Wall clock time and date at job start Mon Mar 30 2020 07:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 H 1.09003 * 109.48458 * 305.02581 * 3 2 1 5 5 C 1.53086 * 109.48132 * 184.99713 * 3 2 1 6 6 C 1.53172 * 109.16710 * 297.61547 * 5 3 2 7 7 H 1.09005 * 109.54090 * 62.97324 * 6 5 3 8 8 C 1.52999 * 109.55007 * 183.15111 * 6 5 3 9 9 N 1.46890 * 109.47676 * 185.00060 * 8 6 5 10 10 C 1.46901 * 111.00688 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.53182 * 109.03764 * 303.02200 * 6 5 3 22 22 C 1.53088 * 109.16571 * 56.97429 * 21 6 5 23 23 O 1.42904 * 109.41561 * 302.39533 * 22 21 6 24 24 H 1.08996 * 109.47546 * 60.00288 * 1 2 3 25 25 H 1.09005 * 109.46807 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47692 * 300.00178 * 1 2 3 27 27 H 1.09000 * 109.47234 * 240.00093 * 2 1 3 28 28 H 1.09002 * 109.47195 * 119.99436 * 2 1 3 29 29 H 1.09002 * 109.52642 * 177.70711 * 5 3 2 30 30 H 1.09005 * 109.52148 * 57.52524 * 5 3 2 31 31 H 1.09005 * 109.47077 * 64.99733 * 8 6 5 32 32 H 1.09002 * 109.46769 * 305.00444 * 8 6 5 33 33 H 1.00905 * 111.00280 * 303.95982 * 9 8 6 34 34 H 1.09002 * 109.46980 * 59.99769 * 10 9 8 35 35 H 1.09001 * 109.46628 * 300.00190 * 10 9 8 36 36 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 37 37 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.52278 * 176.89005 * 21 6 5 42 42 H 1.09005 * 109.51742 * 297.06761 * 21 6 5 43 43 H 1.08992 * 109.48185 * 182.41385 * 22 21 6 44 44 H 1.08999 * 109.48618 * 62.37919 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9819 -0.8415 5 6 3.5656 1.4447 -0.1257 6 6 4.1714 0.7378 1.0906 7 1 3.8517 -0.3042 1.1035 8 6 5.6980 0.8037 1.0133 9 7 6.2783 0.0241 2.1147 10 6 7.7462 0.0642 2.0720 11 6 8.3129 -0.7576 3.2314 12 6 9.8417 -0.7163 3.1865 13 6 10.3998 -1.5253 4.3289 14 1 9.7311 -2.0199 5.0178 15 6 11.7643 -1.6350 4.4939 16 7 12.2514 -2.3414 5.4906 17 14 12.9210 -0.7802 3.3019 18 1 13.2210 0.5870 3.7978 19 1 14.1828 -1.5557 3.1946 20 1 12.2787 -0.6924 1.9659 21 6 3.6922 1.4385 2.3657 22 6 2.1616 1.4366 2.3953 23 8 1.6630 2.0815 1.2215 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9263 2.4725 -0.1668 30 1 3.8569 0.9189 -1.0351 31 1 6.0214 1.8417 1.0931 32 1 6.0317 0.3915 0.0610 33 1 5.9333 0.3458 3.0066 34 1 8.0841 1.0968 2.1589 35 1 8.0937 -0.3535 1.1271 36 1 7.9750 -1.7903 3.1440 37 1 7.9653 -0.3404 4.1764 38 1 10.1800 0.3162 3.2735 39 1 10.1888 -1.1339 2.2413 40 1 13.2113 -2.4183 5.6069 41 1 4.0741 0.9083 3.2382 42 1 4.0555 2.4662 2.3751 43 1 1.8145 1.9716 3.2791 44 1 1.7998 0.4089 2.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309718209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:09 Heat of formation + Delta-G solvation = -101.879251 kcal Electronic energy + Delta-G solvation = -19089.489713 eV Core-core repulsion = 16232.427452 eV Total energy + Delta-G solvation = -2857.062261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95592 -38.05011 -35.98495 -34.61314 -34.30134 -32.77346 -31.12765 -29.12262 -26.89174 -24.63888 -24.32084 -23.48847 -22.44489 -21.73611 -20.01888 -18.91670 -17.48794 -17.12181 -16.86131 -16.44333 -15.97517 -15.69074 -15.49091 -15.01906 -14.77149 -14.62617 -14.43655 -14.19973 -13.69767 -13.56913 -13.34246 -12.97764 -12.88157 -12.60632 -12.54599 -12.45407 -12.12337 -11.90030 -11.80835 -11.70893 -11.56938 -11.48622 -11.37026 -11.26613 -10.84984 -10.77067 -10.27893 -9.36210 -8.30075 -6.34479 1.35233 1.37577 1.49889 2.35959 2.96534 3.05091 3.20000 3.78019 3.78674 3.85159 4.04998 4.11950 4.19752 4.29258 4.29755 4.42139 4.45544 4.51132 4.64313 4.67183 4.67995 4.81209 4.84345 4.87728 4.91482 4.95110 4.97633 5.02777 5.08693 5.10262 5.15354 5.21470 5.34991 5.40850 5.47046 5.51862 5.60017 5.65787 6.09475 6.29057 6.34904 6.46850 6.73896 7.30144 8.86990 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.048432 B = 0.002986 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.994356 B = 9375.268123 C = 9511.184365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.089 3.911 4 H 0.109 0.891 5 C -0.140 4.140 6 C -0.082 4.082 7 H 0.078 0.922 8 C 0.066 3.934 9 N -0.695 5.695 10 C 0.069 3.931 11 C -0.091 4.091 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.029 0.971 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.245 1.245 21 C -0.151 4.151 22 C 0.057 3.943 23 O -0.392 6.392 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 9.749 -14.100 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.032 3.968 4 H 0.126 0.874 5 C -0.178 4.178 6 C -0.100 4.100 7 H 0.097 0.903 8 C -0.063 4.063 9 N -0.327 5.327 10 C -0.060 4.060 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.169 1.169 21 C -0.189 4.189 22 C -0.019 4.019 23 O -0.312 6.312 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.757 9.262 -14.359 28.458 hybrid contribution 1.273 0.592 0.514 1.495 sum -21.483 9.854 -13.845 27.392 Atomic orbital electron populations 1.21688 0.95000 1.01710 1.02012 1.22181 0.97081 0.96931 1.03228 1.22316 0.93571 0.93675 0.87254 0.87374 1.22186 0.95757 1.01378 0.98492 1.21164 0.93584 1.00243 0.95039 0.90331 1.22007 0.94374 0.95064 0.94864 1.60488 1.06371 1.58720 1.07137 1.21883 0.87342 0.97839 0.98946 1.21265 0.95069 0.99480 0.97072 1.19492 0.94130 0.95772 0.95430 1.21527 0.92266 1.31166 1.12290 0.95229 1.26087 1.00415 0.95789 0.97306 1.70079 1.13573 1.42845 1.32885 0.85590 0.77638 0.78633 0.80361 1.19095 1.20924 1.16883 1.22235 0.97014 1.01073 0.98548 1.22612 0.92724 0.98374 0.88183 1.87951 1.74935 1.53866 1.14401 0.92220 0.92383 0.93179 0.90140 0.91654 0.91450 0.89719 0.95404 0.91017 0.83944 0.95225 0.91277 0.93259 0.93529 0.96358 0.96146 0.92479 0.90609 0.91851 0.88328 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.17 16 2 C -0.16 -2.11 4.74 30.59 0.15 -1.97 16 3 C 0.09 1.32 3.29 30.62 0.10 1.42 16 4 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.14 -2.09 4.92 30.68 0.15 -1.94 16 6 C -0.08 -1.43 2.17 -10.68 -0.02 -1.46 16 7 H 0.08 1.49 6.74 -2.38 -0.02 1.47 16 8 C 0.07 1.39 5.15 86.30 0.44 1.83 16 9 N -0.70 -18.21 6.50 -513.91 -3.34 -21.55 16 10 C 0.07 2.14 5.69 86.30 0.49 2.63 16 11 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 12 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 13 C -0.53 -31.65 9.66 25.60 0.25 -31.40 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 15 C 0.00 0.03 5.47 84.66 0.46 0.49 16 16 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 17 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 21 C -0.15 -2.60 5.12 30.68 0.16 -2.44 16 22 C 0.06 0.94 6.52 72.01 0.47 1.41 16 23 O -0.39 -7.32 10.13 -148.98 -1.51 -8.83 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.05 0.73 7.83 -2.39 -0.02 0.71 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.99 4.98 -2.39 -0.01 0.97 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.34 8.49 7.09 -89.69 -0.64 7.86 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 39 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.08 1.32 6.85 -2.39 -0.02 1.30 16 42 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 0.90 6.23 -2.39 -0.01 0.89 16 Total: -1.00 -66.37 335.58 1.22 -65.14 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.25 Total: 15.56 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.64 Total: -36.39 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.04 Total: -82.15 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.51 Total: -8.83 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -66.37 1.22 -65.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.734 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds