Wall clock time and date at job start Mon Mar 30 2020 07:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 H 1.09003 * 109.48458 * 305.02581 * 3 2 1 5 5 C 1.53086 * 109.48132 * 184.99713 * 3 2 1 6 6 C 1.53172 * 109.16710 * 297.61547 * 5 3 2 7 7 H 1.09005 * 109.54090 * 62.97324 * 6 5 3 8 8 C 1.52999 * 109.55007 * 183.15111 * 6 5 3 9 9 N 1.46890 * 109.47676 * 185.00060 * 8 6 5 10 10 C 1.46901 * 111.00688 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.53182 * 109.03764 * 303.02200 * 6 5 3 22 22 C 1.53088 * 109.16571 * 56.97429 * 21 6 5 23 23 O 1.42904 * 109.41561 * 302.39533 * 22 21 6 24 24 H 1.08996 * 109.47546 * 60.00288 * 1 2 3 25 25 H 1.09005 * 109.46807 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47692 * 300.00178 * 1 2 3 27 27 H 1.09000 * 109.47234 * 240.00093 * 2 1 3 28 28 H 1.09002 * 109.47195 * 119.99436 * 2 1 3 29 29 H 1.09002 * 109.52642 * 177.70711 * 5 3 2 30 30 H 1.09005 * 109.52148 * 57.52524 * 5 3 2 31 31 H 1.09005 * 109.47077 * 64.99733 * 8 6 5 32 32 H 1.09002 * 109.46769 * 305.00444 * 8 6 5 33 33 H 1.00905 * 111.00280 * 303.95982 * 9 8 6 34 34 H 1.09002 * 109.46980 * 59.99769 * 10 9 8 35 35 H 1.09001 * 109.46628 * 300.00190 * 10 9 8 36 36 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 37 37 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.52278 * 176.89005 * 21 6 5 42 42 H 1.09005 * 109.51742 * 297.06761 * 21 6 5 43 43 H 1.08992 * 109.48185 * 182.41385 * 22 21 6 44 44 H 1.08999 * 109.48618 * 62.37919 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9819 -0.8415 5 6 3.5656 1.4447 -0.1257 6 6 4.1714 0.7378 1.0906 7 1 3.8517 -0.3042 1.1035 8 6 5.6980 0.8037 1.0133 9 7 6.2783 0.0241 2.1147 10 6 7.7462 0.0642 2.0720 11 6 8.3129 -0.7576 3.2314 12 6 9.8417 -0.7163 3.1865 13 6 10.3998 -1.5253 4.3289 14 1 9.7311 -2.0199 5.0178 15 6 11.7643 -1.6350 4.4939 16 7 12.2514 -2.3414 5.4906 17 14 12.9210 -0.7802 3.3019 18 1 13.2210 0.5870 3.7978 19 1 14.1828 -1.5557 3.1946 20 1 12.2787 -0.6924 1.9659 21 6 3.6922 1.4385 2.3657 22 6 2.1616 1.4366 2.3953 23 8 1.6630 2.0815 1.2215 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9263 2.4725 -0.1668 30 1 3.8569 0.9189 -1.0351 31 1 6.0214 1.8417 1.0931 32 1 6.0317 0.3915 0.0610 33 1 5.9333 0.3458 3.0066 34 1 8.0841 1.0968 2.1589 35 1 8.0937 -0.3535 1.1271 36 1 7.9750 -1.7903 3.1440 37 1 7.9653 -0.3404 4.1764 38 1 10.1800 0.3162 3.2735 39 1 10.1888 -1.1339 2.2413 40 1 13.2113 -2.4183 5.6069 41 1 4.0741 0.9083 3.2382 42 1 4.0555 2.4662 2.3751 43 1 1.8145 1.9716 3.2791 44 1 1.7998 0.4089 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309718209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:09 Heat of formation + Delta-G solvation = -82.214374 kcal Electronic energy + Delta-G solvation = -19088.636980 eV Core-core repulsion = 16232.427452 eV Total energy + Delta-G solvation = -2856.209527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24787 -36.92607 -34.54567 -33.72586 -32.85277 -31.11406 -30.47246 -27.69410 -25.61450 -23.83428 -23.47890 -22.06046 -21.56031 -20.04177 -19.31669 -16.88860 -16.62230 -16.17826 -16.02587 -15.07621 -14.95606 -14.46698 -14.18713 -13.92279 -13.79578 -13.60410 -13.26010 -12.95158 -12.60450 -12.37273 -12.05249 -11.83865 -11.79834 -11.69051 -11.43283 -11.22719 -11.03349 -10.91786 -10.75700 -10.64998 -10.22647 -9.93579 -9.73699 -9.66654 -9.46604 -9.15654 -8.52331 -8.24669 -6.02671 -4.00332 3.31208 3.38553 3.42593 3.62507 4.21322 4.44158 4.46515 4.52775 4.65913 4.68573 4.80330 4.93475 5.08978 5.12793 5.23732 5.29955 5.31281 5.41138 5.45952 5.51283 5.60279 5.63168 5.69377 5.71287 5.73810 5.79346 5.81652 5.94781 5.98090 6.01496 6.17651 6.22102 6.55434 6.58848 6.92514 7.01416 7.21745 7.36356 7.44890 7.56977 7.81976 8.56674 9.02887 9.60011 11.10947 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.048432 B = 0.002986 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.994356 B = 9375.268123 C = 9511.184365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.092 3.908 4 H 0.099 0.901 5 C -0.144 4.144 6 C -0.088 4.088 7 H 0.083 0.917 8 C 0.064 3.936 9 N -0.691 5.691 10 C 0.056 3.944 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.153 4.153 22 C 0.058 3.942 23 O -0.377 6.377 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.337 0.663 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.009 0.991 39 H 0.015 0.985 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.345 8.438 -11.991 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C 0.034 3.966 4 H 0.117 0.883 5 C -0.183 4.183 6 C -0.107 4.107 7 H 0.101 0.899 8 C -0.066 4.066 9 N -0.322 5.322 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.191 4.191 22 C -0.019 4.019 23 O -0.296 6.296 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.322 7.944 -12.244 26.670 hybrid contribution 1.219 1.057 -0.220 1.629 sum -21.103 9.002 -12.464 26.110 Atomic orbital electron populations 1.21704 0.95291 1.01416 1.02160 1.22204 0.96844 0.97416 1.03216 1.22204 0.93686 0.93215 0.87519 0.88325 1.22217 0.95709 1.01633 0.98704 1.21238 0.94906 1.00296 0.94222 0.89855 1.21966 0.93335 0.95435 0.95850 1.60548 1.07900 1.57723 1.06052 1.22147 0.85809 0.98420 1.00852 1.21440 0.97501 0.99393 0.95392 1.19544 0.91585 0.96442 0.97520 1.21157 0.92296 1.30818 1.11404 0.91027 1.25048 0.98336 0.95000 0.95248 1.69920 1.12873 1.41002 1.30602 0.86760 0.80342 0.79696 0.82366 1.20381 1.21398 1.19039 1.22266 0.96589 1.01507 0.98749 1.22571 0.93179 0.98050 0.88101 1.87969 1.74664 1.53226 1.13698 0.92861 0.92877 0.92257 0.90983 0.90881 0.91157 0.90807 0.95602 0.91178 0.84433 0.95878 0.91546 0.91945 0.93109 0.97319 0.96628 0.92780 0.90447 0.91363 0.89100 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.69 16 2 C -0.16 -1.21 4.74 -26.73 -0.13 -1.34 16 3 C 0.09 0.76 3.29 -26.69 -0.09 0.67 16 4 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.14 -1.22 4.92 -26.60 -0.13 -1.35 16 6 C -0.09 -0.85 2.17 -90.44 -0.20 -1.04 16 7 H 0.08 0.86 6.74 -51.93 -0.35 0.51 16 8 C 0.06 0.74 5.15 -3.83 -0.02 0.72 16 9 N -0.69 -9.63 6.50 -113.79 -0.74 -10.37 16 10 C 0.06 0.93 5.69 -3.83 -0.02 0.91 16 11 C -0.10 -2.00 5.41 -26.74 -0.14 -2.14 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 17 Si 0.88 22.04 27.47 -169.99 -4.67 17.38 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 C -0.15 -1.42 5.12 -26.59 -0.14 -1.56 16 22 C 0.06 0.50 6.52 37.20 0.24 0.75 16 23 O -0.38 -3.78 10.13 -35.23 -0.36 -4.14 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.60 4.98 -51.93 -0.26 0.34 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.34 4.43 7.09 -39.29 -0.28 4.15 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.08 0.72 6.85 -51.93 -0.36 0.36 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.45 6.23 -51.93 -0.32 0.13 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -30.91 335.58 -8.98 -39.89 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.24 Total: -1.14 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.80 Total: -19.12 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.03 Total: -37.92 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.36 Total: -4.14 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.91 -8.98 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.329 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds