Wall clock time and date at job start Mon Mar 30 2020 07:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 H 1.08999 * 109.46992 * 305.34370 * 3 2 1 5 5 C 1.50701 * 109.47318 * 185.34428 * 3 2 1 6 6 H 1.07996 * 120.00356 * 239.99884 * 5 3 2 7 7 C 1.37888 * 119.99555 * 60.27324 * 5 3 2 8 8 N 1.31511 * 120.00167 * 359.72631 * 7 5 3 9 9 Si 1.86799 * 119.99480 * 179.72609 * 7 5 3 10 10 H 1.48503 * 109.47544 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46905 * 120.00121 * 9 7 5 12 12 H 1.48501 * 109.47107 * 240.00052 * 9 7 5 13 13 N 1.46898 * 109.47408 * 65.34474 * 3 2 1 14 14 C 1.46892 * 111.00201 * 208.17067 * 13 3 2 15 15 C 1.53004 * 109.47300 * 176.26756 * 14 13 3 16 16 H 1.08999 * 109.54169 * 54.17397 * 15 14 13 17 17 C 1.53176 * 109.54284 * 293.90712 * 15 14 13 18 18 C 1.53096 * 109.16342 * 297.11312 * 17 15 14 19 19 O 1.42908 * 109.41183 * 302.39061 * 18 17 15 20 20 C 1.42905 * 114.09840 * 61.16017 * 19 18 17 21 21 H 1.08999 * 109.47865 * 58.82169 * 20 19 18 22 22 C 1.52995 * 109.48092 * 178.85533 * 20 19 18 23 23 C 1.53002 * 109.47320 * 294.94451 * 22 20 19 24 24 C 1.53089 * 109.41272 * 298.84019 * 20 19 18 25 25 H 1.09004 * 109.46534 * 304.01456 * 1 2 3 26 26 H 1.08994 * 109.47047 * 64.00958 * 1 2 3 27 27 H 1.08998 * 109.46992 * 184.01621 * 1 2 3 28 28 H 1.09006 * 109.46937 * 239.99972 * 2 1 3 29 29 H 1.08999 * 109.47398 * 120.00149 * 2 1 3 30 30 H 0.96994 * 119.99645 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99311 * 332.12324 * 13 3 2 32 32 H 1.09006 * 109.47076 * 296.26943 * 14 13 3 33 33 H 1.09003 * 109.47741 * 56.26425 * 14 13 3 34 34 H 1.08994 * 109.52088 * 57.01683 * 17 15 14 35 35 H 1.08998 * 109.51971 * 177.20934 * 17 15 14 36 36 H 1.08994 * 109.47946 * 182.40784 * 18 17 15 37 37 H 1.08999 * 109.47752 * 62.37141 * 18 17 15 38 38 H 1.09000 * 109.47118 * 54.94348 * 22 20 19 39 39 H 1.08998 * 109.47196 * 174.94396 * 22 20 19 40 40 H 1.09000 * 109.46581 * 299.99603 * 23 22 20 41 41 H 1.08998 * 109.47030 * 59.99844 * 23 22 20 42 42 H 1.09002 * 109.46999 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.52207 * 297.70024 * 24 20 19 44 44 H 1.09004 * 109.52059 * 177.51343 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6007 1.9831 -0.8383 5 6 3.5412 1.4445 -0.1323 6 1 4.1509 1.8875 0.6412 7 6 4.1360 0.8858 -1.2438 8 7 3.3936 0.3463 -2.1857 9 14 5.9965 0.8952 -1.4114 10 1 6.5971 1.5574 -0.2256 11 1 6.4922 -0.5016 -1.5031 12 1 6.3791 1.6379 -2.6391 13 7 1.6586 2.0968 1.2587 14 6 1.5056 3.5459 1.0734 15 6 1.0190 4.1784 2.3788 16 1 1.6915 3.9018 3.1909 17 6 -0.3963 3.6831 2.6918 18 6 -1.3466 4.1438 1.5834 19 8 -1.2989 5.5682 1.4786 20 6 -0.0103 6.0856 1.1408 21 1 0.3112 5.6663 0.1874 22 6 -0.0858 7.6096 1.0287 23 6 -0.9933 7.9906 -0.1427 24 6 0.9936 5.7029 2.2313 25 1 -0.3632 0.5749 0.8519 26 1 -0.3633 0.4503 -0.9237 27 1 -0.3633 -1.0251 0.0720 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8121 -0.0463 -2.9677 31 1 0.8164 1.6896 1.6370 32 1 2.4660 3.9800 0.7952 33 1 0.7784 3.7366 0.2841 34 1 -0.3979 2.5944 2.7438 35 1 -0.7234 4.0949 3.6466 36 1 -2.3628 3.8307 1.8226 37 1 -1.0424 3.6992 0.6359 38 1 -0.4921 8.0221 1.9522 39 1 0.9133 8.0114 0.8599 40 1 -0.5869 7.5781 -1.0662 41 1 -1.9923 7.5888 0.0261 42 1 -1.0473 9.0764 -0.2222 43 1 0.6945 6.1554 3.1768 44 1 1.9859 6.0586 1.9540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309997643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:37 Heat of formation + Delta-G solvation = -74.589387 kcal Electronic energy + Delta-G solvation = -20339.166951 eV Core-core repulsion = 17483.288067 eV Total energy + Delta-G solvation = -2855.878883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78218 -36.47962 -34.27546 -33.86601 -31.93808 -30.50717 -29.76366 -26.89866 -25.41128 -23.69135 -23.52975 -22.37527 -21.28409 -19.53669 -18.52976 -16.35955 -16.31219 -15.98542 -15.12544 -14.85167 -14.55359 -14.12296 -13.77535 -13.61382 -13.33686 -13.07106 -12.94680 -12.58851 -12.17902 -11.83479 -11.69596 -11.53134 -11.26029 -11.13370 -11.07575 -10.97669 -10.88279 -10.73401 -10.57653 -10.21965 -10.08043 -9.93788 -9.65090 -9.47802 -9.20515 -8.96926 -8.33360 -7.18274 -5.95807 -3.99522 3.31447 3.39446 3.44756 3.88808 4.45606 4.73785 4.90118 5.04598 5.07118 5.18207 5.26111 5.30959 5.37740 5.43622 5.54028 5.61356 5.72036 5.81123 5.87929 5.93098 5.98156 6.06097 6.09579 6.14158 6.14884 6.18087 6.29047 6.33028 6.38310 6.41429 6.60257 6.69420 6.82563 7.06925 7.18920 7.38145 7.49818 7.78724 7.93709 8.33059 8.41827 8.77796 9.09021 9.65482 11.09722 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.005614 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.780491 B = 4986.019873 C = 5556.677702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.686 5.686 14 C 0.071 3.929 15 C -0.092 4.092 16 H 0.081 0.919 17 C -0.150 4.150 18 C 0.059 3.941 19 O -0.381 6.381 20 C 0.087 3.913 21 H 0.062 0.938 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.315 0.685 32 H 0.070 0.930 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 9.789 6.579 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.318 5.318 14 C -0.059 4.059 15 C -0.110 4.110 16 H 0.099 0.901 17 C -0.187 4.187 18 C -0.017 4.017 19 O -0.300 6.300 20 C 0.029 3.971 21 H 0.080 0.920 22 C -0.152 4.152 23 C -0.207 4.207 24 C -0.180 4.180 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.000 9.861 6.652 14.335 hybrid contribution 0.429 -0.302 -0.720 0.891 sum -7.572 9.559 5.932 13.560 Atomic orbital electron populations 1.21888 0.99674 0.99486 0.99688 1.21790 0.91169 1.00508 1.03071 1.19150 0.95474 0.89903 0.84420 0.98124 1.21260 0.91286 1.36217 1.04119 0.92051 1.24969 0.98084 0.95721 0.95870 1.69880 1.34599 1.39750 1.09535 0.86506 0.85877 0.77591 0.77819 1.19802 1.21138 1.21273 1.60768 1.37537 1.01516 1.32009 1.21961 0.99615 0.90616 0.93714 1.21270 0.96107 0.93849 0.99805 0.90106 1.22184 0.95825 1.01577 0.99163 1.22585 0.99686 0.81286 0.98187 1.87848 1.30382 1.20728 1.91088 1.22180 0.83685 0.93989 0.97218 0.91995 1.21541 1.00488 0.93664 0.99552 1.21721 1.00503 1.00514 0.97984 1.22191 0.99798 0.96445 0.99520 0.94739 0.93885 0.94367 0.88246 0.94092 0.93179 0.86649 0.91123 0.96517 0.90701 0.91565 0.89432 0.92888 0.91450 0.90752 0.92836 0.92062 0.93064 0.91493 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.81 37.16 0.36 -2.52 16 2 C -0.13 -2.98 5.34 -26.73 -0.14 -3.12 16 3 C 0.22 5.40 2.03 -68.87 -0.14 5.26 16 4 H 0.00 0.03 7.69 -51.93 -0.40 -0.37 16 5 C -0.49 -13.54 8.77 -34.44 -0.30 -13.84 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.60 11.30 55.43 0.63 -24.97 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.69 -14.34 6.33 -107.95 -0.68 -15.02 16 14 C 0.07 1.31 4.41 -3.83 -0.02 1.29 16 15 C -0.09 -1.36 2.90 -90.43 -0.26 -1.62 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.15 -2.00 5.49 -26.59 -0.15 -2.15 16 18 C 0.06 0.80 6.57 37.21 0.24 1.04 16 19 O -0.38 -5.44 9.94 -35.23 -0.35 -5.79 16 20 C 0.09 1.16 2.37 -26.69 -0.06 1.09 16 21 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 22 C -0.12 -1.28 5.64 -26.73 -0.15 -1.43 16 23 C -0.15 -1.60 9.81 37.16 0.36 -1.24 16 24 C -0.14 -1.85 4.92 -26.59 -0.13 -1.98 16 25 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.31 5.99 4.58 -39.29 -0.18 5.81 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.02 0.32 4.85 -51.93 -0.25 0.07 16 34 H 0.07 1.01 6.52 -51.93 -0.34 0.67 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.79 6.47 -51.93 -0.34 0.46 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -28.42 330.75 -8.86 -37.28 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.94 Total: 4.79 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.47 Total: -17.81 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.06 Total: -39.99 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.35 Total: -5.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.42 -8.86 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.305 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds