 * 109.51880 * 62.50081 * 5 3 2 30 30 H 1.08999 * 109.52272 * 302.31783 * 5 3 2 31 31 H 1.08992 * 109.47322 * 55.00028 * 8 6 5 32 32 H 1.09001 * 109.47120 * 294.99965 * 8 6 5 33 33 H 1.00896 * 110.99821 * 303.94838 * 9 8 6 34 34 H 1.09002 * 109.47668 * 59.99704 * 10 9 8 35 35 H 1.09006 * 109.47173 * 299.99617 * 10 9 8 36 36 H 1.09003 * 109.47604 * 59.99508 * 11 10 9 37 37 H 1.08999 * 109.47292 * 299.99873 * 11 10 9 38 38 H 1.09005 * 109.46800 * 60.00280 * 12 11 10 39 39 H 1.08998 * 109.47382 * 300.00079 * 12 11 10 40 40 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.52211 * 62.92570 * 21 6 5 42 42 H 1.09004 * 109.52122 * 183.11610 * 21 6 5 43 43 H 1.09004 * 109.47787 * 297.62863 * 22 21 6 44 44 H 1.09004 * 109.49064 * 177.59932 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4445 -0.1257 6 6 4.0735 2.8884 -0.0644 7 1 3.6805 3.4493 -0.9124 8 6 5.6028 2.8956 -0.1104 9 7 6.0842 4.2822 -0.1723 10 6 7.5518 4.3282 -0.2183 11 6 8.0146 5.7852 -0.2814 12 6 9.5430 5.8333 -0.3287 13 6 9.9988 7.2682 -0.3914 14 1 9.2711 8.0662 -0.3974 15 6 11.3449 7.5625 -0.4423 16 7 12.2310 6.5908 -0.4355 17 14 11.9099 9.3413 -0.5207 18 1 12.0173 9.7644 -1.9401 19 1 10.9255 10.2046 0.1800 20 1 13.2359 9.4689 0.1356 21 6 3.5970 3.5304 1.2421 22 6 2.0701 3.4478 1.3151 23 8 1.6633 2.0812 1.2217 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8534 0.9973 -1.0773 30 1 3.9996 0.8708 0.6933 31 1 5.9423 2.3534 -0.9928 32 1 5.9955 2.4143 0.7853 33 1 5.6827 4.7696 -0.9591 34 1 7.9045 3.7960 -1.1018 35 1 7.9584 3.8567 0.6764 36 1 7.6619 6.3171 0.6023 37 1 7.6080 6.2572 -1.1758 38 1 9.8961 5.3014 -1.2123 39 1 9.9493 5.3614 0.5659 40 1 13.1781 6.7978 -0.4717 41 1 4.0314 2.9988 2.0888 42 1 3.9069 4.5751 1.2688 43 1 1.6357 4.0136 0.4909 44 1 1.7282 3.8649 2.2624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309718207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:03 Heat of formation + Delta-G solvation = -108.092095 kcal Electronic energy + Delta-G solvation = -18798.079764 eV Core-core repulsion = 15940.748094 eV Total energy + Delta-G solvation = -2857.331670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61314 -38.00355 -35.99118 -34.85819 -34.60063 -32.56025 -30.71519 -28.86321 -26.88669 -24.78675 -24.23443 -23.46054 -22.08916 -21.68706 -20.87373 -18.48784 -17.39854 -17.06725 -16.61243 -16.57395 -16.02038 -15.55512 -15.51055 -15.28808 -14.54707 -14.41451 -14.35568 -14.15269 -13.76520 -13.37293 -13.19943 -12.99447 -12.68097 -12.63157 -12.50166 -12.45694 -12.23851 -12.02588 -11.91576 -11.70006 -11.57637 -11.44167 -11.32302 -11.18244 -10.99442 -10.56303 -10.31381 -9.35781 -8.21035 -6.32210 1.39566 1.41256 1.52610 2.40452 2.90369 3.11958 3.16166 3.72188 3.83348 3.93461 4.04025 4.21174 4.23746 4.29131 4.33026 4.43866 4.49137 4.54817 4.62212 4.69155 4.71631 4.74245 4.84455 4.93063 4.96824 4.98116 5.03708 5.09514 5.13080 5.20333 5.22186 5.24609 5.34881 5.45979 5.47121 5.51333 5.73889 5.84862 6.04704 6.26104 6.37642 6.49194 6.84843 7.37049 8.90956 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.061741 B = 0.002691 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.395475 B =10402.749572 C =10684.231078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.061 0.939 5 C -0.141 4.141 6 C -0.080 4.080 7 H 0.075 0.925 8 C 0.066 3.934 9 N -0.688 5.688 10 C 0.072 3.928 11 C -0.091 4.091 12 C 0.024 3.976 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.263 1.263 20 H -0.282 1.282 21 C -0.138 4.138 22 C 0.061 3.939 23 O -0.397 6.397 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.344 0.656 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.294 -11.666 -0.332 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.179 4.179 6 C -0.099 4.099 7 H 0.094 0.906 8 C -0.063 4.063 9 N -0.319 5.319 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.014 4.014 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.187 1.187 20 H -0.207 1.207 21 C -0.175 4.175 22 C -0.016 4.016 23 O -0.316 6.316 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.162 0.838 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.251 -11.714 0.499 26.040 hybrid contribution 1.280 0.613 -1.019 1.747 sum -21.971 -11.101 -0.520 24.622 Atomic orbital electron populations 1.21699 0.95055 1.01974 1.01795 1.21582 0.96877 0.93783 1.03133 1.22228 0.93279 0.94547 0.86786 0.92134 1.22224 0.96204 0.96268 1.03217 1.21140 0.93786 0.96457 0.98488 0.90646 1.21994 0.95025 0.88970 1.00310 1.60459 1.06527 1.15347 1.49583 1.21812 0.87640 0.96816 0.99413 1.21361 0.95731 0.95121 1.00702 1.18980 0.92144 0.95559 0.94668 1.21702 0.92314 0.93754 1.50314 0.92179 1.26029 0.97100 1.02221 0.94761 1.70104 1.01698 1.33974 1.51696 0.85413 0.77644 0.79208 0.78583 1.19645 1.18737 1.20709 1.22074 0.96020 1.02181 0.97267 1.22658 0.93809 0.82499 1.02625 1.87890 1.78861 1.25508 1.39374 0.92538 0.91840 0.93266 0.89195 0.91767 0.89816 0.91611 0.95043 0.91919 0.83817 0.96004 0.92361 0.92918 0.92993 0.99138 0.99164 0.92762 0.92538 0.90376 0.92629 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.81 71.98 0.71 -1.21 16 2 C -0.12 -1.59 5.64 30.59 0.17 -1.42 16 3 C 0.09 1.45 2.64 30.62 0.08 1.54 16 4 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 5 C -0.14 -2.33 4.70 30.68 0.14 -2.19 16 6 C -0.08 -1.51 2.42 -10.68 -0.03 -1.54 16 7 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 8 C 0.07 1.53 5.08 86.30 0.44 1.97 16 9 N -0.69 -19.05 6.04 -513.89 -3.11 -22.16 16 10 C 0.07 2.51 5.68 86.30 0.49 3.01 16 11 C -0.09 -3.82 5.41 30.59 0.17 -3.66 16 12 C 0.02 1.30 4.97 29.85 0.15 1.45 16 13 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 16 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 17 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.14 -2.75 5.27 30.68 0.16 -2.59 16 22 C 0.06 1.08 6.84 72.01 0.49 1.57 16 23 O -0.40 -8.03 9.94 -148.98 -1.48 -9.51 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.34 8.70 8.73 -89.70 -0.78 7.91 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 43 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -64.59 348.36 1.53 -63.05 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.14 Total: 13.38 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.67 Total: -34.13 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.82 Total: -79.61 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.48 Total: -9.51 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.59 1.53 -63.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.039 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds