Wall clock time and date at job start Mon Mar 30 2020 07:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.09003 * 109.46866 * 304.25799 * 3 2 1 5 5 C 1.50701 * 109.47017 * 184.26150 * 3 2 1 6 6 H 1.07996 * 119.99817 * 239.99783 * 5 3 2 7 7 C 1.37872 * 119.99975 * 59.72202 * 5 3 2 8 8 N 1.31515 * 120.00565 * 0.27443 * 7 5 3 9 9 Si 1.86807 * 119.99918 * 180.27493 * 7 5 3 10 10 H 1.48509 * 109.46882 * 59.99868 * 9 7 5 11 11 H 1.48496 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46831 * 300.00059 * 9 7 5 13 13 N 1.46896 * 109.47352 * 64.25688 * 3 2 1 14 14 C 1.46897 * 111.00149 * 206.20282 * 13 3 2 15 15 C 1.52999 * 109.47390 * 174.54006 * 14 13 3 16 16 H 1.09002 * 109.53992 * 305.18136 * 15 14 13 17 17 C 1.53182 * 109.54189 * 65.44124 * 15 14 13 18 18 C 1.53099 * 109.16023 * 176.84751 * 17 15 14 19 19 O 1.42897 * 109.41668 * 302.39690 * 18 17 15 20 20 C 1.42901 * 114.10204 * 61.15356 * 19 18 17 21 21 H 1.09004 * 109.47767 * 58.82913 * 20 19 18 22 22 C 1.53004 * 109.49317 * 178.85359 * 20 19 18 23 23 C 1.53000 * 109.46821 * 294.95389 * 22 20 19 24 24 C 1.53092 * 109.41741 * 298.84698 * 20 19 18 25 25 H 1.09002 * 109.47549 * 294.87098 * 1 2 3 26 26 H 1.09003 * 109.47007 * 54.87385 * 1 2 3 27 27 H 1.09004 * 109.47344 * 174.87031 * 1 2 3 28 28 H 1.08998 * 109.47604 * 239.99462 * 2 1 3 29 29 H 1.09004 * 109.46861 * 119.99510 * 2 1 3 30 30 H 0.96998 * 120.00452 * 180.02562 * 8 7 5 31 31 H 1.00897 * 110.99812 * 82.24773 * 13 3 2 32 32 H 1.09002 * 109.47320 * 294.53801 * 14 13 3 33 33 H 1.09007 * 109.47239 * 54.53898 * 14 13 3 34 34 H 1.08996 * 109.52484 * 296.75636 * 17 15 14 35 35 H 1.09003 * 109.51960 * 56.94673 * 17 15 14 36 36 H 1.08994 * 109.47631 * 182.40801 * 18 17 15 37 37 H 1.09003 * 109.48406 * 62.38052 * 18 17 15 38 38 H 1.08997 * 109.46868 * 54.95302 * 22 20 19 39 39 H 1.08993 * 109.47180 * 174.95026 * 22 20 19 40 40 H 1.08997 * 109.47435 * 60.00332 * 23 22 20 41 41 H 1.09002 * 109.46620 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.47329 * 299.99631 * 23 22 20 43 43 H 1.09003 * 109.51948 * 297.70192 * 24 20 19 44 44 H 1.09000 * 109.52205 * 177.51118 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6156 1.9779 -0.8494 5 6 3.5433 1.4439 -0.1056 6 1 4.1390 1.8918 0.6759 7 6 4.1582 0.8682 -1.1971 8 7 3.4327 0.3226 -2.1488 9 14 6.0219 0.8630 -1.3242 10 1 6.5951 0.1347 -0.1638 11 1 6.4304 0.1883 -2.5824 12 1 6.5217 2.2614 -1.3270 13 7 1.6361 2.1048 1.2475 14 6 1.5317 3.5582 1.0621 15 6 0.9798 4.1969 2.3382 16 1 0.0356 3.7220 2.6046 17 6 1.9863 4.0156 3.4786 18 6 1.4616 4.7253 4.7295 19 8 1.2428 6.1065 4.4355 20 6 0.2758 6.3385 3.4092 21 1 -0.6784 5.9012 3.7032 22 6 0.1040 7.8445 3.2008 23 6 -0.4906 8.4697 4.4643 24 6 0.7529 5.6937 2.1053 25 1 -0.3634 0.4322 0.9323 26 1 -0.3633 0.5913 -0.8405 27 1 -0.3634 -1.0236 -0.0919 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8654 -0.0827 -2.9165 31 1 2.2720 1.8807 1.9981 32 1 2.5183 3.9690 0.8477 33 1 0.8608 3.7712 0.2297 34 1 2.1120 2.9534 3.6881 35 1 2.9450 4.4469 3.1902 36 1 2.1937 4.6359 5.5320 37 1 0.5230 4.2668 5.0409 38 1 1.0745 8.2957 2.9942 39 1 -0.5651 8.0207 2.3587 40 1 0.1786 8.2936 5.3064 41 1 -0.6134 9.5425 4.3155 42 1 -1.4611 8.0185 4.6708 43 1 1.6866 6.1589 1.7893 44 1 -0.0036 5.8316 1.3327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309997646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:40 Heat of formation + Delta-G solvation = -83.020052 kcal Electronic energy + Delta-G solvation = -19843.502363 eV Core-core repulsion = 16987.257898 eV Total energy + Delta-G solvation = -2856.244464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54025 -36.47131 -34.29416 -33.94176 -31.88438 -30.59786 -29.78345 -27.10115 -25.39714 -23.59726 -22.98319 -22.18635 -20.75600 -19.69447 -19.33694 -16.70685 -16.37185 -15.83401 -15.00980 -14.80655 -14.53042 -14.02455 -13.71335 -13.56987 -13.32021 -13.04040 -12.96859 -12.51060 -12.00303 -11.73150 -11.64385 -11.55636 -11.23852 -11.15462 -11.06761 -10.97781 -10.86267 -10.67236 -10.56347 -10.19903 -10.17085 -9.98501 -9.61648 -9.57210 -9.15310 -9.03116 -8.37608 -7.23171 -5.99505 -4.12672 3.27613 3.32863 3.35265 3.83439 4.39014 4.63316 4.91572 5.02323 5.07857 5.16681 5.22158 5.26339 5.31209 5.39981 5.51398 5.64469 5.74384 5.77389 5.84262 5.93067 5.97376 6.07104 6.11264 6.17493 6.29748 6.35284 6.39213 6.44936 6.50706 6.58622 6.71996 6.79060 7.14667 7.17632 7.33294 7.45311 7.59952 7.77753 8.09848 8.16031 8.34734 8.67742 9.00369 9.54946 11.00468 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.004621 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.657797 B = 6058.276309 C = 6529.429131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.085 4.085 16 H 0.073 0.927 17 C -0.150 4.150 18 C 0.064 3.936 19 O -0.382 6.382 20 C 0.092 3.908 21 H 0.055 0.945 22 C -0.117 4.117 23 C -0.149 4.149 24 C -0.144 4.144 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 10.414 10.413 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.056 4.056 15 C -0.104 4.104 16 H 0.092 0.908 17 C -0.188 4.188 18 C -0.013 4.013 19 O -0.302 6.302 20 C 0.034 3.966 21 H 0.072 0.928 22 C -0.154 4.154 23 C -0.206 4.206 24 C -0.183 4.183 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.285 10.348 10.202 16.255 hybrid contribution 1.978 -0.106 -0.440 2.029 sum -5.307 10.242 9.762 15.112 Atomic orbital electron populations 1.21683 0.99038 0.98215 1.00317 1.21496 0.92040 0.99297 1.01618 1.19138 0.92635 0.91143 0.86389 0.95175 1.21831 0.92750 1.37915 1.05960 0.93004 1.24927 0.97928 0.94984 0.95643 1.69865 1.34954 1.37894 1.09643 0.86726 0.86119 0.78171 0.77379 1.20281 1.21209 1.20417 1.60910 1.54917 1.06249 1.09791 1.21750 0.98645 0.90126 0.95073 1.21231 0.99095 0.94080 0.95998 0.90848 1.22229 0.99610 1.01421 0.95507 1.22550 0.99902 0.81804 0.97017 1.87868 1.61396 1.24789 1.56114 1.22115 0.91218 0.95484 0.87751 0.92753 1.21551 1.01801 0.93611 0.98449 1.21716 1.00728 0.99863 0.98315 1.22245 1.02275 0.96285 0.97459 0.93523 0.94516 0.95717 0.89218 0.95170 0.92834 0.85779 0.95556 0.92272 0.90394 0.91428 0.89350 0.93520 0.91208 0.90760 0.92020 0.93025 0.93071 0.91206 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.21 5.30 1.99 -68.86 -0.14 5.17 16 4 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 5 C -0.55 -14.70 8.49 -34.44 -0.29 -14.99 16 6 H 0.05 1.39 7.72 -52.49 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.04 11.29 55.43 0.63 -24.42 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.69 -14.22 5.72 -107.95 -0.62 -14.83 16 14 C 0.07 1.37 4.97 -3.83 -0.02 1.35 16 15 C -0.09 -1.25 2.48 -90.44 -0.22 -1.48 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.15 -2.08 5.12 -26.59 -0.14 -2.22 16 18 C 0.06 0.78 6.84 37.21 0.25 1.04 16 19 O -0.38 -5.10 9.94 -35.23 -0.35 -5.45 16 20 C 0.09 1.10 2.64 -26.68 -0.07 1.03 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 C -0.12 -1.18 5.64 -26.73 -0.15 -1.34 16 23 C -0.15 -1.37 9.81 37.16 0.36 -1.01 16 24 C -0.14 -1.88 4.70 -26.59 -0.13 -2.00 16 25 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 2.40 5.96 -51.93 -0.31 2.09 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.33 6.65 6.95 -39.29 -0.27 6.37 16 32 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 34 H 0.08 1.10 6.98 -51.93 -0.36 0.73 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -27.65 340.31 -9.10 -36.75 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.45 Total: 4.49 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.41 Total: -17.82 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.25 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.35 Total: -5.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.65 -9.10 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.266 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds