Wall clock time and date at job start Mon Mar 30 2020 07:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46845 * 2 1 4 4 H 1.09003 * 109.48316 * 55.03159 * 3 2 1 5 5 C 1.53108 * 109.47736 * 174.97191 * 3 2 1 6 6 C 1.53182 * 109.15341 * 177.50454 * 5 3 2 7 7 H 1.09000 * 109.54227 * 63.06764 * 6 5 3 8 8 C 1.53007 * 109.54126 * 183.23842 * 6 5 3 9 9 N 1.46901 * 109.46960 * 184.82344 * 8 6 5 10 10 C 1.46902 * 110.99844 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.53174 * 109.11167 * 303.15140 * 6 5 3 22 22 C 1.53093 * 109.16035 * 56.93490 * 21 6 5 23 23 O 1.42897 * 109.48298 * 295.00242 * 3 2 1 24 24 H 1.08993 * 109.47020 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46701 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47310 * 59.99530 * 1 2 3 27 27 H 1.09000 * 109.46701 * 240.00096 * 2 1 3 28 28 H 1.08997 * 109.47310 * 120.00470 * 2 1 3 29 29 H 1.08997 * 109.45652 * 57.64171 * 5 3 2 30 30 H 1.09000 * 109.59685 * 297.44667 * 5 3 2 31 31 H 1.08992 * 109.46843 * 64.82463 * 8 6 5 32 32 H 1.09000 * 109.46777 * 304.82281 * 8 6 5 33 33 H 1.00894 * 110.99685 * 303.95558 * 9 8 6 34 34 H 1.08998 * 109.46869 * 60.00380 * 10 9 8 35 35 H 1.08994 * 109.47040 * 300.00083 * 10 9 8 36 36 H 1.09004 * 109.46806 * 60.00264 * 11 10 9 37 37 H 1.09000 * 109.47828 * 300.00569 * 11 10 9 38 38 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 39 39 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 40 40 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.52410 * 176.84381 * 21 6 5 42 42 H 1.09001 * 109.52148 * 296.96963 * 21 6 5 43 43 H 1.08998 * 109.48245 * 62.38103 * 22 21 6 44 44 H 1.09002 * 109.47734 * 182.39674 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9816 0.8421 5 6 3.5658 1.4446 0.1265 6 6 4.0734 2.8885 0.0630 7 1 3.6814 3.4504 0.9108 8 6 5.6028 2.8957 0.1075 9 7 6.0845 4.2824 0.1631 10 6 7.5521 4.3285 0.2075 11 6 8.0151 5.7857 0.2640 12 6 9.5436 5.8337 0.3096 13 6 9.9996 7.2690 0.3659 14 1 9.2719 8.0671 0.3692 15 6 11.3456 7.5631 0.4194 16 7 11.7434 8.8155 0.4740 17 14 12.6042 6.1827 0.4144 18 1 12.9831 5.8635 -0.9855 19 1 13.8101 6.6097 1.1685 20 1 12.0199 4.9778 1.0561 21 6 3.5957 3.5311 -1.2428 22 6 2.0687 3.4484 -1.3142 23 8 1.6620 2.0816 -1.2209 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9988 0.8699 -0.6922 30 1 3.8544 0.9986 1.0783 31 1 5.9946 2.4106 -0.7864 32 1 5.9431 2.3572 0.9920 33 1 5.7288 4.8200 -0.6131 34 1 7.9578 3.8532 -0.6856 35 1 7.9056 3.8000 1.0928 36 1 7.6094 6.2614 1.1569 37 1 7.6616 6.3139 -0.6215 38 1 9.9489 5.3581 -0.5835 39 1 9.8975 5.3055 1.1949 40 1 12.6903 9.0224 0.5113 41 1 3.9056 4.5757 -1.2694 42 1 4.0302 3.0005 -2.0901 43 1 1.6350 4.0138 -0.4894 44 1 1.7260 3.8660 -2.2609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309718210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:12 Heat of formation + Delta-G solvation = -86.013236 kcal Electronic energy + Delta-G solvation = -18853.951210 eV Core-core repulsion = 15997.576951 eV Total energy + Delta-G solvation = -2856.374258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92605 -36.93189 -34.59177 -34.22971 -32.88666 -31.12842 -30.11368 -27.71956 -25.68040 -23.92166 -23.19751 -21.96262 -21.13689 -20.33803 -19.82506 -16.76205 -16.68312 -16.21464 -15.95577 -15.01028 -14.85819 -14.48639 -14.17009 -13.96306 -13.91525 -13.50062 -13.37473 -13.12407 -12.56795 -12.09575 -11.99346 -11.91527 -11.76390 -11.70205 -11.39373 -11.27835 -11.03031 -10.93649 -10.75350 -10.61424 -10.41684 -9.94611 -9.75535 -9.69901 -9.47370 -9.15622 -8.52255 -8.25071 -6.02589 -4.00239 3.31246 3.38547 3.42590 3.53183 4.13382 4.46527 4.48645 4.59419 4.65497 4.68955 4.84217 4.91665 5.05192 5.13980 5.22904 5.26555 5.31283 5.40662 5.46423 5.52162 5.60960 5.63472 5.66280 5.70920 5.74801 5.80005 5.81633 5.88439 5.96768 6.01852 6.17373 6.20117 6.55405 6.58661 6.92442 7.02497 7.21389 7.36282 7.44841 7.56735 7.81997 8.56703 9.02931 9.60035 11.10976 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.055681 B = 0.002840 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.743458 B = 9857.217706 C =10177.136285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.144 4.144 6 C -0.088 4.088 7 H 0.080 0.920 8 C 0.064 3.936 9 N -0.691 5.691 10 C 0.056 3.944 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.154 4.154 22 C 0.063 3.937 23 O -0.380 6.380 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.337 0.663 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.009 0.991 39 H 0.015 0.985 40 H 0.262 0.738 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 -17.566 -1.879 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.183 4.183 6 C -0.107 4.107 7 H 0.099 0.901 8 C -0.065 4.065 9 N -0.322 5.322 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.192 4.192 22 C -0.013 4.013 23 O -0.299 6.299 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.172 -17.503 -1.326 27.502 hybrid contribution 1.305 -0.634 -0.735 1.626 sum -19.868 -18.137 -2.060 26.980 Atomic orbital electron populations 1.21720 0.95317 1.01426 1.02266 1.21552 0.96654 0.94515 1.02679 1.22125 0.93510 0.93865 0.87167 0.92498 1.22246 0.96033 0.97126 1.02864 1.21222 0.95473 0.95704 0.98261 0.90115 1.21955 0.93685 0.90607 1.00270 1.60553 1.10346 1.11210 1.50139 1.22148 0.85766 0.99514 0.99795 1.21442 0.98064 0.92683 1.01543 1.19545 0.91575 0.97897 0.96086 1.21156 0.92811 0.91284 1.50409 0.91027 1.25054 0.98583 0.95367 0.94661 1.69919 1.15639 1.17586 1.51227 0.86759 0.80984 0.83063 0.78347 1.20383 1.21397 1.19043 1.22275 0.96668 1.02040 0.98193 1.22538 0.93893 0.82914 1.01987 1.87902 1.78581 1.24833 1.38605 0.92868 0.92968 0.91947 0.91183 0.90686 0.91130 0.90808 0.95566 0.91144 0.84421 0.95875 0.91530 0.91937 0.93104 0.97310 0.96629 0.92784 0.90364 0.91312 0.93177 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.68 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.09 0.79 2.64 -26.68 -0.07 0.72 16 4 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.14 -1.25 4.71 -26.58 -0.13 -1.38 16 6 C -0.09 -0.86 2.48 -90.43 -0.22 -1.09 16 7 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.06 0.75 5.15 -3.82 -0.02 0.73 16 9 N -0.69 -9.69 6.50 -113.78 -0.74 -10.43 16 10 C 0.06 0.93 5.69 -3.83 -0.02 0.91 16 11 C -0.10 -2.00 5.41 -26.74 -0.14 -2.15 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 17 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 C -0.15 -1.44 5.12 -26.59 -0.14 -1.58 16 22 C 0.06 0.56 6.84 37.21 0.25 0.82 16 23 O -0.38 -3.87 9.94 -35.23 -0.35 -4.22 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.34 4.45 7.07 -39.29 -0.28 4.17 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.01 0.21 7.58 -51.93 -0.39 -0.19 16 39 H 0.02 0.38 7.19 -51.93 -0.37 0.00 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.08 0.73 6.84 -51.93 -0.36 0.37 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -30.96 342.51 -9.22 -40.18 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.58 Total: -1.78 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.82 Total: -18.76 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.03 Total: -37.96 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.35 Total: -4.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.96 -9.22 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.831 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds