Wall clock time and date at job start Mon Mar 30 2020 07:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46845 * 2 1 4 4 H 1.09003 * 109.48316 * 55.03159 * 3 2 1 5 5 C 1.53108 * 109.47736 * 174.97191 * 3 2 1 6 6 C 1.53182 * 109.15341 * 177.50454 * 5 3 2 7 7 H 1.09000 * 109.54227 * 63.06764 * 6 5 3 8 8 C 1.53007 * 109.54126 * 183.23842 * 6 5 3 9 9 N 1.46901 * 109.46960 * 184.82344 * 8 6 5 10 10 C 1.46902 * 110.99844 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.53174 * 109.11167 * 303.15140 * 6 5 3 22 22 C 1.53093 * 109.16035 * 56.93490 * 21 6 5 23 23 O 1.42897 * 109.48298 * 295.00242 * 3 2 1 24 24 H 1.08993 * 109.47020 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46701 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47310 * 59.99530 * 1 2 3 27 27 H 1.09000 * 109.46701 * 240.00096 * 2 1 3 28 28 H 1.08997 * 109.47310 * 120.00470 * 2 1 3 29 29 H 1.08997 * 109.45652 * 57.64171 * 5 3 2 30 30 H 1.09000 * 109.59685 * 297.44667 * 5 3 2 31 31 H 1.08992 * 109.46843 * 64.82463 * 8 6 5 32 32 H 1.09000 * 109.46777 * 304.82281 * 8 6 5 33 33 H 1.00894 * 110.99685 * 303.95558 * 9 8 6 34 34 H 1.08998 * 109.46869 * 60.00380 * 10 9 8 35 35 H 1.08994 * 109.47040 * 300.00083 * 10 9 8 36 36 H 1.09004 * 109.46806 * 60.00264 * 11 10 9 37 37 H 1.09000 * 109.47828 * 300.00569 * 11 10 9 38 38 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 39 39 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 40 40 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.52410 * 176.84381 * 21 6 5 42 42 H 1.09001 * 109.52148 * 296.96963 * 21 6 5 43 43 H 1.08998 * 109.48245 * 62.38103 * 22 21 6 44 44 H 1.09002 * 109.47734 * 182.39674 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9816 0.8421 5 6 3.5658 1.4446 0.1265 6 6 4.0734 2.8885 0.0630 7 1 3.6814 3.4504 0.9108 8 6 5.6028 2.8957 0.1075 9 7 6.0845 4.2824 0.1631 10 6 7.5521 4.3285 0.2075 11 6 8.0151 5.7857 0.2640 12 6 9.5436 5.8337 0.3096 13 6 9.9996 7.2690 0.3659 14 1 9.2719 8.0671 0.3692 15 6 11.3456 7.5631 0.4194 16 7 11.7434 8.8155 0.4740 17 14 12.6042 6.1827 0.4144 18 1 12.9831 5.8635 -0.9855 19 1 13.8101 6.6097 1.1685 20 1 12.0199 4.9778 1.0561 21 6 3.5957 3.5311 -1.2428 22 6 2.0687 3.4484 -1.3142 23 8 1.6620 2.0816 -1.2209 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9988 0.8699 -0.6922 30 1 3.8544 0.9986 1.0783 31 1 5.9946 2.4106 -0.7864 32 1 5.9431 2.3572 0.9920 33 1 5.7288 4.8200 -0.6131 34 1 7.9578 3.8532 -0.6856 35 1 7.9056 3.8000 1.0928 36 1 7.6094 6.2614 1.1569 37 1 7.6616 6.3139 -0.6215 38 1 9.9489 5.3581 -0.5835 39 1 9.8975 5.3055 1.1949 40 1 12.6903 9.0224 0.5113 41 1 3.9056 4.5757 -1.2694 42 1 4.0302 3.0005 -2.0901 43 1 1.6350 4.0138 -0.4894 44 1 1.7260 3.8660 -2.2609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309718210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:11 Heat of formation + Delta-G solvation = -105.470789 kcal Electronic energy + Delta-G solvation = -18854.794953 eV Core-core repulsion = 15997.576951 eV Total energy + Delta-G solvation = -2857.218001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65547 -38.04951 -36.01285 -34.86731 -34.58825 -32.80884 -30.76706 -29.14447 -26.95174 -24.74776 -24.16606 -23.36050 -21.99903 -21.68880 -20.82885 -18.91074 -17.39794 -17.13632 -16.88632 -16.44949 -15.89338 -15.59030 -15.55033 -15.03303 -14.76601 -14.56161 -14.47405 -14.19427 -13.99654 -13.56019 -13.32017 -12.86444 -12.71186 -12.65621 -12.52359 -12.44415 -12.03847 -11.96766 -11.81380 -11.71798 -11.58988 -11.49306 -11.34052 -11.27893 -11.04294 -10.77016 -10.34846 -9.37032 -8.29977 -6.34366 1.35233 1.37599 1.49878 2.35951 2.87626 3.05031 3.15896 3.72992 3.78778 3.91140 4.00039 4.17317 4.22672 4.25323 4.30414 4.41600 4.48988 4.51767 4.56204 4.65876 4.69022 4.77528 4.84054 4.87222 4.91535 4.94903 4.97412 5.03126 5.09232 5.12816 5.16243 5.19754 5.25539 5.42874 5.46170 5.51239 5.59798 5.65775 6.08624 6.28985 6.34779 6.46258 6.73901 7.30129 8.86979 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.055681 B = 0.002840 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.743458 B = 9857.217706 C =10177.136285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.088 3.912 4 H 0.058 0.942 5 C -0.139 4.139 6 C -0.082 4.082 7 H 0.075 0.925 8 C 0.067 3.933 9 N -0.696 5.696 10 C 0.069 3.931 11 C -0.091 4.091 12 C -0.011 4.011 13 C -0.534 4.534 14 H 0.029 0.971 15 C 0.000 4.000 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.245 1.245 21 C -0.151 4.151 22 C 0.062 3.938 23 O -0.395 6.395 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.343 -20.125 -1.820 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.177 4.177 6 C -0.101 4.101 7 H 0.093 0.907 8 C -0.062 4.062 9 N -0.328 5.328 10 C -0.060 4.060 11 C -0.129 4.129 12 C -0.049 4.049 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.197 4.197 16 N -0.593 5.593 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.169 1.169 21 C -0.189 4.189 22 C -0.015 4.015 23 O -0.315 6.315 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.375 -20.073 -1.270 29.350 hybrid contribution 1.279 0.259 -0.751 1.506 sum -20.096 -19.814 -2.021 28.294 Atomic orbital electron populations 1.21703 0.95146 1.01977 1.01759 1.21578 0.96807 0.93726 1.03191 1.22238 0.93458 0.94546 0.86713 0.92371 1.22207 0.96020 0.96172 1.03345 1.21157 0.94176 0.96568 0.98223 0.90689 1.21989 0.94755 0.89023 1.00433 1.60492 1.08736 1.12919 1.50636 1.21884 0.87398 0.96456 1.00266 1.21267 0.95440 0.95444 1.00743 1.19495 0.94301 0.94573 0.96481 1.21522 0.92456 0.92985 1.50250 0.95233 1.26098 1.01156 0.98313 0.94111 1.70079 1.16425 1.20240 1.52582 0.85586 0.77699 0.79794 0.79114 1.19095 1.20925 1.16891 1.22240 0.97068 1.01836 0.97749 1.22604 0.93489 0.82631 1.02730 1.87892 1.78826 1.25378 1.39413 0.91815 0.92640 0.93265 0.91640 0.89167 0.91436 0.89688 0.95312 0.90966 0.83915 0.95191 0.91256 0.93269 0.93508 0.96325 0.96156 0.92491 0.90452 0.91773 0.92788 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 71.98 0.71 -1.16 16 2 C -0.12 -1.50 5.64 30.60 0.17 -1.32 16 3 C 0.09 1.38 2.64 30.63 0.08 1.46 16 4 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 5 C -0.14 -2.15 4.71 30.69 0.14 -2.00 16 6 C -0.08 -1.48 2.48 -10.67 -0.03 -1.51 16 7 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 8 C 0.07 1.42 5.15 86.31 0.44 1.87 16 9 N -0.70 -18.32 6.50 -513.90 -3.34 -21.66 16 10 C 0.07 2.15 5.69 86.30 0.49 2.64 16 11 C -0.09 -3.61 5.41 30.59 0.17 -3.44 16 12 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 13 C -0.53 -31.62 9.66 25.60 0.25 -31.38 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 15 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 16 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 17 Si 0.96 44.79 27.47 68.60 1.88 46.67 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 21 C -0.15 -2.62 5.12 30.68 0.16 -2.47 16 22 C 0.06 1.02 6.84 72.01 0.49 1.51 16 23 O -0.40 -7.58 9.94 -148.98 -1.48 -9.06 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.34 8.52 7.07 -89.70 -0.63 7.88 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.02 0.85 7.58 -2.38 -0.02 0.83 16 39 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.08 1.35 6.84 -2.39 -0.02 1.33 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -66.57 342.51 1.26 -65.31 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.24 Total: 15.02 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.66 Total: -35.74 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -3.04 Total: -82.20 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.48 Total: -9.06 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -66.57 1.26 -65.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309718210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.162 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds