Wall clock time and date at job start Mon Mar 30 2020 07:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 H 1.08999 * 109.46992 * 305.34370 * 3 2 1 5 5 C 1.50701 * 109.47318 * 185.34428 * 3 2 1 6 6 H 1.07996 * 120.00356 * 239.99884 * 5 3 2 7 7 C 1.37888 * 119.99555 * 60.27324 * 5 3 2 8 8 N 1.31511 * 120.00167 * 359.72631 * 7 5 3 9 9 Si 1.86799 * 119.99480 * 179.72609 * 7 5 3 10 10 H 1.48503 * 109.47544 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46905 * 120.00121 * 9 7 5 12 12 H 1.48501 * 109.47107 * 240.00052 * 9 7 5 13 13 N 1.46898 * 109.47408 * 65.34474 * 3 2 1 14 14 C 1.46892 * 111.00201 * 208.17067 * 13 3 2 15 15 C 1.53004 * 109.47300 * 176.26756 * 14 13 3 16 16 H 1.08999 * 109.54169 * 54.17397 * 15 14 13 17 17 C 1.53176 * 109.54284 * 293.90712 * 15 14 13 18 18 C 1.53096 * 109.16342 * 297.11312 * 17 15 14 19 19 O 1.42908 * 109.41183 * 302.39061 * 18 17 15 20 20 C 1.42905 * 114.09840 * 61.16017 * 19 18 17 21 21 H 1.08999 * 109.47865 * 58.82169 * 20 19 18 22 22 C 1.52995 * 109.48092 * 178.85533 * 20 19 18 23 23 C 1.53002 * 109.47320 * 294.94451 * 22 20 19 24 24 C 1.53089 * 109.41272 * 298.84019 * 20 19 18 25 25 H 1.09004 * 109.46534 * 304.01456 * 1 2 3 26 26 H 1.08994 * 109.47047 * 64.00958 * 1 2 3 27 27 H 1.08998 * 109.46992 * 184.01621 * 1 2 3 28 28 H 1.09006 * 109.46937 * 239.99972 * 2 1 3 29 29 H 1.08999 * 109.47398 * 120.00149 * 2 1 3 30 30 H 0.96994 * 119.99645 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99311 * 332.12324 * 13 3 2 32 32 H 1.09006 * 109.47076 * 296.26943 * 14 13 3 33 33 H 1.09003 * 109.47741 * 56.26425 * 14 13 3 34 34 H 1.08994 * 109.52088 * 57.01683 * 17 15 14 35 35 H 1.08998 * 109.51971 * 177.20934 * 17 15 14 36 36 H 1.08994 * 109.47946 * 182.40784 * 18 17 15 37 37 H 1.08999 * 109.47752 * 62.37141 * 18 17 15 38 38 H 1.09000 * 109.47118 * 54.94348 * 22 20 19 39 39 H 1.08998 * 109.47196 * 174.94396 * 22 20 19 40 40 H 1.09000 * 109.46581 * 299.99603 * 23 22 20 41 41 H 1.08998 * 109.47030 * 59.99844 * 23 22 20 42 42 H 1.09002 * 109.46999 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.52207 * 297.70024 * 24 20 19 44 44 H 1.09004 * 109.52059 * 177.51343 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6007 1.9831 -0.8383 5 6 3.5412 1.4445 -0.1323 6 1 4.1509 1.8875 0.6412 7 6 4.1360 0.8858 -1.2438 8 7 3.3936 0.3463 -2.1857 9 14 5.9965 0.8952 -1.4114 10 1 6.5971 1.5574 -0.2256 11 1 6.4922 -0.5016 -1.5031 12 1 6.3791 1.6379 -2.6391 13 7 1.6586 2.0968 1.2587 14 6 1.5056 3.5459 1.0734 15 6 1.0190 4.1784 2.3788 16 1 1.6915 3.9018 3.1909 17 6 -0.3963 3.6831 2.6918 18 6 -1.3466 4.1438 1.5834 19 8 -1.2989 5.5682 1.4786 20 6 -0.0103 6.0856 1.1408 21 1 0.3112 5.6663 0.1874 22 6 -0.0858 7.6096 1.0287 23 6 -0.9933 7.9906 -0.1427 24 6 0.9936 5.7029 2.2313 25 1 -0.3632 0.5749 0.8519 26 1 -0.3633 0.4503 -0.9237 27 1 -0.3633 -1.0251 0.0720 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8121 -0.0463 -2.9677 31 1 0.8164 1.6896 1.6370 32 1 2.4660 3.9800 0.7952 33 1 0.7784 3.7366 0.2841 34 1 -0.3979 2.5944 2.7438 35 1 -0.7234 4.0949 3.6466 36 1 -2.3628 3.8307 1.8226 37 1 -1.0424 3.6992 0.6359 38 1 -0.4921 8.0221 1.9522 39 1 0.9133 8.0114 0.8599 40 1 -0.5869 7.5781 -1.0662 41 1 -1.9923 7.5888 0.0261 42 1 -1.0473 9.0764 -0.2222 43 1 0.6945 6.1554 3.1768 44 1 1.9859 6.0586 1.9540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309997643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:37 Heat of formation + Delta-G solvation = -91.448013 kcal Electronic energy + Delta-G solvation = -20339.897996 eV Core-core repulsion = 17483.288067 eV Total energy + Delta-G solvation = -2856.609928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93440 -38.16663 -35.72504 -34.85796 -33.91442 -32.11178 -30.77306 -28.75232 -26.81423 -25.18651 -24.65475 -24.04186 -22.26393 -21.44143 -19.78178 -18.40625 -17.36955 -17.14022 -16.80738 -16.55505 -15.86074 -15.72997 -14.99564 -14.82334 -14.62926 -14.46828 -14.27928 -13.96875 -13.77828 -13.26789 -13.15607 -12.85439 -12.72853 -12.65858 -12.52790 -12.37924 -12.24942 -12.07809 -11.96641 -11.82501 -11.55549 -11.41063 -11.35135 -11.05407 -10.95727 -10.44137 -10.23336 -8.98328 -8.08034 -6.20084 1.38709 1.40775 1.52706 2.42795 2.85730 3.16795 3.56862 3.70509 3.87854 4.00265 4.06431 4.19426 4.24095 4.32218 4.45985 4.48148 4.49340 4.53923 4.62750 4.67536 4.75700 4.80368 4.84756 4.91299 5.01201 5.06252 5.09508 5.12954 5.17941 5.18760 5.27378 5.31890 5.34589 5.38161 5.44405 5.58562 5.73997 5.88895 6.30775 6.35212 6.51486 6.93914 7.00899 7.49207 8.95406 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.005614 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.780491 B = 4986.019873 C = 5556.677702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.224 3.776 4 H -0.035 1.035 5 C -0.510 4.510 6 H 0.048 0.952 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.685 5.685 14 C 0.077 3.923 15 C -0.086 4.086 16 H 0.079 0.921 17 C -0.144 4.144 18 C 0.058 3.942 19 O -0.387 6.387 20 C 0.084 3.916 21 H 0.038 0.962 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.044 0.956 33 H 0.010 0.990 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 10.539 7.989 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.116 3.884 4 H -0.017 1.017 5 C -0.549 4.549 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.318 5.318 14 C -0.052 4.052 15 C -0.105 4.105 16 H 0.097 0.903 17 C -0.182 4.182 18 C -0.019 4.019 19 O -0.306 6.306 20 C 0.027 3.973 21 H 0.056 0.944 22 C -0.150 4.150 23 C -0.206 4.206 24 C -0.174 4.174 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.519 10.616 8.075 15.827 hybrid contribution 0.575 -0.521 -1.171 1.405 sum -7.944 10.095 6.905 14.584 Atomic orbital electron populations 1.21756 0.96254 1.01370 1.00264 1.21615 0.94257 0.98984 1.01264 1.18923 0.94045 0.90672 0.84778 1.01744 1.21509 0.92849 1.36434 1.04099 0.93339 1.25696 1.02348 0.95346 0.95557 1.70006 1.36216 1.40078 1.09846 0.85544 0.80759 0.77762 0.77778 1.19532 1.20462 1.20772 1.60646 1.38460 1.02786 1.29907 1.21895 0.98204 0.89217 0.95900 1.21201 0.97041 0.95003 0.97206 0.90296 1.22154 0.94493 1.01587 0.99930 1.22647 1.00953 0.81025 0.97234 1.87849 1.30811 1.20978 1.90983 1.22238 0.83485 0.95450 0.96155 0.94369 1.21562 1.01392 0.91861 1.00149 1.21708 0.99764 1.01676 0.97453 1.22166 0.99976 0.94975 1.00323 0.92574 0.94640 0.92031 0.91439 0.94370 0.93076 0.85213 0.93741 0.97220 0.90724 0.89615 0.87234 0.95014 0.90433 0.89555 0.93701 0.92987 0.91180 0.89610 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.81 71.98 0.71 -4.50 16 2 C -0.12 -5.83 5.34 30.59 0.16 -5.66 16 3 C 0.22 11.42 2.03 44.17 0.09 11.51 16 4 H -0.03 -2.00 7.69 -2.39 -0.02 -2.02 16 5 C -0.51 -28.91 8.77 25.60 0.22 -28.69 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.47 5.29 84.66 0.45 0.92 16 8 N -0.92 -53.66 11.30 21.45 0.24 -53.42 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.68 -28.88 6.33 -495.46 -3.14 -32.01 16 14 C 0.08 2.91 4.41 86.31 0.38 3.29 16 15 C -0.09 -2.45 2.90 -10.67 -0.03 -2.48 16 16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.14 -3.56 5.49 30.69 0.17 -3.39 16 18 C 0.06 1.48 6.57 72.01 0.47 1.96 16 19 O -0.39 -10.46 9.94 -148.98 -1.48 -11.95 16 20 C 0.08 2.17 2.37 30.62 0.07 2.24 16 21 H 0.04 1.16 6.74 -2.39 -0.02 1.14 16 22 C -0.11 -2.30 5.64 30.59 0.17 -2.13 16 23 C -0.15 -2.99 9.81 71.98 0.71 -2.29 16 24 C -0.14 -3.35 4.92 30.68 0.15 -3.20 16 25 H 0.06 1.84 6.36 -2.39 -0.02 1.82 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 3.66 5.96 -2.38 -0.01 3.65 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 31 H 0.33 12.22 4.58 -89.69 -0.41 11.81 16 32 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.01 0.39 4.85 -2.39 -0.01 0.37 16 34 H 0.07 1.85 6.52 -2.39 -0.02 1.83 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.03 0.94 6.47 -2.39 -0.02 0.93 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -61.87 330.75 1.91 -59.95 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.54 Total: 23.12 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.73 Total: -32.42 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.89 Total: -85.44 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.48 Total: -11.95 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.87 1.91 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.497 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds