Wall clock time and date at job start Mon Mar 30 2020 07:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46406 * 2 1 4 4 H 1.09000 * 109.47361 * 304.24052 * 3 2 1 5 5 C 1.50702 * 109.46704 * 184.24511 * 3 2 1 6 6 H 1.07997 * 120.00187 * 245.39880 * 5 3 2 7 7 C 1.37884 * 120.00165 * 65.40629 * 5 3 2 8 8 N 1.31515 * 120.00004 * 193.87876 * 7 5 3 9 9 Si 1.86798 * 119.99880 * 13.87633 * 7 5 3 10 10 H 1.48501 * 109.47334 * 84.19066 * 9 7 5 11 11 H 1.48497 * 109.47231 * 204.19414 * 9 7 5 12 12 H 1.48505 * 109.47021 * 324.19271 * 9 7 5 13 13 N 1.46894 * 109.47411 * 64.24769 * 3 2 1 14 14 C 1.46899 * 110.99788 * 262.11652 * 13 3 2 15 15 C 1.53008 * 109.47211 * 175.14689 * 14 13 3 16 16 H 1.08998 * 109.54212 * 55.17596 * 15 14 13 17 17 C 1.53177 * 109.54157 * 295.00022 * 15 14 13 18 18 C 1.53088 * 109.16309 * 183.15015 * 17 15 14 19 19 O 1.42902 * 109.41753 * 57.60926 * 18 17 15 20 20 C 1.42906 * 114.09566 * 298.84514 * 19 18 17 21 21 H 1.08996 * 109.48194 * 301.17299 * 20 19 18 22 22 C 1.52999 * 109.48220 * 181.14776 * 20 19 18 23 23 C 1.53008 * 109.47035 * 64.99651 * 22 20 19 24 24 C 1.53097 * 109.41677 * 61.15392 * 20 19 18 25 25 H 1.09008 * 109.46883 * 177.39516 * 1 2 3 26 26 H 1.08995 * 109.47442 * 297.38615 * 1 2 3 27 27 H 1.08993 * 109.47331 * 57.39494 * 1 2 3 28 28 H 1.08994 * 109.47121 * 240.00069 * 2 1 3 29 29 H 1.08993 * 109.46964 * 119.99384 * 2 1 3 30 30 H 0.97003 * 119.99553 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00319 * 138.16419 * 13 3 2 32 32 H 1.09000 * 109.47122 * 295.14481 * 14 13 3 33 33 H 1.09000 * 109.47064 * 55.14696 * 14 13 3 34 34 H 1.09000 * 109.52379 * 303.06102 * 17 15 14 35 35 H 1.09007 * 109.52345 * 63.18061 * 17 15 14 36 36 H 1.08996 * 109.48320 * 177.59145 * 18 17 15 37 37 H 1.09005 * 109.48270 * 297.61674 * 18 17 15 38 38 H 1.08994 * 109.47276 * 184.99593 * 22 20 19 39 39 H 1.08998 * 109.47154 * 305.00258 * 22 20 19 40 40 H 1.08994 * 109.47006 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.47109 * 300.00238 * 23 22 20 42 42 H 1.08998 * 109.46654 * 60.00300 * 23 22 20 43 43 H 1.08996 * 109.52011 * 182.48999 * 24 20 19 44 44 H 1.08999 * 109.52084 * 62.29460 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6158 1.9778 -0.8495 5 6 3.5432 1.4439 -0.1052 6 1 4.1416 1.8127 0.7148 7 6 4.1548 0.9745 -1.2483 8 7 5.4447 0.7180 -1.2461 9 14 3.1512 0.7029 -2.8002 10 1 3.0296 1.9838 -3.5417 11 1 3.8279 -0.3031 -3.6576 12 1 1.7980 0.2121 -2.4350 13 7 1.6357 2.1048 1.2474 14 6 0.4220 2.9079 1.0476 15 6 -0.0359 3.4827 2.3897 16 1 0.7816 4.0419 2.8448 17 6 -0.4554 2.3403 3.3199 18 6 -0.9856 2.9281 4.6302 19 8 -2.0777 3.8060 4.3496 20 6 -1.7335 4.9194 3.5224 21 1 -0.9483 5.5016 4.0047 22 6 -2.9668 5.8005 3.3136 23 6 -3.3928 6.4071 4.6522 24 6 -1.2334 4.4115 2.1675 25 1 -0.3633 -1.0267 -0.0467 26 1 -0.3634 0.4727 0.9124 27 1 -0.3633 0.5537 -0.8656 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8748 0.3875 -2.0502 31 1 2.3861 2.6693 1.6167 32 1 0.6357 3.7237 0.3570 33 1 -0.3661 2.2787 0.6340 34 1 -1.2378 1.7504 2.8424 35 1 0.4053 1.7042 3.5268 36 1 -1.3255 2.1213 5.2794 37 1 -0.1906 3.4841 5.1272 38 1 -2.7278 6.5998 2.6122 39 1 -3.7810 5.1968 2.9129 40 1 -4.2716 7.0344 4.5035 41 1 -3.6318 5.6077 5.3537 42 1 -2.5785 7.0108 5.0529 43 1 -0.9288 5.2575 1.5513 44 1 -2.0315 3.8635 1.6668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309997639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:34 Heat of formation + Delta-G solvation = -92.219084 kcal Electronic energy + Delta-G solvation = -19989.300728 eV Core-core repulsion = 17132.657364 eV Total energy + Delta-G solvation = -2856.643364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59427 -38.39254 -35.66849 -34.82336 -34.10747 -32.32452 -30.68050 -29.53614 -26.92558 -24.70260 -24.26162 -23.56754 -21.75389 -21.55435 -20.79694 -18.92883 -17.37935 -17.23856 -16.71656 -16.14255 -15.77010 -15.48700 -15.37117 -14.88172 -14.53429 -14.48503 -14.32880 -13.96946 -13.85953 -13.55997 -13.16174 -12.88541 -12.72632 -12.62284 -12.53491 -12.46685 -12.21529 -11.99053 -11.82032 -11.71899 -11.54585 -11.37670 -11.13930 -11.01943 -11.00021 -10.63164 -10.24863 -9.04722 -8.33860 -6.34242 1.32319 1.35459 1.45051 2.32783 2.92414 3.00927 3.42328 3.80912 3.94492 4.00055 4.08567 4.26066 4.32383 4.43767 4.47548 4.49712 4.52111 4.57879 4.64936 4.69189 4.74918 4.81269 4.90271 4.91649 4.97288 5.00343 5.07486 5.14185 5.20875 5.23189 5.25394 5.29842 5.40314 5.42280 5.48335 5.50836 5.58575 5.81671 6.01725 6.39129 6.50762 6.68445 6.87749 7.32218 8.82525 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.004396 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.451185 B = 6367.703402 C = 6420.402804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.198 3.802 4 H -0.003 1.003 5 C -0.535 4.535 6 H 0.037 0.963 7 C 0.021 3.979 8 N -0.941 5.941 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.675 5.675 14 C 0.061 3.939 15 C -0.079 4.079 16 H 0.064 0.936 17 C -0.134 4.134 18 C 0.062 3.938 19 O -0.393 6.393 20 C 0.090 3.910 21 H 0.057 0.943 22 C -0.115 4.115 23 C -0.147 4.147 24 C -0.140 4.140 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.332 0.668 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 8.149 8.457 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C 0.088 3.912 4 H 0.014 0.986 5 C -0.573 4.573 6 H 0.056 0.944 7 C -0.178 4.178 8 N -0.580 5.580 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.147 1.147 13 N -0.305 5.305 14 C -0.068 4.068 15 C -0.098 4.098 16 H 0.082 0.918 17 C -0.171 4.171 18 C -0.014 4.014 19 O -0.313 6.313 20 C 0.033 3.967 21 H 0.075 0.925 22 C -0.152 4.152 23 C -0.204 4.204 24 C -0.178 4.178 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.511 7.503 8.664 21.772 hybrid contribution 1.258 0.453 -1.508 2.015 sum -17.253 7.956 7.156 20.303 Atomic orbital electron populations 1.21824 0.95534 1.01097 1.01378 1.21806 0.95470 0.97879 0.99810 1.19269 0.92215 0.92071 0.87639 0.98554 1.21536 0.91713 1.42300 1.01766 0.94433 1.25759 0.95711 0.94110 1.02208 1.70105 1.12433 1.45790 1.29698 0.86262 0.81524 0.78218 0.79148 1.20216 1.21423 1.14679 1.60501 1.06914 1.34095 1.28943 1.22191 0.93516 0.95030 0.96097 1.21115 0.97226 0.96230 0.95230 0.91755 1.22031 1.01260 0.97847 0.95995 1.22644 0.89404 0.93228 0.96154 1.87873 1.35788 1.37874 1.69742 1.22208 0.97495 0.87226 0.89815 0.92536 1.21572 0.96444 0.98286 0.98935 1.21696 1.01434 1.00485 0.96829 1.22214 0.97654 0.99726 0.98183 0.92664 0.91466 0.93926 0.94174 0.93545 0.92557 0.85104 0.96771 0.90822 0.92084 0.90778 0.87993 0.93087 0.89355 0.91515 0.91697 0.93148 0.92699 0.90329 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.65 71.98 0.62 -4.14 16 2 C -0.11 -4.73 4.97 30.60 0.15 -4.58 16 3 C 0.20 9.03 1.80 44.17 0.08 9.10 16 4 H 0.00 -0.15 6.42 -2.39 -0.02 -0.16 16 5 C -0.54 -30.04 9.00 25.60 0.23 -29.81 16 6 H 0.04 2.33 7.73 -2.91 -0.02 2.31 16 7 C 0.02 1.19 5.36 84.66 0.45 1.65 16 8 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 9 Si 0.92 43.32 25.87 68.60 1.77 45.10 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.22 -9.53 5.35 99.48 0.53 -9.00 16 13 N -0.67 -26.12 5.60 -495.45 -2.78 -28.90 16 14 C 0.06 1.92 4.39 86.31 0.38 2.30 16 15 C -0.08 -2.03 2.46 -10.67 -0.03 -2.06 16 16 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.13 -3.33 5.27 30.68 0.16 -3.17 16 18 C 0.06 1.35 6.84 72.01 0.49 1.84 16 19 O -0.39 -9.18 9.94 -148.98 -1.48 -10.66 16 20 C 0.09 1.82 2.64 30.63 0.08 1.90 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 C -0.12 -1.90 5.64 30.60 0.17 -1.72 16 23 C -0.15 -2.25 9.81 71.98 0.71 -1.54 16 24 C -0.14 -3.01 4.71 30.68 0.14 -2.86 16 25 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.07 2.15 6.29 -2.39 -0.02 2.13 16 27 H 0.04 1.38 8.11 -2.39 -0.02 1.36 16 28 H 0.04 1.79 4.72 -2.39 -0.01 1.78 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.33 13.48 8.03 -89.69 -0.72 12.76 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 2.29 5.55 -2.39 -0.01 2.28 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.06 7.85 -2.38 -0.02 2.04 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.89 7.82 -2.38 -0.02 0.87 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -62.49 331.32 1.52 -60.98 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.05 Total: 24.67 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.65 Total: -33.10 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.48 Total: -86.98 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.48 Total: -10.66 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.77 Total: 45.10 kcal Total: -62.49 1.52 -60.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.243 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds