Wall clock time and date at job start Mon Mar 30 2020 07:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46719 * 2 1 4 4 H 1.08995 * 109.48432 * 54.97845 * 3 2 1 5 5 C 1.53088 * 109.48141 * 175.00311 * 3 2 1 6 6 C 1.53170 * 109.16732 * 177.59193 * 5 3 2 7 7 H 1.09004 * 109.54603 * 183.06006 * 6 5 3 8 8 C 1.52999 * 109.54743 * 62.88447 * 6 5 3 9 9 N 1.46890 * 109.47676 * 175.00157 * 8 6 5 10 10 C 1.46901 * 111.00688 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.53175 * 109.03750 * 303.01547 * 6 5 3 22 22 C 1.53098 * 109.16181 * 56.97929 * 21 6 5 23 23 O 1.42900 * 109.41259 * 302.39565 * 22 21 6 24 24 H 1.08998 * 109.47232 * 299.99455 * 1 2 3 25 25 H 1.09000 * 109.47515 * 60.00219 * 1 2 3 26 26 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46617 * 240.00139 * 2 1 3 28 28 H 1.08999 * 109.46992 * 119.99759 * 2 1 3 29 29 H 1.08999 * 109.52308 * 57.68137 * 5 3 2 30 30 H 1.09005 * 109.57497 * 297.52975 * 5 3 2 31 31 H 1.09005 * 109.47077 * 54.99830 * 8 6 5 32 32 H 1.09002 * 109.46769 * 295.00541 * 8 6 5 33 33 H 1.00905 * 111.00280 * 303.95982 * 9 8 6 34 34 H 1.09002 * 109.46980 * 59.99769 * 10 9 8 35 35 H 1.09001 * 109.46628 * 300.00190 * 10 9 8 36 36 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 37 37 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.52477 * 176.88368 * 21 6 5 42 42 H 1.08999 * 109.52369 * 297.07952 * 21 6 5 43 43 H 1.08996 * 109.48191 * 182.40798 * 22 21 6 44 44 H 1.09006 * 109.47791 * 62.37363 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 0.8415 5 6 3.5656 1.4447 0.1257 6 6 4.0732 2.8886 0.0645 7 1 5.1627 2.8939 0.0988 8 6 3.5199 3.6766 1.2535 9 7 4.1015 5.0254 1.2604 10 6 3.5915 5.8130 2.3907 11 6 4.2179 7.2085 2.3640 12 6 3.6861 8.0289 3.5408 13 6 4.3037 9.4034 3.5148 14 1 5.0049 9.6657 2.7365 15 6 3.9726 10.3264 4.4841 16 7 3.1183 10.0071 5.4316 17 14 4.7375 12.0302 4.4514 18 1 3.8846 12.9403 3.6456 19 1 4.8452 12.5512 5.8379 20 1 6.0908 11.9538 3.8449 21 6 3.5968 3.5306 -1.2421 22 6 2.0698 3.4479 -1.3151 23 8 1.6632 2.0812 -1.2216 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9994 0.8710 -0.6933 30 1 3.8544 0.9972 1.0768 31 1 3.7784 3.1647 2.1805 32 1 2.4356 3.7488 1.1685 33 1 5.1096 4.9845 1.2734 34 1 3.8500 5.3161 3.3258 35 1 2.5077 5.9000 2.3131 36 1 3.9589 7.7052 1.4289 37 1 5.3016 7.1218 2.4412 38 1 3.9447 7.5325 4.4761 39 1 2.6024 8.1156 3.4631 40 1 2.8856 10.6564 6.1138 41 1 3.9067 4.5754 -1.2688 42 1 4.0312 2.9991 -2.0888 43 1 1.7280 3.8650 -2.2623 44 1 1.6353 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309718208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:06 Heat of formation + Delta-G solvation = -86.310051 kcal Electronic energy + Delta-G solvation = -19183.833978 eV Core-core repulsion = 16327.446848 eV Total energy + Delta-G solvation = -2856.387129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02936 -36.62887 -34.44472 -34.09557 -32.92337 -30.83214 -29.95142 -27.11555 -25.37122 -23.90775 -23.74750 -22.14658 -21.52087 -20.23169 -18.90274 -16.54468 -16.43677 -16.21678 -15.62500 -14.90396 -14.68693 -14.59100 -14.30330 -13.92403 -13.85305 -13.43446 -13.12226 -12.88137 -12.32611 -12.14564 -11.89723 -11.77879 -11.51381 -11.34873 -11.29547 -11.20580 -11.00062 -10.84248 -10.60567 -10.56599 -10.48198 -10.18523 -9.68986 -9.35789 -9.32290 -9.04524 -8.33691 -8.17065 -5.98797 -4.00882 3.32873 3.38817 3.42424 3.68707 4.28368 4.45283 4.48870 4.73724 4.76504 4.82704 4.94712 5.05180 5.18822 5.22524 5.31245 5.37006 5.41307 5.52798 5.57061 5.58363 5.69575 5.73560 5.78216 5.80731 5.87646 5.89853 6.00617 6.05587 6.12120 6.17505 6.20645 6.31989 6.71854 6.76806 7.14172 7.18960 7.33319 7.61801 7.69481 7.84411 8.01678 8.44945 9.06387 9.63075 11.12707 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039878 B = 0.003096 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.973287 B = 9042.550580 C = 9261.268347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.144 4.144 6 C -0.088 4.088 7 H 0.072 0.928 8 C 0.057 3.943 9 N -0.689 5.689 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.141 4.141 22 C 0.060 3.940 23 O -0.381 6.381 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.336 0.664 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 -19.835 -11.647 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.182 4.182 6 C -0.107 4.107 7 H 0.090 0.910 8 C -0.073 4.073 9 N -0.319 5.319 10 C -0.069 4.069 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.179 4.179 22 C -0.016 4.016 23 O -0.301 6.301 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.965 -19.606 -12.072 23.108 hybrid contribution 1.056 0.748 1.120 1.711 sum -0.909 -18.857 -10.953 21.826 Atomic orbital electron populations 1.21723 0.95299 1.01350 1.02407 1.21551 0.96724 0.94623 1.02457 1.22130 0.93467 0.93791 0.87516 0.92331 1.22226 0.96519 0.96933 1.02568 1.21186 1.00313 0.93764 0.95389 0.90955 1.22106 1.00028 0.89296 0.95834 1.60542 1.11885 1.13027 1.46492 1.22119 0.99981 0.94971 0.89860 1.21613 0.98869 0.92743 1.01191 1.19066 0.96379 0.94008 0.92129 1.21260 1.25660 0.97706 1.11079 0.92675 1.25035 0.95254 0.98735 0.95534 1.69968 1.33911 1.35081 1.14672 0.86591 0.79697 0.84544 0.77161 1.20640 1.21254 1.19890 1.22075 0.96440 1.02727 0.96669 1.22598 0.94369 0.82539 1.02115 1.87883 1.78773 1.25137 1.38284 0.92891 0.91897 0.92938 0.91292 0.90843 0.91028 0.91138 0.95596 0.91054 0.84634 0.95867 0.91631 0.92578 0.93693 0.96854 0.96610 0.93039 0.89327 0.91963 0.89193 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.81 37.16 0.36 -0.89 16 2 C -0.12 -0.97 5.64 -26.73 -0.15 -1.12 16 3 C 0.09 0.88 2.37 -26.69 -0.06 0.82 16 4 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 5 C -0.14 -1.33 4.92 -26.60 -0.13 -1.46 16 6 C -0.09 -0.90 2.83 -90.44 -0.26 -1.16 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 8 C 0.06 0.69 4.50 -3.83 -0.02 0.67 16 9 N -0.69 -9.80 5.93 -113.79 -0.68 -10.48 16 10 C 0.06 1.03 5.69 -3.83 -0.02 1.01 16 11 C -0.11 -2.21 5.41 -26.74 -0.14 -2.36 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C -0.14 -1.49 5.56 -26.59 -0.15 -1.64 16 22 C 0.06 0.66 6.57 37.21 0.24 0.90 16 23 O -0.38 -4.43 9.94 -35.23 -0.35 -4.78 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.91 5.03 -51.93 -0.26 0.65 16 33 H 0.34 4.51 8.73 -39.29 -0.34 4.17 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.09 1.02 7.70 -51.93 -0.40 0.62 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -30.13 341.68 -9.44 -39.57 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.40 Total: -1.25 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -0.87 Total: -18.53 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.06 Total: -37.03 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.35 Total: -4.78 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.13 -9.44 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.742 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds