Wall clock time and date at job start Mon Mar 30 2020 07:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46719 * 2 1 4 4 H 1.08995 * 109.48432 * 54.97845 * 3 2 1 5 5 C 1.53088 * 109.48141 * 175.00311 * 3 2 1 6 6 C 1.53170 * 109.16732 * 177.59193 * 5 3 2 7 7 H 1.09004 * 109.54603 * 183.06006 * 6 5 3 8 8 C 1.52999 * 109.54743 * 62.88447 * 6 5 3 9 9 N 1.46890 * 109.47676 * 175.00157 * 8 6 5 10 10 C 1.46901 * 111.00688 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.53175 * 109.03750 * 303.01547 * 6 5 3 22 22 C 1.53098 * 109.16181 * 56.97929 * 21 6 5 23 23 O 1.42900 * 109.41259 * 302.39565 * 22 21 6 24 24 H 1.08998 * 109.47232 * 299.99455 * 1 2 3 25 25 H 1.09000 * 109.47515 * 60.00219 * 1 2 3 26 26 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46617 * 240.00139 * 2 1 3 28 28 H 1.08999 * 109.46992 * 119.99759 * 2 1 3 29 29 H 1.08999 * 109.52308 * 57.68137 * 5 3 2 30 30 H 1.09005 * 109.57497 * 297.52975 * 5 3 2 31 31 H 1.09005 * 109.47077 * 54.99830 * 8 6 5 32 32 H 1.09002 * 109.46769 * 295.00541 * 8 6 5 33 33 H 1.00905 * 111.00280 * 303.95982 * 9 8 6 34 34 H 1.09002 * 109.46980 * 59.99769 * 10 9 8 35 35 H 1.09001 * 109.46628 * 300.00190 * 10 9 8 36 36 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 37 37 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.52477 * 176.88368 * 21 6 5 42 42 H 1.08999 * 109.52369 * 297.07952 * 21 6 5 43 43 H 1.08996 * 109.48191 * 182.40798 * 22 21 6 44 44 H 1.09006 * 109.47791 * 62.37363 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 0.8415 5 6 3.5656 1.4447 0.1257 6 6 4.0732 2.8886 0.0645 7 1 5.1627 2.8939 0.0988 8 6 3.5199 3.6766 1.2535 9 7 4.1015 5.0254 1.2604 10 6 3.5915 5.8130 2.3907 11 6 4.2179 7.2085 2.3640 12 6 3.6861 8.0289 3.5408 13 6 4.3037 9.4034 3.5148 14 1 5.0049 9.6657 2.7365 15 6 3.9726 10.3264 4.4841 16 7 3.1183 10.0071 5.4316 17 14 4.7375 12.0302 4.4514 18 1 3.8846 12.9403 3.6456 19 1 4.8452 12.5512 5.8379 20 1 6.0908 11.9538 3.8449 21 6 3.5968 3.5306 -1.2421 22 6 2.0698 3.4479 -1.3151 23 8 1.6632 2.0812 -1.2216 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9994 0.8710 -0.6933 30 1 3.8544 0.9972 1.0768 31 1 3.7784 3.1647 2.1805 32 1 2.4356 3.7488 1.1685 33 1 5.1096 4.9845 1.2734 34 1 3.8500 5.3161 3.3258 35 1 2.5077 5.9000 2.3131 36 1 3.9589 7.7052 1.4289 37 1 5.3016 7.1218 2.4412 38 1 3.9447 7.5325 4.4761 39 1 2.6024 8.1156 3.4631 40 1 2.8856 10.6564 6.1138 41 1 3.9067 4.5754 -1.2688 42 1 4.0312 2.9991 -2.0888 43 1 1.7280 3.8650 -2.2623 44 1 1.6353 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309718208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:06 Heat of formation + Delta-G solvation = -104.378853 kcal Electronic energy + Delta-G solvation = -19184.617500 eV Core-core repulsion = 16327.446848 eV Total energy + Delta-G solvation = -2857.170651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87194 -37.85895 -35.93525 -34.85650 -34.59157 -32.54164 -30.71299 -28.69576 -26.63765 -25.10818 -24.58082 -23.70317 -22.28818 -21.93804 -19.83495 -18.48756 -17.35579 -17.25114 -16.77608 -16.56578 -15.82914 -15.65095 -15.62766 -15.13078 -14.63016 -14.46842 -14.21756 -14.06176 -13.78218 -13.68882 -13.29396 -12.84024 -12.68367 -12.55877 -12.47927 -12.46982 -12.26704 -12.04641 -12.01347 -11.76658 -11.56732 -11.41399 -11.36094 -11.14284 -10.92616 -10.56379 -10.19608 -9.36401 -8.21106 -6.32290 1.39611 1.41195 1.52338 2.40399 2.90010 3.12035 3.19129 3.67565 3.88529 3.92741 4.02454 4.19529 4.22363 4.26102 4.32682 4.42298 4.48418 4.50129 4.65146 4.66063 4.71155 4.75256 4.79119 4.95369 4.97164 5.03056 5.06430 5.10911 5.16808 5.19229 5.22993 5.24794 5.33355 5.37699 5.45395 5.51268 5.73905 5.84889 6.04278 6.26030 6.37049 6.48750 6.84843 7.37099 8.90941 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039878 B = 0.003096 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.973287 B = 9042.550580 C = 9261.268347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.083 3.917 4 H 0.049 0.951 5 C -0.139 4.139 6 C -0.083 4.083 7 H 0.081 0.919 8 C 0.060 3.940 9 N -0.686 5.686 10 C 0.073 3.927 11 C -0.091 4.091 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.137 4.137 22 C 0.059 3.941 23 O -0.394 6.394 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -20.407 -12.446 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.025 3.975 4 H 0.067 0.933 5 C -0.177 4.177 6 C -0.102 4.102 7 H 0.100 0.900 8 C -0.069 4.069 9 N -0.317 5.317 10 C -0.056 4.056 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.175 4.175 22 C -0.017 4.017 23 O -0.313 6.313 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.789 -20.196 -12.887 23.970 hybrid contribution 0.651 0.887 1.373 1.759 sum -0.138 -19.309 -11.515 22.482 Atomic orbital electron populations 1.21716 0.95493 1.01991 1.01552 1.21576 0.96566 0.93654 1.03349 1.22273 0.94133 0.94452 0.86602 0.93330 1.22193 0.95760 0.96135 1.03576 1.21163 1.00738 0.94141 0.94170 0.90041 1.22120 0.99552 0.88219 0.97011 1.60443 1.12501 1.14174 1.44619 1.21804 0.99231 0.93573 0.91023 1.21357 0.99150 0.93932 0.98451 1.18975 0.94808 0.94196 0.93324 1.21707 1.26012 0.99010 1.11403 0.92180 1.26011 0.95637 1.03353 0.94987 1.70099 1.35199 1.36757 1.15434 0.85428 0.79161 0.78882 0.77474 1.19750 1.20666 1.18672 1.22023 0.96008 1.02251 0.97189 1.22605 0.94738 0.82382 1.01994 1.87874 1.79123 1.25245 1.39100 0.93200 0.93293 0.91561 0.91056 0.89204 0.90266 0.89871 0.95174 0.91881 0.83729 0.96067 0.92457 0.92860 0.93003 0.99156 0.99182 0.92753 0.90309 0.91103 0.88459 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.81 71.98 0.71 -1.64 16 2 C -0.11 -1.72 5.64 30.59 0.17 -1.54 16 3 C 0.08 1.54 2.37 30.62 0.07 1.61 16 4 H 0.05 1.00 6.72 -2.39 -0.02 0.98 16 5 C -0.14 -2.25 4.92 30.68 0.15 -2.10 16 6 C -0.08 -1.56 2.83 -10.68 -0.03 -1.59 16 7 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 8 C 0.06 1.38 4.50 86.30 0.39 1.77 16 9 N -0.69 -18.77 5.93 -513.91 -3.05 -21.82 16 10 C 0.07 2.52 5.69 86.30 0.49 3.01 16 11 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16 12 C 0.02 1.32 4.97 29.85 0.15 1.47 16 13 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 16 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 17 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.14 -2.70 5.56 30.69 0.17 -2.53 16 22 C 0.06 1.26 6.57 72.01 0.47 1.74 16 23 O -0.39 -8.82 9.94 -148.98 -1.48 -10.30 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 26 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 1.58 5.03 -2.39 -0.01 1.57 16 33 H 0.34 8.63 8.73 -89.69 -0.78 7.84 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.08 1.72 7.70 -2.39 -0.02 1.70 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.00 6.49 -2.38 -0.02 0.98 16 Total: -1.00 -64.27 341.68 1.54 -62.73 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.15 Total: 14.42 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.60 Total: -34.39 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -2.76 Total: -79.22 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.48 Total: -10.30 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.27 1.54 -62.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.647 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds